BAC Information

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BAC

Clone NameB6Ng01-187A01
Chromosome3 (Build37)4 (Build37)
Map Location 96,460,867 - 96,461,419146,365,274 - 146,365,720
singlet/doubletsingletsinglet
Overlap geneItga10
Upstream geneMcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b
Downstream geneAnkrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187A01.bB6Ng01-187A01.g
ACCGA011697GA011698
length547616
definitionB6Ng01-187A01.b B6Ng01-187A01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,460,867 - 96,461,419)(146,365,274 - 146,365,720)
sequence
agggccaggacccattgggagagtcctataagggtgaacctcataccgat
gcagagtggactcactgtgtagacaccaagccaggaggtgtaaggtcaca
gccatgacatagacacaggacacatgatcagcatacaaacatggattcag
ggaaagtagggtcaaggataatgagataggaggggataagaaggaaatta
aatatcacaaaggtttgattttgaaagaaagatgtttggccataacccta
catttgtttatcccagttctaatgcccaggacctgacaacaagatgctta
agaggaaaggttgactatgagtgggagtgaggaccaaaagactgagtaac
ccaaggactgtgttcctgggaacgctaaagcacaaggaaggacagcaaga
aagaacaatggatgccaatctgttcaatcagggtcataacggggcatcag
ccaggagccagccttacctggagaacaccaggtgaggttcgtaccggatg
taggcagaggtctgagctgtgttatcttgcagggtctcatacatctc
gaattccctacccaggaatggctgctgcacagagaacacaggtgtcctct
ctgtcacagggtctgcagcgtggataagtaccgaggatgtaacgtatata
gaatcagatttttttgttgttttgtttgtttttgttgttgttgttgttgt
tgtttgggtgtttgttattaactttatgatacaggtttgcaaaaatattc
atgacttcagtctatgttttatgtgaggcatttcctgggaagatgcaaca
tatattcatctcagtatcccaagtgcaaattggaaacaaccaaagcaaat
ttgttgaatctttcagttttattggagttagttacaggacaataaaaata
tacaaaatgctaccagttttattacctattttgagggttgtattaaagac
cttaaatagtttccttttgaaatggattatttctgtctcaatgaaagtgt
tatacaatactatattctgacttcctaactttatcttcatcttataacgt
ttgagggtgaacaagtaaaaaggtgtcatgaaaagctttctacattttca
cattttcagagttttctcccaacacaaatagttaacattatctaagattt
tgaacatttgcatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96460867_96461419
seq2: B6Ng01-187A01.b_47_599 (reverse)

seq1  GAGATGAATGAGACCCTTCAAGATAACACAGCTCAGACCTCTGCCTACAT  50
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGATGTATGAGACCCTGCAAGATAACACAGCTCAGACCTCTGCCTACAT  50

seq1  CCGGTACGAACCTCACCTCGTGTTCTCCAGGTATGGCTGGCTCCTGGCTG  100
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CCGGTACGAACCTCACCTGGTGTTCTCCAGGTAAGGCTGGCTCCTGGCTG  100

seq1  ATGCCCCGTTCTGACCCTGATTGAACAGATTGGCATCCATTGTGCTTTCT  150
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  ATGCCCCGTTATGACCCTGATTGAACAGATTGGCATCCATTGTTCTTTCT  150

seq1  TGCTGTCCTTCCTTGTGCTTTAGCGTTCCCAGGAACACAGTCCTTGGGCT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTGTCCTTCCTTGTGCTTTAGCGTTCCCAGGAACACAGTCCTTGGGTT  200

seq1  ACTCAGTCTTTTGGTCCTCACTCCCACTCATAGTCAACCTTTCCTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCTTTTGGTCCTCACTCCCACTCATAGTCAACCTTTCCTCTTAA  250

seq1  GCATCTTGTTGTCAGGTCCTGGGCATTAGAACTGGGATAAACAAATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGTTGTCAGGTCCTGGGCATTAGAACTGGGATAAACAAATGTAG  300

seq1  GGTTATGGCCAAACATCTTTCTTTCAAAATCAAACCTTTGTGATATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGCCAAACATCTTTCTTTCAAAATCAAACCTTTGTGATATTTAA  350

seq1  TTTCCTTCTTATCCCCTCCTATCTCATTATCCTTGACCCTACTTTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTATCCCCTCCTATCTCATTATCCTTGACCCTACTTTCCCTG  400

seq1  AATCCATGTTTGTATGCTGATCATGTGTCCTGTGTCTATGTCATGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGTTTGTATGCTGATCATGTGTCCTGTGTCTATGTCATGGCTGT  450

seq1  GACCTTACACCTCCTGGCTTGGTGTCTACACAGTGAGTCCACTCTGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTACACCTCCTGGCTTGGTGTCTACACAGTGAGTCCACTCTGCATC  500

seq1  GGTATGAGGTTCACCCTTATAGGACTCTCCCAATGGGTCCTGGCCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGGTTCACCCTTATAGGACTCTCCCAATGGGTCCTGGCCCTGAA  550

seq1  TTC  553
      |||
seq2  TTC  553

seq1: chr4_146365274_146365720
seq2: B6Ng01-187A01.g_227_677 (reverse)

seq1  TTCATGC-AATGTTC-AAATCTTAGATAATGTCAACTATTTATGTTGGGA  48
      ||||||| ||||||| |||||||||||||||| |||||||| ||||||||
seq2  TTCATGCAAATGTTCAAAATCTTAGATAATGTTAACTATTTGTGTTGGGA  50

seq1  G-AAACTCTGAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTT  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCTGAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTT  100

seq1  ACTTGTTCACCCTCAAACGTTATAAGATGAAGAT-AAGTTAGGAAGTCAG  146
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTTGTTCACCCTCAAACGTTATAAGATGAAGATAAAGTTAGGAAGTCAG  150

seq1  AAGATAGTATTGTATAACACTTTCATTGAGACAGAAATAATCCATTTCAA  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTATTGTATAACACTTTCATTGAGACAGAAATAATCCATTTCAA  200

seq1  AAGGAAACTATTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTATTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAA  250

seq1  CTGGTAGCATTTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCATTTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAA  300

seq1  CTGAAAGATTCAACAAATTTGCTTTGGTTGTTTCCAATTTGCAGTTGGGA  346
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAAAGATTCAACAAATTTGCTTTGGTTGTTTCCAATTTGCACTTGGGA  350

seq1  TACTCAGATGAATATATGTTGCACCTTCCCAGGAAATGCCTCAAATAAAA  396
      |||| |||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TACTGAGATGAATATATGTTGCATCTTCCCAGGAAATGCCTCACATAAAA  400

seq1  CATAGACTGAAGTCATGAACATTTTTGCAAACCTGTATCATAAAGTTAAT  446
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATAGACTGAAGTCATGAATATTTTTGCAAACCTGTATCATAAAGTTAAT  450

seq1  A  447
      |
seq2  A  451