BAC Information

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BAC

Clone NameB6Ng01-186K18
Chromosome4 (Build37)
Map Location 25,315,742 - 25,453,831
singlet/doubletdoublet
Overlap genenone
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
Downstream geneLOC625732, Fut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K18.bB6Ng01-186K18.g
ACCGA011451GA011452
length6841,137
definitionB6Ng01-186K18.b B6Ng01-186K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,315,742 - 25,316,425)(25,452,687 - 25,453,831)
sequence
gaattcttaaggaaatgtcaaatttacatgataatatcgatgacttattt
tagacagctttaactaatttgctcttcatttttttttccagcttaatatt
tcctgacatttgaactagacaatggctgaatacaaatgttttacgtgctc
tttagtggagatacctactgcaagatgattattaaaaaggctatgaatca
ttcctttctctaaaatattcagttccttccactgattgcgattagctctt
catgttattttaattagaggaaaacatggctgctaaaaaaatcagactaa
gtgtctataaataaaagtatccatcttgcagagttaaattttaattaacc
tttagcatcccaacctttccagtagaatttgtcaggatttgtgaccattt
atttcatgcaaaagcaacaccgactgttttttgtacatataatctaaatc
tgagggaaaatagagagacaaagggaaagagagaaagagagtaagagaaa
aggagcaacccatggctccagctgtagcagaggatggccttgttggatat
caatggaaggagaggcccttggtcctgggaaggctctgttccccagcata
ggggaatgccagggctgtgaggtgggagtagataggtgggtgagaaccct
aatagaagcagggggagggaggatgggataggaa

gaattcattcactgagggtcttataaggagcatgtcccctgtgacaatta
agacattcttgactgaacgaaaacacgagaaaaacatgccgagcttcatg
ttaaggacacaattctaccctcattttcagttttaccacgtttaaaagct
aatctaatgggaggacagtatctacattaacaatgtttatttcatcattt
gcaatccaacaccaatatttcacactaacatgggaaggaaaatgcaaatg
agcaaagcaagacagatacatgatctgggccaacagaaggaagaggaaag
gtgggtggccagggaaggcaactccccagagtctggagcattgtgaccat
atctctcatgaacagatctggaaaggtcagagcattaatcctgaggctcc
cctgtggactcatttctgtgtgcctattttcttccactgtcaagtcttca
attccaaatgcataaagagaaaaaaagcaattaccaagagaaaatgagaa
cagcactaactgttgttttcctttgattggtggctctatgccactcagtt
atttttagctatcagcttgaagatactgacttcacttccacaactgctaa
tcagcatacttttctcttgtggttctaatactgtaaatatgacacacaga
caatgtttggaaatgtatataataatgaatattaatttatatacaaaata
ctctaactcaaatcagcctaaagtttgctgtaatgaattgagttcacgtg
atggctaatgacaatgatgacttccttacttcatgaatcacttagctcct
taaactcccccagtattgatccaagtgaattttaaatcaactatgagttc
tgttttgaatgagattaacatgagtattatcttgaatgctgaggagtact
gtgataattattatataaaatttttctgtttccacattgagctaaacatt
cccttaattgtcattttagcaagaatatgagtcaatgctaaactctgtag
cttctgtttaaaaccattcttctttggaacatacaatgcattttattcaa
gtagaaataaactaaaattaataaataaggtccacaatttcaattcagaa
atactagctacaaggtttctaggagaacctagagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25315742_25316425
seq2: B6Ng01-186K18.b_41_724

seq1  GAATTCTTAAGGAAATGTCAAATTTACATGATAATATCGATGACTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGAAATGTCAAATTTACATGATAATATCGATGACTTATTT  50

seq1  TAGACAGCTTTAACTAATTTGCTCTTCATTTTTTTTTCCAGCTTAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCTTTAACTAATTTGCTCTTCATTTTTTTTTCCAGCTTAATATT  100

seq1  TCCTGACATTTGAACTAGACAATGGCTGAATACAAATGTTTTACGTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACATTTGAACTAGACAATGGCTGAATACAAATGTTTTACGTGCTC  150

seq1  TTTAGTGGAGATACCTACTGCAAGATGATTATTAAAAAGGCTATGAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGAGATACCTACTGCAAGATGATTATTAAAAAGGCTATGAATCA  200

seq1  TTCCTTTCTCTAAAATATTCAGTTCCTTCCACTGATTGCGATTAGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTCTAAAATATTCAGTTCCTTCCACTGATTGCGATTAGCTCTT  250

seq1  CATGTTATTTTAATTAGAGGAAAACATGGCTGCTAAAAAAATCAGACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTTAATTAGAGGAAAACATGGCTGCTAAAAAAATCAGACTAA  300

seq1  GTGTCTATAAATAAAAGTATCCATCTTGCAGAGTTAAATTTTAATTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATAAATAAAAGTATCCATCTTGCAGAGTTAAATTTTAATTAACC  350

seq1  TTTAGCATCCCAACCTTTCCAGTAGAATTTGTCAGGATTTGTGACCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATCCCAACCTTTCCAGTAGAATTTGTCAGGATTTGTGACCATTT  400

seq1  ATTTCATGCAAAAGCAACACCGACTGTTTTTTGTACATATAATCTAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCAAAAGCAACACCGACTGTTTTTTGTACATATAATCTAAATC  450

seq1  TGAGGGAAAATAGAGAGACAAAGGGAAAGAGAGAAAGAGAGTAAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAAATAGAGAGACAAAGGGAAAGAGAGAAAGAGAGTAAGAGAAA  500

seq1  AGGAGCAACCCATGGCTCCAGCTGTAGCAGAGGATGGCCTTGTTGGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAACCCATGGCTCCAGCTGTAGCAGAGGATGGCCTTGTTGGATAT  550

seq1  CAATGGAAGGAGAGGCCCTTGGTCCTGGGAAGGCTCTGTTCCCCAGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGGAGAGGCCCTTGGTCCTGGGAAGGCTCTGTTCCCCAGCATA  600

seq1  GGGGAATGCCAGGGCTGTGAGGTGGGAGTAGATAGGTGGGTGAGAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGCCAGGGCTGTGAGGTGGGAGTAGATAGGTGGGTGAGAACCCT  650

seq1  AATAGAAGCAGGGGGAGGGAGGATGGGATAGGAA  684
      ||||||||||||||||||||||||||||||||||
seq2  AATAGAAGCAGGGGGAGGGAGGATGGGATAGGAA  684


seq1: chr4_25452687_25453831
seq2: B6Ng01-186K18.g_65_1201 (reverse)

seq1  TGACTTCTAGTTTCTCCTAGAAACTTGGTAGCTAGTTTTTTCTGAATGGA  50
      |||| ||||| ||||||||||||| | |||||||| | ||||||||| ||
seq2  TGAC-TCTAGGTTCTCCTAGAAACCTTGTAGCTAG-TATTTCTGAATTGA  48

seq1  AAATGTGGACCTTATTTTTATTTATTTTTTTGTTTTATTTCTACTTGAAA  100
      || |||||||||||  |||||| |   ||||  |||||||||||||||| 
seq2  AATTGTGGACCTTA--TTTATTAA---TTTTAGTTTATTTCTACTTGAA-  92

seq1  TTAAATTGCATTTGTATGTT-CAAAGAAGAAATGGTTTTAAACAGAGCTT  149
       |||| |||| ||||||||| |||||||| ||||||||||||||||   |
seq2  -TAAAATGCA-TTGTATGTTCCAAAGAAG-AATGGTTTTAAACAGAAGCT  139

seq1  ACAGAGTTTAGCATTTGACTCATATTCTTGCTAAAATGACAATTAA-GGA  198
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  ACAGAGTTTAGCA-TTGACTCATATTCTTGCTAAAATGACAATTAAGGGA  188

seq1  ATGTTTAGCTCAATGTGGAAACAGAAAA--TTTATATAATAATTATCACA  246
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATGTTTAGCTCAATGTGGAAACAGAAAAATTTTATATAATAATTATCACA  238

seq1  GTACTCCTCAGCATTCAAGATAATACTCATGTTAATCTCATTCAAAACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTCAGCATTCAAGATAATACTCATGTTAATCTCATTCAAAACAG  288

seq1  AACTCATAGTTGATTTAAAATTCACTTGGATCAATACTGGGGGAGTTTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATAGTTGATTTAAAATTCACTTGGATCAATACTGGGGGAGTTTAA  338

seq1  GGAGCTAAGTGATTCATGAAGTAAGGAAGTCATCATTGTCATTAGCCATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAGTGATTCATGAAGTAAGGAAGTCATCATTGTCATTAGCCATC  388

seq1  ACGTGAACTCAATTCATTACAGCAAACTTTAGGCTGATTTGAGTTAGAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAACTCAATTCATTACAGCAAACTTTAGGCTGATTTGAGTTAGAGT  438

seq1  ATTTTGTATATAAATTAATATTCATTATTATATACATTTCCAAACATTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATATAAATTAATATTCATTATTATATACATTTCCAAACATTGT  488

seq1  CTGTGTGTCATATTTACAGTATTAGAACCACAAGAGAAAAGTATGCTGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTCATATTTACAGTATTAGAACCACAAGAGAAAAGTATGCTGAT  538

seq1  TAGCAGTTGTGGAAGTGAAGTCAGTATCTTCAAGCTGATAGCTAAAAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTGTGGAAGTGAAGTCAGTATCTTCAAGCTGATAGCTAAAAATA  588

seq1  ACTGAGTGGCATAGAGCCACCAATCAAAGGAAAACAACAGTTAGTGCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGGCATAGAGCCACCAATCAAAGGAAAACAACAGTTAGTGCTGT  638

seq1  TCTCATTTTCTCTTGGTAATTGCTTTTTTTCTCTTTATGCATTTGGAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTCTCTTGGTAATTGCTTTTTTTCTCTTTATGCATTTGGAATT  688

seq1  GAAGACTTGACAGTGGAAGAAAATAGGCACACAGAAATGAGTCCACAGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTGACAGTGGAAGAAAATAGGCACACAGAAATGAGTCCACAGGG  738

seq1  GAGCCTCAGGATTAATGCTCTGACCTTTCCAGATCTGTTCATGAGAGATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGGATTAATGCTCTGACCTTTCCAGATCTGTTCATGAGAGATA  788

seq1  TGGTCACAATGCTCCAGACTCTGGGGAGTTGCCTTCCCTGGCCACCCACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAATGCTCCAGACTCTGGGGAGTTGCCTTCCCTGGCCACCCACC  838

seq1  TTTCCTCTTCCTTCTGTTGGCCCAGATCATGTATCTGTCTTGCTTTGCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCCTTCTGTTGGCCCAGATCATGTATCTGTCTTGCTTTGCTC  888

seq1  ATTTGCATTTTCCTTCCCATGTTAGTGTGAAATATTGGTGTTGGATTGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTTCCTTCCCATGTTAGTGTGAAATATTGGTGTTGGATTGCA  938

seq1  AATGATGAAATAAACATTGTTAATGTAGATACTGTCCTCCCATTAGATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAAATAAACATTGTTAATGTAGATACTGTCCTCCCATTAGATTA  988

seq1  GCTTTTAAACGTGGTAAAACTGAAAATGAGGGTAGAATTGTGTCCTTAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAACGTGGTAAAACTGAAAATGAGGGTAGAATTGTGTCCTTAAC  1038

seq1  ATGAAGCTCGGCATGTTTTTCTCGTGTTTTCGTTCAGTCAAGAATGTCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCGGCATGTTTTTCTCGTGTTTTCGTTCAGTCAAGAATGTCTT  1088

seq1  AATTGTCACAGGGGACATGCTCCTTATAAGACCCTCAGTGAATGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCACAGGGGACATGCTCCTTATAAGACCCTCAGTGAATGAATTC  1137


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