BAC Information

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BAC

Clone NameB6Ng01-188E02
Chromosome4 (Build37)
Map Location 154,669,486 - 154,798,574
singlet/doubletdoublet
Overlap genePrkcz, Gabrd, 2010015L04Rik
Upstream geneArhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik
Downstream geneTmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E02.bB6Ng01-188E02.g
ACCGA012600GA012601
length1,1441,032
definitionB6Ng01-188E02.b B6Ng01-188E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,669,486 - 154,670,632)(154,797,554 - 154,798,574)
sequence
gaattctgggacttgactctgcgagagcaaccactctgcatattgagaga
tatctccagggatagactgagctctatcagcagcctctcgaatcttttgg
gggaaaggtcttgatatatagcccaggcttgtcttagcctcagtgctgtg
cttacaggtctgtcaggagagtcactcttaccaggggccaggaaagagga
actgctgaccaaagatagcatggacttaccaatatggactggactgagac
ctcatgcgtatgtttcttaggggagctaccaaaactgtaccaatagctct
ccctccccttatcttattttttctgagacagggtctttctatgtagcctt
gctggcttggaatttgctacgttgaacaggctggccacaaaaaaaaatcg
cagagagctgccaggctcttgtcttcagagtgctgggattaaaggtgtgc
accaccatgcctggctggtggctatttaagatctatacttgaatcattaa
catttcagaaaacgtgccattaaaacaacaacaacaaaaaaaagcaaaac
caagccccaggtctctattctccagaactcacaggaaatagattaatggt
ataaaaagcattttaaagtctgtctctcacgctgccaatttgtttcttgc
tctcatttttcaatcatgtattttaatttttttcaaacatatcaagcgct
catcttgtattcagtcaggctgagccttctgtctcagtttctgctggctc
tcgaccagagtgcttagtttcctactatggtttttttttagttgctgatt
gtgagcccagatgtccgattcactatctgtgagaatccttccaggctgcc
ttcaagaggggtggctcttgcttctgtcagccacctggggggcactgctt
ggctagacctcttaggggtataatccctggctctaggtatgtgtgaggtc
cagtgtgaggttttgagttcttcacaaaagactattcttgttccccttgc
cttgctctacctggggtagtgtggggctcatgggaagacccaaccttatt
tctcttcaggactcattactggagcaaacacattcagctccttagtgaag
gttacacaacacagcgaaagcttaaccctaggtcattaccaccc
gaattctgtgcagtggtgtgcatgttgaccctgtgcagctgtgtgcatgt
tgaccctgtgcagtggtgagcatattgactttgcagtggtgtgcatgttg
gccctctcctattggttaccgtgccctgagtcttcatgatgtggcccact
cttccctaacccagttctgagccctcgagctggccctcacactgcattgg
gccctgtgaccactgttgcactgagatgaggccctctcagaacagtgcta
aattgttctctttctgctggatcatggttcctgtctgcagtccagctagg
aagcctgtggtagaggcgtggtaaaccgtcaggctgagcaggctggcagg
ctcatggccagagcccaaggatagaagaattctggctcccaagagcaaga
cccaggggggtaggtagccagttggttagatatactggagaggctggtcc
tacccgactggcagtgatgttgttcttcagggacagcacggcatccatgc
gccgttgcatgtgcgtgcgcgactccatctcttccttctgctctcgctca
cgaactctgcagtaatgtgcattttgtttattttttacttttgtttgtct
cttttgtgtccaggtttctctatggatccccagctgttctggaacttgct
atgtagactaggctggtcccaaactcagagatcaacctgcctgtctcctg
agtgctggaattgaagggtgtgccactgtgcccggtgaaacgtgcacttt
tcactagggatgtgtgcaggcactgccggcgattacagagctataggagc
cttaggtgctgatcacctctataaatgctgacaatgtgaggggtgcatgg
ggtaggctctctgtcagggctgtgcccatgagacccgtagctgggatgtt
ccctacactctagggcttcattgtgtctcatgcttcttctgcaaatacaa
atagcttcttaaaataaaactgcagaatatattgtttctgataatagtta
tgaccttaattagaaagaatctcaagtggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154669486_154670632
seq2: B6Ng01-188E02.b_46_1189

seq1  GAATTCTGGGACTTGACTCTGCGAGAGCAACCACTCTGCATATTGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACTTGACTCTGCGAGAGCAACCACTCTGCATATTGAGAGA  50

seq1  TATCTCCAGGGATAGACTGAGCTCTATCAGCAGCCTCTCGAATCTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAGGGATAGACTGAGCTCTATCAGCAGCCTCTCGAATCTTTTGG  100

seq1  GGGAAAGGTCTTGATATATAGCCCAGGCTTGTCTTAGCCTCAGTGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGTCTTGATATATAGCCCAGGCTTGTCTTAGCCTCAGTGCTGTG  150

seq1  CTTACAGGTCTGTCAGGAGAGTCACTCTTACCAGGGGCCAGGAAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGTCTGTCAGGAGAGTCACTCTTACCAGGGGCCAGGAAAGAGGA  200

seq1  ACTGCTGACCAAAGATAGCATGGACTTACCAATATGGACTGGACTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGACCAAAGATAGCATGGACTTACCAATATGGACTGGACTGAGAC  250

seq1  CTCATGCGTATGTTTCTTAGGGGAGCTACCAAAACTGTACCAATAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCGTATGTTTCTTAGGGGAGCTACCAAAACTGTACCAATAGCTCT  300

seq1  CCCTCCCCTTATCTTATTTTTTCTGAGACAGGGTCTTTCTATGTAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTTATCTTATTTTTTCTGAGACAGGGTCTTTCTATGTAGCCTT  350

seq1  GCTGGCTTGGAATTTGCTACGTTGAACAGGCTGGCCACAAAAAAAAATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTGGAATTTGCTACGTTGAACAGGCTGGCCACAAAAAAAAATCG  400

seq1  CAGAGAGCTGCCAGGCTCTTGTCTTCAGAGTGCTGGGATTAAAGGTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTGCCAGGCTCTTGTCTTCAGAGTGCTGGGATTAAAGGTGTGC  450

seq1  ACCACCATGCCTGGCTGGTGGCTATTTAAGATCTATACTTGAATCATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGCCTGGCTGGTGGCTATTTAAGATCTATACTTGAATCATTAA  500

seq1  CATTTCAGAAAACGTGCCATTAAAACAACAACAACAAAAAAAAGCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAAAACGTGCCATTAAAACAACAACAACAAAAAAAAGCAAAAC  550

seq1  CAAGCCCCAGGTCTCTATTCTCCAGAACTCACAGGAAATAGATTAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCAGGTCTCTATTCTCCAGAACTCACAGGAAATAGATTAATGGT  600

seq1  ATAAAAAGCATTTTAAAGTCTGTCTCTCACGCTGCCAATTTGTTTCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCATTTTAAAGTCTGTCTCTCACGCTGCCAATTTGTTTCTTGC  650

seq1  TCTCATTTTTCAATCATGTATTTTAATTTTTTTCAAACATATCAAGCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTTCAATCATGTATTTTAATTTTTTTCAAACATATCAAGCGCT  700

seq1  CATCTTGTATTCAGTCAGGCTGAGCCTTCTGTCTCAGTTTCTGCTGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTATTCAGTCAGGCTGAGCCTTCTGTCTCAGTTTCTGCTGGCTC  750

seq1  TCGACCAGAGTGCTTAGTTTCCTACTATGG-TTTTTTTTAGTTGCTGATT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCGACCAGAGTGCTTAGTTTCCTACTATGGTTTTTTTTTAGTTGCTGATT  800

seq1  GTGAGCCCAGATGTCCGATTCACTATCTGTGAGAATCCTTCCAGGCTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCCAGATGTCCGATTCACTATCTGTGAGAATCCTTCCAGGCTGCC  850

seq1  TTCAAGAGGGGTGGCTCTTGCTTCTGTCAGCCACCT-GGGGGCACTGCTT  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCAAGAGGGGTGGCTCTTGCTTCTGTCAGCCACCTGGGGGGCACTGCTT  900

seq1  GGCTAGACCCTCTTAGGGGTATAAT-CCTGGCTCTAGGTATGTGTGAGGT  947
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTAGA-CCTCTTAGGGGTATAATCCCTGGCTCTAGGTATGTGTGAGGT  949

seq1  CCAGTGTGAGGTTTTGAGTTC-TCAC-AAAGACTATTCCTTGTTCCCC-T  994
      ||||||||||||||||||||| |||| |||||||||| |||||||||| |
seq2  CCAGTGTGAGGTTTTGAGTTCTTCACAAAAGACTATT-CTTGTTCCCCTT  998

seq1  GCCTTGCTCTACCT-GGGTAGTGTGGGGCTCATGGGAAGACCCAAACCTA  1043
      |||||||||||||| |||||||||||||||||||||||||||||| | ||
seq2  GCCTTGCTCTACCTGGGGTAGTGTGGGGCTCATGGGAAGACCCAACCTTA  1048

seq1  TTTCTCTCAGGGCCTCAATTACTGGAGCAAACACCAATTCCAAGCT-CTT  1092
      |||||||   || ||| |||||||||||||||||  ||||  |||| |||
seq2  TTTCTCTTCAGGACTC-ATTACTGGAGCAAACAC--ATTC--AGCTCCTT  1093

seq1  AGTGAAAGGGTACACAAACCACAGCAGAAGGTTAACCCTAGTTCATTACC  1142
      |||| |||| |||||||  ||||||  ||| |||||||||| |||||| |
seq2  AGTG-AAGGTTACACAA--CACAGCGAAAGCTTAACCCTAGGTCATTA-C  1139

seq1  CACCC  1147
      |||||
seq2  CACCC  1144

seq1: chr4_154797554_154798574
seq2: B6Ng01-188E02.g_66_1090 (reverse)

seq1  TTGAGAT--CTTCTAATTAA-GTCATTAACTAATTATCAGAAACAAATAT  47
      |||||||   |||||||||| |||| ||||| |||||||||||| |||||
seq2  TTGAGATTCTTTCTAATTAAGGTCA-TAACT-ATTATCAGAAAC-AATAT  47

seq1  A-TCTGCAGTTTTATTTTAAGAAGCTATTTGTATTTGCAAGAGGAGCATG  96
      | |||||||||||||||||||||||||||||||||||||  || ||||||
seq2  ATTCTGCAGTTTTATTTTAAGAAGCTATTTGTATTTGCAGAAGAAGCATG  97

seq1  AGACACAATGAAGCCCTAGAGTGTAGGGAACATCCCAGCTACGGGTCTCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAATGAAGCCCTAGAGTGTAGGGAACATCCCAGCTACGGGTCTCA  147

seq1  TGGGCACAGCCCTGACAGAGAGCCTA-CCCATGCA-CCCTCACATTGTCA  194
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TGGGCACAGCCCTGACAGAGAGCCTACCCCATGCACCCCTCACATTGTCA  197

seq1  GCATTTATAGAGGTGATCAGCACCTAAGGCTCCTATAGCTCTGTAATCGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATAGAGGTGATCAGCACCTAAGGCTCCTATAGCTCTGTAATCGC  247

seq1  CGGCAGTGCCTGCACACATCCCTAGTG-AAAGTGCACGTTTCACCGGGCA  293
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGGCAGTGCCTGCACACATCCCTAGTGAAAAGTGCACGTTTCACCGGGCA  297

seq1  CAGTGGCACACCCTTCAATTCCAGCACTCAGGAGACAGGCAGGTTGATCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCACACCCTTCAATTCCAGCACTCAGGAGACAGGCAGGTTGATCT  347

seq1  CTGAGTTTGGGACCAGCCTAGTCTACATAGCAAGTTCCAGAACAGCTGGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGGGACCAGCCTAGTCTACATAGCAAGTTCCAGAACAGCTGGG  397

seq1  GATCCATAGAGAAACCTGGACACAAAAGAGACAAACAAAAGTAAAAAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATAGAGAAACCTGGACACAAAAGAGACAAACAAAAGTAAAAAATA  447

seq1  AACAAAATGCACATTACTGCAGAGTTCGTGAGCGAGAGCAGAAGGAAGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGCACATTACTGCAGAGTTCGTGAGCGAGAGCAGAAGGAAGAG  497

seq1  ATGGAGTCGCGCACGCACATGCAACGGCGCATGGATGCCGTGCTGTCCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTCGCGCACGCACATGCAACGGCGCATGGATGCCGTGCTGTCCCT  547

seq1  GAAGAACAACATCACTGCCAGTCGGGTAGGACCAGCCTCTCCAGTATATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAACATCACTGCCAGTCGGGTAGGACCAGCCTCTCCAGTATATC  597

seq1  TAACCAACTGGCTACCTACCCCCCTGGGTCTTGCTCTTGGGAGCCAGAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACTGGCTACCTACCCCCCTGGGTCTTGCTCTTGGGAGCCAGAAT  647

seq1  TCTTCTATCCTTGGGCTCTGGCCATGAGCCTGCCAGCCTGCTCAGCCTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATCCTTGGGCTCTGGCCATGAGCCTGCCAGCCTGCTCAGCCTGA  697

seq1  CGGTTTACCACGCCTCTACCACAGGCTTCCTAGCTGGACTGCAGACAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTACCACGCCTCTACCACAGGCTTCCTAGCTGGACTGCAGACAGGA  747

seq1  ACCATGATCCAGCAGAAAGAGAACAATTTAGCACTGTTCTGAGAGGGCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATCCAGCAGAAAGAGAACAATTTAGCACTGTTCTGAGAGGGCCT  797

seq1  CATCTCAGTGCAACAGTGGTCACAGGGCCCAATGCAGTGTGAGGGCCAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGCAACAGTGGTCACAGGGCCCAATGCAGTGTGAGGGCCAGC  847

seq1  TCGAGGGCTCAGAACTGGGTTAGGGAAGAGTGGGCCACATCATGAAGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGGCTCAGAACTGGGTTAGGGAAGAGTGGGCCACATCATGAAGACT  897

seq1  CAGGGCACGGTAACCAATAGGAGAGGGCCAACATGCACACCACTGCAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACGGTAACCAATAGGAGAGGGCCAACATGCACACCACTGCAAAG  947

seq1  TCAATATGCTCACCACTGCACAGGGTCAACATGCACACAGCTGCACAGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGCTCACCACTGCACAGGGTCAACATGCACACAGCTGCACAGGG  997

seq1  TCAACATGCACACCACTGCACAGAATTC  1021
      ||||||||||||||||||||||||||||
seq2  TCAACATGCACACCACTGCACAGAATTC  1025