BAC Information

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BAC

Clone NameB6Ng01-186K07
Chromosome4 (Build37)
Map Location 145,587,134 - 145,702,580
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K07.bB6Ng01-186K07.g
ACCGA011429GA011430
length1,1771,152
definitionB6Ng01-186K07.b B6Ng01-186K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,587,134 - 145,588,464)(145,701,418 - 145,702,580)
sequence
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttactcgtttctttgcttttaatttgtctttttctta
aacccatctaatcgtgcaggaatcccacactccccatcgagaaccactcc
tccaactctgttgcaggctgccttccacacaacttcccaggacctactct
gcacagcttcttcacaaagttgctgccagactagaccagagctggatgta
gtaggacactgcacctgggttctgaacccttcagatacaatggatgctgt
ctaacttctcatattgtgcgtgtagccctctgggctataaatgcacaaaa
ttaagcagtccctttgaactctgatgctcagaacagatacccaaaacaaa
caaaaacgtagataaaatgtccttggctcaaaccacaaaccatagaggta
tcttataaggagcacaatttatgtgatatccaagacaaagaatggaaaac
ccacagtcatgatcaaggacattaaagtttgtaaaccatgtgaatccact
cagacagaaacaaaatgaatcttgggcaagaaaataataccagatgcctg
aaggaaataaggacaatataaaatattaaaattatgttcaataggtgctt
agaaataccacaaaaaaaaaaaatcctgaagagaaaatgcagtgaggcaa
ataaaaatgatacatagagaacctgtgggagacagattatcagacttaaa
gaaaaagtagaggaggtggatgcctcaatcaaagaaaatggtgaattaaa
atgatgttaggtcaagggacaatattatttactgcttgaaggatgaggca
ataaagagaaactcctttggaaaactgtcctgatctttgccaaaaaaaag
taagggaagaagaaagaaagaaagaagaagaagaaagaagaagaagaaga
agaagaagaagagacgaagaagaagaagaagagagaggaagaagagagag
aggaagagagagaagaaggaactgacaaattcaatactctgcactgtttg
tcataaatgcttcctggatggtctgtacactcttatgtacacccatgcat
gttcagcattaagtggggggtaaaagg
gaattcttttctttttgtagactctagagaccagttttttttccatattg
tgtcccagtctaatcttgtaggacatttgtctgagggaaatgcaaaggca
gatacagattaacacgttctctttccttggaaatatcgacctaaaggaag
cacaaatgttttatgcaaacttccattaatatgcagcatttataaaatga
gtttcaataacaacaatgacaacaaacagactcctgaacagaagtggagt
gctcttcatgtacaaaatttaatatttgtgacccttgtgactcacacagt
actgttgcaaaatcatgttttgtacattagtaatgctcacaaccctaatt
tgagaggctgaagtatgctcatgtcattgtggacactttcagaacaattc
cccttatgtacattgatgcaaaatactcaataaaatactcaaatactgaa
tccaaaagacatcactaagaatctatccaaaatgacgaagattgttttct
catccaatatatcttgaagagtttccattccctctattcttctcagttcc
tgtccactttttctcccttctggatctaacccctttctgtatctcagtag
gaaaacaaacaagcaaataaacaaacaaacaaaatccatagactcactaa
ttgacaaatctgcccccaaaaagctaaggtaaaagttataatatatttca
aaacaactggtccaagcattagtatttgtacatcaccctatctagtctca
aatttctgatctatgtttgtgcaatttttgtgtgaaatattttgctgatt
gctgataaagtatattttcctatgggtcgttataagtgaagatatcaaaa
agctaaaatttcaaaggggaagaaattttttggctcaactctgagttcat
tactcagaatgaaagacgatgattgatgtttactggataggtgatataaa
tgtgggagtctctgcaacacaggttctggtagaataaacatctatgagac
aaaaaagaaatctagtcaatacctctctgtattatttcagcactgtttgg
tggggtgtgtgtgggtatagccattgaatctacagcactcagagaaatct
tgccagtgcctggtaacatctgagtaaaaagtctcctgtactcaagaagt
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145587134_145588464
seq2: B6Ng01-186K07.b_30_1206

seq1  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50

seq1  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTTTTGCTTGCTTGCTTG  100
      |||||||||||||||||||||||||||||||||||               
seq2  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTT---------------  85

seq1  CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT  150
                               |||||||||||||||||||||||||
seq2  -------------------------TTGCTTGCTTGCTTGCTTGCTTGCT  110

seq1  TGCTTATTCGTTTCTTTGCTTTTAATTTGTCTTTTTCTTAAACTCATCTA  200
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTTACTCGTTTCTTTGCTTTTAATTTGTCTTTTTCTTAAACCCATCTA  160

seq1  ATCGTGCAGGAATCCCACACTCCCCATCAGGAACCACTCCTCCAACTCTG  250
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATCGTGCAGGAATCCCACACTCCCCATCGAGAACCACTCCTCCAACTCTG  210

seq1  TTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACTCTGCAAAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACTCTGCACAGCTTC  260

seq1  TTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  310

seq1  GCACCTGGGTTCTGAACCCTTCAGATTCAATGGATCCTGTCTAACTTCTC  400
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  GCACCTGGGTTCTGAACCCTTCAGATACAATGGATGCTGTCTAACTTCTC  360

seq1  ATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTC  410

seq1  CCTTTGAATTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTA  500
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAACTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTA  460

seq1  GATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGG  510

seq1  AGCACAATTTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATTTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCAT  560

seq1  GATCAAGGACATTAAAGTTTGTAAACC-TGTGAATCCACTCAGACAGGAA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GATCAAGGACATTAAAGTTTGTAAACCATGTGAATCCACTCAGACAGAAA  610

seq1  CAAAATGAATCTTGGTCAAGAAAATAACACCAGATGCCTGAAGGAAATAA  699
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAAAATGAATCTTGGGCAAGAAAATAATACCAGATGCCTGAAGGAAATAA  660

seq1  GGACAATATAAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATGCCA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGACAATATAAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATACCA  710

seq1  C-ACAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGA  798
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGA  760

seq1  TACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAG  810

seq1  AGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAG  860

seq1  GTCAAGGGACAATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGACAATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAA  910

seq1  ACTCCTTTGGAAAACTGTCCTGATCTTTGTCAAAAAAAAAGTAAGGAAAG  998
      ||||||||||||||||||||||||||||| | |||||||||||||| || 
seq2  ACTCCTTTGGAAAACTGTCCTGATCTTTG-CCAAAAAAAAGTAAGGGAA-  958

seq1  GAAGAAAGAAAGAAAGAAAGAGAGAGAGACAGAAAGAAAGAAAGAAAGAA  1048
      ||||||||||||||||||  ||                            
seq2  GAAGAAAGAAAGAAAGAAGAAG----------------------------  980

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCGAG  1098
                 |||||||||   |||||   |||||   ||||     ||
seq2  -----------AAGAAAGAA--GAAGAA--GAAGAA--GAAGA-----AG  1008

seq1  AGAGAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  1148
      | ||||||                           |||||   |||||  
seq2  A-AGAGAC--------------------------GAAGAA--GAAGAAGA  1029

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGACAGTAAGAAAGACAGAC  1198
      | ||| || ||| |||| ||| || |||| |||    ||||| ||   ||
seq2  AGAGAGAGGAAG-AAGAGAGAGAGGAAGAGAGA---GAAGAAGGA---AC  1072

seq1  AGACAGAAAGAGAGAAAGAAAACTAGAACAAAATTACAATACATACTGCA  1248
       |||                          ||||| ||||||   |||||
seq2  TGAC--------------------------AAATT-CAATAC--TCTGCA  1093

seq1  CTGTTTGTTGATAAATGGTTTCCTGATTGTTCCCTGTAACACTC-TATGT  1297
      ||||||| | ||||||| || |  ||| ||   |||| |||||| |||||
seq2  CTGTTTG-TCATAAATGCTTCCTGGATGGT---CTGT-ACACTCTTATGT  1138

seq1  ACACCCATGCATG-TCAGCA-TAAGTGGGGG---AAAGG  1331
      ||||||||||||| |||||| ||||||||||   |||||
seq2  ACACCCATGCATGTTCAGCATTAAGTGGGGGGTAAAAGG  1177

seq1: chr4_145701418_145702580
seq2: B6Ng01-186K07.g_70_1221 (reverse)

seq1  TGACTTC-TGAGTACCAGGAGACTTTTTACTTCAGATGTTAACACAGGCA  49
      ||||||| |||||| ||||||||||||||| ||||||||||   ||||||
seq2  TGACTTCTTGAGTA-CAGGAGACTTTTTAC-TCAGATGTTA--CCAGGCA  46

seq1  CTGGGAAAGATTTTCTCTGAGTGCTGTAGGAATTTCATTGGCTATAACCC  99
      || || |||| ||||||||||||||||||    |||| ||||||| ||||
seq2  CT-GGCAAGA-TTTCTCTGAGTGCTGTAG---ATTCAATGGCTAT-ACCC  90

seq1  ACA-ACACACCCACAACCAGTGCTGAAATAATTACAGAGAGGTATTGAAC  148
      ||| |||| ||  ||| |||||||||||||| ||||||||||||||| ||
seq2  ACACACACCCCACCAAACAGTGCTGAAATAA-TACAGAGAGGTATTG-AC  138

seq1  TAGATTTCTTTTTTGTCTCATGGATTGTTACGCTACCAGAACTAGTGTTT  198
      ||||||||||||||||||||| |||  |||  ||||||||||  ||| ||
seq2  TAGATTTCTTTTTTGTCTCATAGATGTTTATTCTACCAGAACCTGTG-TT  187

seq1  GCAGAGACTCCCACATTTATATCACCTATCCAGTAAACATCAATCATCAT  248
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAGAGACTCCCACATTTATATCACCTATCCAGTAAACATCAATCATCGT  237

seq1  CTTTCATTCTAAGTAATGAACTCAGAGTTGAGCCAAAAAATTTCTTCCCC  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCTGAGTAATGAACTCAGAGTTGAGCCAAAAAATTTCTTCCCC  287

seq1  TTTGAAATTTTAGCTTTTTGATATCTTCACTCATAATGACCAATAGGAAA  348
      ||||||||||||||||||||||||||||||| |||| |||| ||||||||
seq2  TTTGAAATTTTAGCTTTTTGATATCTTCACTTATAACGACCCATAGGAAA  337

seq1  ATATACTTTATCAGCAATCAGCAAAATATTTCACACAAAAATTGCACAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTATCAGCAATCAGCAAAATATTTCACACAAAAATTGCACAAA  387

seq1  CATAGATCAGAAATTTGAGACTAGATAGGGTGATGTACAAATACTAATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCAGAAATTTGAGACTAGATAGGGTGATGTACAAATACTAATGC  437

seq1  TTGGACCAGTTGTTTTGAAATATATTATAACTTTTACCTTAGCTTTTTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCAGTTGTTTTGAAATATATTATAACTTTTACCTTAGCTTTTTGG  487

seq1  GGGCAGATTTGTCAATTAGTGAGTCTATGGATTTTGTTTGTTTGTTTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATTTGTCAATTAGTGAGTCTATGGATTTTGTTTGTTTGTTTATT  537

seq1  TGCTTGTTTGTTTTCCTACTGAGATACAGAAAGGGGTTAGATCCAGAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTGTTTTCCTACTGAGATACAGAAAGGGGTTAGATCCAGAAGG  587

seq1  GAGAAAAAGTGGACAGGAACTGAGAAGAATAGAGGGAATGGAAACTCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGTGGACAGGAACTGAGAAGAATAGAGGGAATGGAAACTCTTC  637

seq1  AAGATATATTGGATGAGAAAACAATCTTCGTCATTTTGGATAGATTCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATATTGGATGAGAAAACAATCTTCGTCATTTTGGATAGATTCTTA  687

seq1  GTGATGTCTTTTGGATTCAGTATTTGAGTATTTTATTGAGTATTTTGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCTTTTGGATTCAGTATTTGAGTATTTTATTGAGTATTTTGCAT  737

seq1  CAATGTACATAAGGGGAATTGTTCTGAAAGTGTCCACAATGACATGAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACATAAGGGGAATTGTTCTGAAAGTGTCCACAATGACATGAGCA  787

seq1  TACTTCAGCCTCTCAAATTAGGGTTGTGAGCATTACTAATGTACAAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGCCTCTCAAATTAGGGTTGTGAGCATTACTAATGTACAAAACA  837

seq1  TGATTTTGCAACAGTACTGTGTGAGTCACAAGGGTCACAAATATTAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGCAACAGTACTGTGTGAGTCACAAGGGTCACAAATATTAAATT  887

seq1  TTGTACATGAAGAGCACTCCACTTCTGTTCAGGAGTCTGTTTGTTGTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATGAAGAGCACTCCACTTCTGTTCAGGAGTCTGTTTGTTGTCAT  937

seq1  TGTTGTTATTGAAACTCATTTTATAAATGCTGCATATTAGTGGAAGTTTG  998
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTTGTTATTGAAACTCATTTTATAAATGCTGCATATTAATGGAAGTTTG  987

seq1  CATAAAACATTTGTGCTTCCTTTAGGTCGATATTTCCAAGGAAAGAGAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACATTTGTGCTTCCTTTAGGTCGATATTTCCAAGGAAAGAGAAC  1037

seq1  GTGTTAATCTGTATCTGCCTTTGCATTTCCCTCAGACAAATGTCCTACAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATCTGTATCTGCCTTTGCATTTCCCTCAGACAAATGTCCTACAA  1087

seq1  GATTAGACTGGGACACAATATGGAAAAAAAACTGGTCTCTAGAGTCTACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGACTGGGACACAATATGGAAAAAAAACTGGTCTCTAGAGTCTACA  1137

seq1  AAAAGAAAAGAATTC  1163
      |||||||||||||||
seq2  AAAAGAAAAGAATTC  1152