BAC Information

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BAC

Clone NameB6Ng01-189H06
Chromosome4 (Build37)
Map Location 146,521,119 - 146,660,313
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H06.bB6Ng01-189H06.g
ACCGA013471GA013472
length1,1641,048
definitionB6Ng01-189H06.b B6Ng01-189H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,521,119 - 146,522,259)(146,659,269 - 146,660,313)
sequence
gaattcaactttggactcacacttaattaaatgctctgaggaaaaggctt
ttatttctttccttaactcaactcagatgcattattaaccaccagtatgt
ttaatctactcacatatgaagaatcaattaacttgtgacctttttttttt
ttttttttttttttgcataagtacaatatgggaaaaactaaaagtcacca
caatgggaaactagtagccctgccatctgaaaggtgttcatgggctttga
accctgttctttaaagtcagacccccaggtttgggcttgtgcttctgagc
tctcgcctccatgctgagctagaatccattttaacctctcataatcatca
caacaggttttgaacctaagaggtcacatgagaatcctggaactcattac
aatcatgaaaagagttgacttcctagcaatagtctaatgagacttgggta
aatctcgagtcttctttccccagcttatactgatatgcatgggtgtcata
gagtgtttcagtgaacaatcaggaaactatttatcaacaaacagtgcagt
gtgtattgtaattttgttctagtttttctttctttccttcttactttttt
ttcttcttcttctttttttttttcacttttttgacaaaaatctagacagt
tttccaaaggagtttctcttaattgcctcacccttcaagcagtaaataat
attgtgccttgacttaatatcattttaattcaccattttctttgactgag
gtacccacctcctctaccttttctttaagtctgataatctgtctcccaca
gtttctctatgtttttgttttttgttttttttaacctcactacattttcc
ttttcaggggtttttttggttgtttttttgtttttgggtttggttttggt
ttttggcattcctgaagcacctattggaactccaatttaatatttttata
gggtcctcaaggccatctggtattaatttttcttggtcatgggttcaatt
tggtcctgtcctggagtgggattcacaatggttacaaaccttaatgtccc
tgaagttgggttttctattcctttatcctggaattccacataaatgtgtg
cctccttatataggaatcttcttatggttgcagtttggagcctaggaacc
ttttatcaatagtt
gaattcccaggactcacatggtggatcagaactgaaactccaattccagg
aagtacaatgtcctcttctgacctctgtgggcaccaggcatgtatgtgat
ggagcacagatacacatgtaggcgaaaacacccttatacaaaaaaataat
atgttttcaataaaataagaaaaatgtttaaaaggaaagtagtaactcag
gctgggaatgtgctagcctggtaccacaaaccttgcattcagagctcaga
cccatgtcacatgttgagatggtacacgcttttagtcccctcagaatttg
tgaggtggaagccgaaggattaaagagtcaggcacatcctctgtgacata
gtcagtttgaggaagaccagcctgagctacatgagaccctctcttgaaac
acaaaggaagcaaagaatgactgtggtccaggattctggggtcactgccc
ccagctttgatttacaaaccaccagttgtgtacagtatgcagtgatcaga
acccacctcacagctaatactgcatttgctccttagcatcaagaagaaag
gccaggcacttttccaaatgctttagaaataaaaagttgtatttaattct
ccaccacttgaagcaaggatgctttttgccagccacattttaaagagaag
aactaggatctggatagatggcttggtggttaagagcactggctgctctt
cagggaaccaaaggtcgttctcaggtacacacatagtggctcatgaccat
caactatgactgcagttcctagggaactgatgctctctttcagcctctgt
gagtcccaggcacgcatatggtacactgacttatatgcaaagaaacatta
cacataaataaaaacgaagtatttttgtttttgtttttgagacatgattt
ctctgtgtagtcctgactgtccaggaattcaccctgtataccaggctggc
cttgatctcaagctgcacccctccacctgagcactgggattaaaggacgt
acaccacaaggtcagctttaccccctcagtttcatcattcttgtaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146521119_146522259
seq2: B6Ng01-189H06.b_47_1210

seq1  GAATTCAACTTTGGACTCACACTTAATTAAATGCTCTGAGGAAAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTGGACTCACACTTAATTAAATGCTCTGAGGAAAAGGCTT  50

seq1  TTATTTCTTTCCTTAACTCAACTCAGATGCATTATTAACCACCAGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTTCCTTAACTCAACTCAGATGCATTATTAACCACCAGTATGT  100

seq1  TTAATCTACTCACATATGAAGAATCAATTAACTTGTGACCTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTACTCACATATGAAGAATCAATTAACTTGTGACCTTTTTTTTTT  150

seq1  TTTTTTTTTTTTTTGCATAAGTACAATATGGGAAAAACTAAAAGTCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGCATAAGTACAATATGGGAAAAACTAAAAGTCACCA  200

seq1  CAATGGGAAACTAGTAGCCCTGCCATCTGAAAGGTGTTCATGGGCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAAACTAGTAGCCCTGCCATCTGAAAGGTGTTCATGGGCTTTGA  250

seq1  ACCCTGTTCTTTAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTCTTTAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGC  300

seq1  TCTCGCCTCCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCTCCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCA  350

seq1  CAACAGGTTTTGAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTTTTGAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTAC  400

seq1  AATCATGAAAAGAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAAAAGAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGTA  450

seq1  AATCTCGAGTCTTCTTTCCCCAGCTTATACTGATATGCATGGGTGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCGAGTCTTCTTTCCCCAGCTTATACTGATATGCATGGGTGTCATA  500

seq1  GAGTGTTTCAGTGAACAATCAGGAAACTATTTATCAACAAACAGTGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTCAGTGAACAATCAGGAAACTATTTATCAACAAACAGTGCAGT  550

seq1  GTGTATTGTAATTTTGTTCTAGTTTTTCTTTCTTTCCTTCTTACTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGTAATTTTGTTCTAGTTTTTCTTTCTTTCCTTCTTACTTTTTT  600

seq1  TTCTTCTTCTTCTTTTTTTTTTTCACTTTTTTGACAAAAATCTAGACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTTTTTTTTTTCACTTTTTTGACAAAAATCTAGACAGT  650

seq1  TTTCCAAAGGAGTTTCTCTTAATTGCCTCACCCTTCAAGCAGTAAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGGAGTTTCTCTTAATTGCCTCACCCTTCAAGCAGTAAATAAT  700

seq1  ATTGTGCCTTGACTTAATATCATTTTAATTCACCATTTTCTTTGACTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCTTGACTTAATATCATTTTAATTCACCATTTTCTTTGACTGAG  750

seq1  GTACCCACCTCCTCTACCTTTTCTTTAAGTCTGATAATCTGTCTCCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACCTCCTCTACCTTTTCTTTAAGTCTGATAATCTGTCTCCCACA  800

seq1  GTTTCTCTATGTTTTTG-TTTTTGTTTTTTTTAACCTCACTACATTTT-C  848
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GTTTCTCTATGTTTTTGTTTTTTGTTTTTTTTAACCTCACTACATTTTCC  850

seq1  TTTTCAGGTGTTTTTTTGTTTGTTTTTTTGTTTTTTGGTTTTGTTTTGTT  898
      |||||||| ||||||||| |||||||||||||||| ||||| |||||| |
seq2  TTTTCAGGGGTTTTTTTGGTTGTTTTTTTGTTTTTGGGTTTGGTTTTGGT  900

seq1  TTTTGGCATTCCTG-AGCACCTATT-GAACTCAATTTTAATA-TTTTATA  945
      |||||||||||||| |||||||||| |||||| | ||||||| |||||||
seq2  TTTTGGCATTCCTGAAGCACCTATTGGAACTCCAATTTAATATTTTTATA  950

seq1  GTGTCCTCA--GGCATCTGGTATTA--TTTTCTTGTTCAT-GGTTCATTT  990
      | |||||||  | ||||||||||||  |||||||| |||| |||||| ||
seq2  GGGTCCTCAAGGCCATCTGGTATTAATTTTTCTTGGTCATGGGTTCAATT  1000

seq1  TGTTCCTGTC--TGAGT-GGATTCACATGGTTTACAAACTTTAATGTCCC  1037
      || |||||||   |||| |||||||||  | |||||||| ||||||||||
seq2  TGGTCCTGTCCTGGAGTGGGATTCACAATGGTTACAAACCTTAATGTCCC  1050

seq1  TGATG-TGTGTTTTCTATT-CTTTATCTTGG-ATATCACATAAAT-TGTG  1083
      ||| | || |||||||||| ||||||| ||| ||  ||||||||| ||||
seq2  TGAAGTTGGGTTTTCTATTCCTTTATCCTGGAATTCCACATAAATGTGTG  1100

seq1  -CTCCT--TATAGGATACTTC-TATGGTTTGCAGTTT-GAGCCGAGG-AC  1127
       |||||  |||||||  |||| ||||| ||||||||| ||||| ||| ||
seq2  CCTCCTTATATAGGAATCTTCTTATGG-TTGCAGTTTGGAGCCTAGGAAC  1149

seq1  ATTTTATC-ATAGTT  1141
       ||||||| ||||||
seq2  CTTTTATCAATAGTT  1164

seq1: chr4_146659269_146660313
seq2: B6Ng01-189H06.g_64_1111 (reverse)

seq1  GTTTACA--GATGATGAAACTGA-GGGGTAAAGCTGACCTTGGTGGTGTA  47
      |||||||   ||||||||||||| ||||||||||||||||| ||||||||
seq2  GTTTACAAGAATGATGAAACTGAGGGGGTAAAGCTGACCTT-GTGGTGTA  49

seq1  CGT-CTTTAATCCCAGTGCTCAGGTGGA-GGGTGCAGCTTTGAGTTCAAG  95
      ||| |||||||||||||||||||||||| ||||||||| ||||| |||||
seq2  CGTCCTTTAATCCCAGTGCTCAGGTGGAGGGGTGCAGC-TTGAGATCAAG  98

seq1  GCCAGCCTGGTATACAGGGTGAATTCCTGGACAGTCAGGACTACACAGAG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTATACAGGGTGAATTCCTGGACAGTCAGGACTACACAGAG  148

seq1  AAATCATGTCTCAAAAAACAAAACAAAAATACTTCGTTTTTATTTATGTG  195
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  AAATCATGTCTCAAAAACAAAAACAAAAATACTTCGTTTTTATTTATGTG  198

seq1  TAATGTTTCTTTGCATATAAGTCAGTGTACCATATGCGTGCCTGGGACTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTCTTTGCATATAAGTCAGTGTACCATATGCGTGCCTGGGACTC  248

seq1  ACAGAGGCTGAAAGAGAGCATCAGTTCCCTAGGAACTGCAGTCATAGTTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCTGAAAGAGAGCATCAGTTCCCTAGGAACTGCAGTCATAGTTG  298

seq1  ATGGTCATGAGCCACTATGTGTGTACCTGAGAACGACCTTTGGTTCCCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATGAGCCACTATGTGTGTACCTGAGAACGACCTTTGGTTCCCTG  348

seq1  AAGAGCAGCCAGTGCTCTTAACCACCAAGCCATCTATCCAGATCCTAGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCCAGTGCTCTTAACCACCAAGCCATCTATCCAGATCCTAGTT  398

seq1  CTTCTCTTTAAAATGTGGCTGGCAAAAAGCATCCTTGCTTCAAGTGGTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTAAAATGTGGCTGGCAAAAAGCATCCTTGCTTCAAGTGGTGG  448

seq1  AGAATTAAATACAACTTTTTATTTCTAAAGCATTTGGAAAAGTGCCTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAATACAACTTTTTATTTCTAAAGCATTTGGAAAAGTGCCTGGC  498

seq1  CTTTCTTCTTGATGCTAAGGAGCAAATGCAGTATTAGCTGTGAGGTGGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTGATGCTAAGGAGCAAATGCAGTATTAGCTGTGAGGTGGGT  548

seq1  TCTGATCACTGCATACTGTACACAACTGGTGGTTTGTAAATCAAAGCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCACTGCATACTGTACACAACTGGTGGTTTGTAAATCAAAGCTGG  598

seq1  GGGCAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCTTCCTTTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCTTCCTTTGT  648

seq1  GTTTCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCTCAAACTGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCTCAAACTGAC  698

seq1  TATGTCACAGAGGATGTGCCTGACTCTTTAATCCTTCGGCTTCCACCTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACAGAGGATGTGCCTGACTCTTTAATCCTTCGGCTTCCACCTCA  748

seq1  CAAATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGTGACATGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGTGACATGGG  798

seq1  TCTGAGCTCTGAATGCAAGGTTTGTGGTACCAGGCTAGCACATTCCCAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTCTGAATGCAAGGTTTGTGGTACCAGGCTAGCACATTCCCAGC  848

seq1  CTGAGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATTGAAAACAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATTGAAAACAT  898

seq1  ATTATTTTTTTGTATAAGGGTGTTTTCGCCTACATGTGTATCTGTGCTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTGTATAAGGGTGTTTTCGCCTACATGTGTATCTGTGCTCC  948

seq1  ATCACATACATGCCTGGTGCCCACAGAGGTCAGAAGAGGACATTGTACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATACATGCCTGGTGCCCACAGAGGTCAGAAGAGGACATTGTACTT  998

seq1  CCTGGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCTGGGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCTGGGAATTC  1048