BAC Information

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BAC

Clone NameB6Ng01-188A13
Chromosome4 (Build37)
Map Location 138,729,454 - 138,871,916
singlet/doubletdoublet
Overlap gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4
Downstream geneLOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188A13.bB6Ng01-188A13.g
ACCGA012447GA012448
length1,0921,159
definitionB6Ng01-188A13.b B6Ng01-188A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,729,454 - 138,730,555)(138,870,761 - 138,871,916)
sequence
gaattcacacagacatttcctttctttttttttttttttttggtgctttg
aggcagggttttatgtagcccaggctggcccaacaccccatgtgaagaca
gaggacagaggaggaccttgaacttccgatccttgagtctctctctgcct
cccaagtgctgggacgacaggcctgcagcactaggcctgttttactcagt
gctggggattgaactcagggcttcttgcacgctaggcaaatgctttaccc
actcagctacatcttcatccttgacttacatttcaaatggatcgctttgg
tctgctgggattgcaggcatgcaccaccatggctggcatcagttcatgac
attttgttatacttgaacagactctgacccttgctgggggccaaggaggg
ctccatgaaccagggccgtcatagaatcccatggaagaagtatcctccaa
gaggctgcttttatccacaggaaggcagatgctgcagctacagtgtgcaa
gacagaaaggcaaacactgggaggaacacaagcaatccttttagatttgt
gttatcttaaattacatacacgtgtgagtgtctgcatacggtgtgtgctt
gtgaatgccgtcgcttgcagagaacggaggcaaatgatttccgggagttg
gagttatagatggttgtaagctgcctaatgtgggacctggaaacatcacc
ccagtcttctagaagagcagcaagggctcttaaccgctgacccatctcca
cgacagcctccaacagaaacagtgtagcttatgtctgaatgtcaaagaaa
ggttccgtgaaacagaaattgtacaccgaactcaggcaagaacgtagtct
tccagagtgagttccaggacagccagggctacacagagaaaccctgtctt
gaaaaaagatggaaaaaaaaaaaagaatgtaatcttccctcactattgcc
tggtgggcctcagtgggagaggatatgtctagcactagtggactagatgt
ccaaagcaagtggtactcagggggcttcccttctttgtggagaagtaggg
ttatgacagagaagtttgtaaggatttggactgggaaggggg
gaattcaggtcctcgtggctatacagcatgcatattttatctattaagtc
tggtggggtttttgttgttgttgttttgaaacagtcttgctctgtagccc
atatttgcctttaacttagtgagcttcctgcctcagccttccaaagtgct
ggatcacaggtgtgtgacacaggcctggctttgcagtcttgtattttgaa
atctctatactgaccccatcccaggttcagttatgtctaagatctctggc
agggagagggtgtcgggtgcagggagcagaagctggccaggatcagcatc
agtctacagctttccccaggcctcctctacgggctggatgctgaattcac
aactatttaaaagtttagcaaattctctgcttccaagaggtggaatcacg
aaatccaaactacagacagcaggctgaggtgtcactcagtgacagcacct
gctggcatagttaggtctcagaccctcaaaataaaccacagtaaggaaag
cccacagggaactgcggtgaagacgcgctctaaggcagatgtgctcagtg
cgtgaaggtagtggggttctagtggaatcactgtacctagggtcaacagt
ggaaagctgtttttcagtgtatctagggtagtcatcagaacaaagagttg
ctttctaggagtcccttgaccaggaggaaatcaccgtagaaagcagtaat
tgggttctgctatctgtagagttgcttttctgaaggcgctttacaacctg
cgcatgacttgggtcacaagagagtcctgacaatgctaggacctcttcca
ttcctgagtactgcaaagagttcccagtcaggattaaagctgcagggatg
tggtgttttccttcaggaaacacagagattagattaggggctttggtttg
aaaaaacacgttctacccccaaaacccttttgttaacaaccaataaacag
cgtctgcatggtggctgttggaagactcactgggatcgtcccctgcctca
gagcctgatcaccacctggcctgaccctctccctgtcttccttgatcatc
tgcttaaattcaaaacacccatggtgtgaaggtgtgggttcagaagactg
gtccctggggtcaaggggaatctgagggattccaggaagggtcattctag
gtttgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138729454_138730555
seq2: B6Ng01-188A13.b_43_1134

seq1  GAATTCACACAGACATTTCCTTTCTTTTTTTTTTTTTTTTTGGTGCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGACATTTCCTTTCTTTTTTTTTTTTTTTTTGGTGCTTTG  50

seq1  AGGCAGGGTTTTATGTAGCCCAGGCTGGCCCAACACCCCATGTGAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGTTTTATGTAGCCCAGGCTGGCCCAACACCCCATGTGAAGACA  100

seq1  GAGGACAGAGGAGGACCTTGAACTTCCGATCCTTGAGTCTCTCTCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGGAGGACCTTGAACTTCCGATCCTTGAGTCTCTCTCTGCCT  150

seq1  CCCAAGTGCTGGGACGACAGGCCTGCAGCACTAGGCCTGTTTTACTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGACGACAGGCCTGCAGCACTAGGCCTGTTTTACTCAGT  200

seq1  GCTGGGGATTGAACTCAGGGCTTCTTGCACGCTAGGCAAATGCTTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGATTGAACTCAGGGCTTCTTGCACGCTAGGCAAATGCTTTACCC  250

seq1  ACTCAGCTACATCTTCATCCTTGACTTACATTTCAAATGGATCGCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTACATCTTCATCCTTGACTTACATTTCAAATGGATCGCTTTGG  300

seq1  TCTGCTGGGATTGCAGGCATGCACCACCATGGCTGGCATCAGTTCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGATTGCAGGCATGCACCACCATGGCTGGCATCAGTTCATGAC  350

seq1  ATTTTGTTATACTTGAACAGACTCTGACCCTTGCTGGGGGCCAAGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTATACTTGAACAGACTCTGACCCTTGCTGGGGGCCAAGGAGGG  400

seq1  CTCCATGAACCAGGGCCGTCATAGAATCCCATGGAAGAAGTATCCTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAACCAGGGCCGTCATAGAATCCCATGGAAGAAGTATCCTCCAA  450

seq1  GAGGCTGCTTTTATCCACAGGAAGGCAGATGCTGCAGCTACAGTGTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCTTTTATCCACAGGAAGGCAGATGCTGCAGCTACAGTGTGCAA  500

seq1  GACAGAAAGGCAAACACTGGGAGGAACACAAGCAATCCTTTTAGATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAGGCAAACACTGGGAGGAACACAAGCAATCCTTTTAGATTTGT  550

seq1  GTTATCTTAAATTACATACACGTGTGAGTGTCTGCATACGGTGTGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTTAAATTACATACACGTGTGAGTGTCTGCATACGGTGTGTGCTT  600

seq1  GTGAATGCCGTCGCTTGCAGAGAACGGAGGCAAATGATTTCCGGGAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGCCGTCGCTTGCAGAGAACGGAGGCAAATGATTTCCGGGAGTTG  650

seq1  GAGTTATAGATGGTTGTAAGCTGCCTAATGTGGGACCTGGAAACATCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATAGATGGTTGTAAGCTGCCTAATGTGGGACCTGGAAACATCACC  700

seq1  CCAGTCTTCTAGAAGAGCAGCAAGGGCTCTTAACCGCTGACCCATCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTCTAGAAGAGCAGCAAGGGCTCTTAACCGCTGACCCATCTCCA  750

seq1  CGACAGCCTCCAACAGAAACAGTGTAGCTTATGTCTGAATGTCAAAG-AA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGACAGCCTCCAACAGAAACAGTGTAGCTTATGTCTGAATGTCAAAGAAA  800

seq1  GGTTCCGTGAAACAGAAATTGTACACCGAACTCAGGCAAGAACGTAGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGTGAAACAGAAATTGTACACCGAACTCAGGCAAGAACGTAGTCT  850

seq1  TCCAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTT  900

seq1  G-AAAAAGATGGAAAAAAAAAAAAGAATGTAATCTTCCCTCACTATTGCC  948
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGATGGAAAAAAAAAAAAGAATGTAATCTTCCCTCACTATTGCC  950

seq1  TGGTTGGGCCTCAGTGGGAGAGGATATGTCTAGCACTAGTGGGACTAGAT  998
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGG-TGGGCCTCAGTGGGAGAGGATATGTCTAGCACTAGT-GGACTAGAT  998

seq1  GTCCCAAGGCAGGGTGGTACCCAGGGGGGGCTCCCCTTCTTTGTGGAGAA  1048
      |||| |||  |  ||||||| ||  ||||||| ||||||||||||||| |
seq2  GTCCAAAGCAA--GTGGTACTCA--GGGGGCTTCCCTTCTTTGTGGAG-A  1043

seq1  AGTAAGGGGGTAATGACAGGAGAGGTTTGTAAGGATGTGGAACTGGGAAA  1098
      ||||   |||| |||||| |||| |||||||||||| ||| |||||||| 
seq2  AGTA---GGGTTATGACA-GAGAAGTTTGTAAGGATTTGG-ACTGGGAAG  1088

seq1  GGGG  1102
      ||||
seq2  GGGG  1092

seq1: chr4_138870761_138871916
seq2: B6Ng01-188A13.g_65_1223 (reverse)

seq1  GCTTC-AACCTAGAAGGCCCTTTCCTGGGAATCCCCTCAGATTTCCCCCT  49
      ||||| ||||||||| | || ||||| ||||| |||||||| |||||| |
seq2  GCTTCAAACCTAGAATGACCCTTCCT-GGAAT-CCCTCAGA-TTCCCCTT  47

seq1  GCCCCAGGGGCCCAGTC-TCTGAA-CCACACCTTCACA-CATGGGTGTTC  96
      | |||  ||| |||||| |||||| ||||||||||||| |||||||||| 
seq2  GACCCCAGGGACCAGTCTTCTGAACCCACACCTTCACACCATGGGTGTTT  97

seq1  TGAA-TTAAGCAGAATGATCAAAGGAAGACAGGGAGAGGGTCAGGCCAGG  145
      |||| |||||||| |||||| |||||||||||||||||||||||||||||
seq2  TGAATTTAAGCAG-ATGATC-AAGGAAGACAGGGAGAGGGTCAGGCCAGG  145

seq1  T-GTGATCAGGCTCTGAGGCAGGGGACGATCCCAGTGAGTC-TCCAACAG  193
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGTGATCAGGCTCTGAGGCAGGGGACGATCCCAGTGAGTCTTCCAACAG  195

seq1  CCACCATGCAGACGCTGTTTATTGGTTGTTAACAAAAGGGTTTTGGGGGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGCAGACGCTGTTTATTGGTTGTTAACAAAAGGGTTTTGGGGGT  245

seq1  AGAACGTG-TTTCTCAAACCAAAGCCCCTAATCTAATCTCTGTGTTTCCT  292
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  AGAACGTGTTTTTTCAAACCAAAGCCCCTAATCTAATCTCTGTGTTTCCT  295

seq1  GAAGGAAAACACCACATCCCTGCAGCTTTAATCCTGACTGGGAACTCTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAACACCACATCCCTGCAGCTTTAATCCTGACTGGGAACTCTTT  345

seq1  GCAGTACTCAGGAATGGAAGAGGTCCTAGCATTGTCAGGACTCTCTTGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACTCAGGAATGGAAGAGGTCCTAGCATTGTCAGGACTCTCTTGTG  395

seq1  ACCCAAGTCATGCGCAGGTTGTAAAGCGCCTTCAGAAAAGCAACTCTACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTCATGCGCAGGTTGTAAAGCGCCTTCAGAAAAGCAACTCTACA  445

seq1  GATAGCAGAACCCAATTACTGCTTTCTACGGTGATTTCCTCCTGGTCAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGAACCCAATTACTGCTTTCTACGGTGATTTCCTCCTGGTCAAG  495

seq1  GGACTCCTAGAAAGCAACTCTTTGTTCTGATGACTACCCTAGATACACTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTAGAAAGCAACTCTTTGTTCTGATGACTACCCTAGATACACTG  545

seq1  AAAAACAGCTTTCCACTGTTGACCCTAGGTACAGTGATTCCACTAGAACC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGCTTTCCACTGTTGACCCTAGGTACAGTGATTCCACTAGAACC  595

seq1  CCACTACCTTCACGCACTGAGCACATCTGCCTTAGAGCGCGTCTTCACCG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACCTTCACGCACTGAGCACATCTGCCTTAGAGCGCGTCTTCACCG  645

seq1  CAGTTCCCTGTGGGCTTTCCTTACTGTGGTTTATTTTGAGGGTCTGAGAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCTGTGGGCTTTCCTTACTGTGGTTTATTTTGAGGGTCTGAGAC  695

seq1  CTAACTATGCCAGCAGGTGCTGTCACTGAGTGACACCTCAGCCTGCTGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATGCCAGCAGGTGCTGTCACTGAGTGACACCTCAGCCTGCTGTC  745

seq1  TGTAGTTTGGATTTCGTGATTCCACCTCTTGGAAGCAGAGAATTTGCTAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTGGATTTCGTGATTCCACCTCTTGGAAGCAGAGAATTTGCTAA  795

seq1  ACTTTTAAATAGTTGTGAATTCAGCATCCAGCCCGTAGAGGAGGCCTGGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAATAGTTGTGAATTCAGCATCCAGCCCGTAGAGGAGGCCTGGG  845

seq1  GAAAGCTGTAGACTGATGCTGATCCTGGCCAGCTTCTGCTCCCTGCACCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTAGACTGATGCTGATCCTGGCCAGCTTCTGCTCCCTGCACCC  895

seq1  GACACCCTCTCCCTGCCAGAGATCTTAGACATAACTGAACCTGGGATGGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTCTCCCTGCCAGAGATCTTAGACATAACTGAACCTGGGATGGG  945

seq1  GTCAGTATAGAGATTTCAAAATACAAGACTGCAAAGCCAGGCCTGTGTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATAGAGATTTCAAAATACAAGACTGCAAAGCCAGGCCTGTGTCA  995

seq1  CACACCTGTGATCCAGCACTTTGGAAGGCTGAGGCAGGAAGCTCACTAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGATCCAGCACTTTGGAAGGCTGAGGCAGGAAGCTCACTAAG  1045

seq1  TTAAAGGCAAATATGGGCTACAGAGCAAGACTGTTTCAAAACAACAACAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCAAATATGGGCTACAGAGCAAGACTGTTTCAAAACAACAACAA  1095

seq1  CAAAAACCCCACCAGACTTAATAGATAAAATATGCATGCTGTATAGCCAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCCCACCAGACTTAATAGATAAAATATGCATGCTGTATAGCCAC  1145

seq1  GAGGACCTGAATTC  1156
      ||||||||||||||
seq2  GAGGACCTGAATTC  1159