BAC Information

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BAC

Clone NameB6Ng01-187E14
Chromosome4 (Build37)6 (Build37)
Map Location 43,346,975 - 43,347,34820,855,742 - 20,856,822
singlet/doubletsingletsinglet
Overlap gene4930417M19Rik
Upstream geneLOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b
Downstream geneRusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187E14.bB6Ng01-187E14.g
ACCGA011903GA011904
length9551,081
definitionB6Ng01-187E14.b B6Ng01-187E14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,346,975 - 43,347,348)(20,855,742 - 20,856,822)
sequence
gaattcttggtttaggtctatactccattttttaattggtttgtttgttt
gtttgttttttgttttgtttgtttgtttgtttttggtggttagcttcttg
agttatatattttagatattagccctctatcagatatggggttagtgaag
atttttttttcccaatctataggttctggatttctcttattgactaaatg
ctttgccttacagaagctttctagtttcatgagttcacatttatcaataa
ttacagcataagccattggagttctgtttaggaaatttccccctgcgcca
attagttcaaggctctttctcactttctcttctattacattcaatgtatc
tggttttacgttgatgtccttgatccacttggacttgaactttgtgcaag
gttacaaatatgggtattttcttttatttttacacatatccagttggacc
agcaccatttattgaagatgctttctttttgtccactatatattttggct
tctttgttaaagatcaagtctgtatatgtttgtggttttatttctgggtt
ttcaattctatttcactgatcaacatctctgtctctgtaccaataccatg
tggttatttttatcactattgctctatagtaagcttgaggtcagggatag
tgatttcccaagccattcttttattgttaagaattggttttgctattctg
ggctttttgcctttacagatgaatttgacaattggtttttttttttgttt
ttttgttttttgttttttgttttttgttttttttcccatgccatcaacag
ctgaaggaccccacgtgaggaaatctcagtcccacctgggagagagaaga
aagcaaccacaggtaggagggacagacctgggagggaaaggagacagggg
gtgagggggaacatgatcctcatactgggtgggggaaagaacttatcccc
cggaa
gaattcattttaggagagtctagaaataaccatgttcttgagtcagttaa
tttctggaagcatctaggttgctggggttggttcactgagattctcatcc
tctttttgactgttcccatgttggtaggtgcaatcttttgggtcattgaa
cctgggaacctgcaccagaaacatgcataaattcttctgaagttaggaat
ttcctgggtcgttttgcttcatctctgttaatttgctggataggttgtcc
atattcatggaccacttatgaggatatctcaggacttgtatcctggcttc
atttctgcaatcttaactacatctggacatctcttgctcctattcagttt
acctgaattttccaagacttatattcaagggctcactgttttatcactcc
atacttagggctatccaatctgtcatgttagttctactgttggattattt
tagtgctccttatgacaaggaaggctgctttgcattgagaactgactact
aaacaatgcattataatcattctacggttcaatagtcttatgcataatga
ccaaagggaaatattttaatagatttaaaataacttattttcccttatca
tttttgaggagtgtacttgaaaatatagtttcaaaatcacataacaattt
atttgcccatttgctaaaaagttacatcactttttcagtgcttttagtct
ctcatataacgaaattttatcccatcagtttttttcaaattcaccatatt
tgaatttacacctaatcacctctataaacactctatatttgtatattgct
tttgtagttcacaagtgcttaaaatatacaacctaaattcaatctgtgtg
acataaataatttgtgtcattttgaagtagagaatataaagatttaaaga
cactaactctacctaaaaaatccatgcatattaaatacttttttatgttt
aagtccttgataaaccataccaaattaaagtacatttttgcattaataca
ttttacatacttatttaattctctatcttacttgtaagtttgtagcatta
ttttataaaagcatcatattgaaatatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43346975_43347348
seq2: B6Ng01-187E14.b_785_834

seq1  GTTTTTTTTTTTGTTTTTGTTTTGTTTTTT-TTTTCTGTACAGATTTTCA  49
      ||||||||||||||||   ||||||||||| |||| |||     ||||  
seq2  GTTTTTTTTTTTGTTT---TTTTGTTTTTTGTTTTTTGT----TTTTTGT  43

seq1  TGTTTTTAGGTGGAATGTGTTTTCTGCTGTCGATTGGACATGGCATCTGG  99
      | |||||                                           
seq2  TTTTTTT-------------------------------------------  50

seq1  GAGAACAGCAGAGGCTACTATTTCCAGGCCTTTCTCCCATGGAAACATTA  149
                                                        
seq2  --------------------------------------------------  50

seq1  TATTACCTCATCGGCTACGAGTTCTGCCCTCATTTTCTGGTCCTACTTCA  199
                                                        
seq2  --------------------------------------------------  50

seq1  TAGTGCTCAACACCATGGTACCCATTTCCCTCTATGTCAGGTGGGCATCT  249
                                                        
seq2  --------------------------------------------------  50

seq1  TTGACTATTTCTGTACAGGGGAGGGCATGACCTTCCTCTTCCTGCTTTAA  299
                                                        
seq2  --------------------------------------------------  50

seq1  TAATCAACTAGAGTATGGTATTTTAGAAAGCATGTGGTTTTTTTTTAGTT  349
                                                        
seq2  --------------------------------------------------  50

seq1  TGTTTTTTGTTTTTTGTTTTGTTTT  374
                               
seq2  -------------------------  50

seq1: chr6_20855742_20856822
seq2: B6Ng01-187E14.g_65_1145 (reverse)

seq1  ACACATATTTCATATTGATGCTTTTATAAAAT-ATGCTACAAACTTTACA  49
      ||||||||||||   ||||||||||||||||| ||||||||||| |||| 
seq2  ACACATATTTCAATATGATGCTTTTATAAAATAATGCTACAAAC-TTAC-  48

seq1  AAGGTAGATAGAGAATTAAATAAGTATGTAAAATGTATTAATGCAAAAAT  99
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGATAGAGAATTAAATAAGTATGTAAAATGTATTAATGCAAAAAT  98

seq1  GTAACTTTTAATTTGGTATGGTTTATCAAGGACTTAAACAT-AAAAAGTA  148
      |||   ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTA--CTTTAATTTGGTATGGTTTATCAAGGACTTAAACATAAAAAAGTA  146

seq1  TTTAATATGCATGGATTTTTTAGGTAGAGTTAGTGTCTTTAAATCTTTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATGCATGGATTTTTTAGGTAGAGTTAGTGTCTTTAAATCTTTAT  196

seq1  ATTCTCTACTTCAAAATGACAC-AATTATTTATGTCACACAGATTGAA-T  246
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  ATTCTCTACTTCAAAATGACACAAATTATTTATGTCACACAGATTGAATT  246

seq1  TAGGTTGTATATTTTAAGCACTTGTGAACTACAAAAGCAATATACAAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTATATTTTAAGCACTTGTGAACTACAAAAGCAATATACAAATA  296

seq1  TAGAGTGTTTATAGAGGTGATTAGGTGTAAATTCAAATATGGTGAATTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTTTATAGAGGTGATTAGGTGTAAATTCAAATATGGTGAATTTG  346

seq1  AAAAAAACTGATGGGATAAAATTTCGTTATATGAGAGACTAAAAGCACTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTGATGGGATAAAATTTCGTTATATGAGAGACTAAAAGCACTG  396

seq1  AAAAAGTGATGTAACTTTTTAGCAAATGGGCAAATAAATTGTTATGTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGATGTAACTTTTTAGCAAATGGGCAAATAAATTGTTATGTGAT  446

seq1  TTTGAAACTATATTTTCAAGTACACTCCTCAAAAATGATAAGGGAAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTATATTTTCAAGTACACTCCTCAAAAATGATAAGGGAAAATA  496

seq1  AGTTATTTTAAATCTATTAAAATATTTCCCTTTGGTCATTATGCATAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTAAATCTATTAAAATATTTCCCTTTGGTCATTATGCATAAGA  546

seq1  CTATTGAACCGTAGAATGATTATAATGCATTGTTTAGTAGTCAGTTCTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAACCGTAGAATGATTATAATGCATTGTTTAGTAGTCAGTTCTCA  596

seq1  ATGCAAAGCAGCCTTCCTTGTCATAAGGAGCACTAAAATAATCCAACAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGCAGCCTTCCTTGTCATAAGGAGCACTAAAATAATCCAACAGT  646

seq1  AGAACTAACATGACAGATTGGATAGCCCTAAGTATGGAGTGATAAAACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAACATGACAGATTGGATAGCCCTAAGTATGGAGTGATAAAACAG  696

seq1  TGAGCCCTTGAATATAAGTCTTGGAAAATTCAGGTAAACTGAATAGGAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTTGAATATAAGTCTTGGAAAATTCAGGTAAACTGAATAGGAGC  746

seq1  AAGAGATGTCCAGATGTAGTTAAGATTGCAGAAATGAAGCCAGGATACAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGTCCAGATGTAGTTAAGATTGCAGAAATGAAGCCAGGATACAA  796

seq1  GTCCTGAGATATCCTCATAAGTGGTCCATGAATATGGACAACCTATCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGATATCCTCATAAGTGGTCCATGAATATGGACAACCTATCCAG  846

seq1  CAAATTAACAGAGATGAAGCAAAACGACCCAGGAAATTCCTAACTTCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAACAGAGATGAAGCAAAACGACCCAGGAAATTCCTAACTTCAGA  896

seq1  AGAATTTATGCATGTTTCTGGTGCAGGTTCCCAGGTTCAATGACCCAAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTATGCATGTTTCTGGTGCAGGTTCCCAGGTTCAATGACCCAAAA  946

seq1  GATTGCACCTACCAACATGGGAACAGTCAAAAAGAGGATGAGAATCTCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCACCTACCAACATGGGAACAGTCAAAAAGAGGATGAGAATCTCAG  996

seq1  TGAACCAACCCCAGCAACCTAGATGCTTCCAGAAATTAACTGACTCAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAACCCCAGCAACCTAGATGCTTCCAGAAATTAACTGACTCAAGA  1046

seq1  ACATGGTTATTTCTAGACTCTCCTAAAATGAATTC  1081
      |||||||||||||||||||||||||||||||||||
seq2  ACATGGTTATTTCTAGACTCTCCTAAAATGAATTC  1081