BAC Information

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BAC

Clone NameB6Ng01-189H11
Chromosome4 (Build37)4 (Build37)
Map Location 147,059,940 - 147,060,527146,576,011 - 146,577,075
singlet/doubletsingletsinglet
Overlap geneLOC100043100
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H11.bB6Ng01-189H11.g
ACCGA013481GA013482
length5671,067
definitionB6Ng01-189H11.b B6Ng01-189H11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,059,940 - 147,060,527)(146,576,011 - 146,577,075)
sequence
acaactaaagacaccccaatggctgaaaaccaacttaaagaaatgttcaa
agtccttagtgataagacaaatgcaaatcacaatgacaccttacagcaaa
cagaatagctaagatcaaaacctcaggtgacaacacatgttggagaggat
gcggagaaagaggaacactcctccattgctggtgggattgcaaacctcta
caaccactctggaaatcaatgtggagtttcctcagaaaattggaaataaa
tagatctgaagtccccgcaataccattcttgggaatatacccaatatctc
caaagacacatacaaataaataagtataaaacaaaacaaaacaaaacaaa
aacaagggtgtttctctaaaaaaaaaggcaatctcttaagaaagacatta
tactataaaatcttcagggatgtaaaactaactaaaccccaggctcatga
aactaaatagatattagtaaactttgatcttacccctctttagcaggctt
ttagcagtttcagtcttcagttctgtaaaactaggacttccctaaatata
tgtgtgtgtgtgtgtgt
gaattccatcggctgaaagaaagaatttgacatatgcttcctataccaga
atacctatggtggccatactgtaagtttcaaccatctttaaggcatttca
aatataagtgaacctataaaatcccaagacaaactgaatcttggtccatc
aaatggctctgcaatcctgagatatcgccaccagggggcagcaggtgctc
gggttgacatgcgtgaaattatgttttgattaaaaattaacctctagccc
accccgtggctactaaaggtatatcagcagcccgcattgagatgctcggg
gtggaaaagtacctgcgactgtgttctatgtcacatgcccacagtcttct
gcaaattcagggaagcttccagactcccaacttccaccactctgcttggt
aaaagatccccccaaaaaatcatccaaatttgccatggatctgggtttta
acacacagataagtctgtctaaacacacttgaaggccgctcaagggaaat
gaatggcttatttccctctccagtggcatgagtgacaccaggggtgaggt
gaacaacatctagacagccgagatcgagtaaagacaccctcccacccatg
tatgacttagtggaccagggagtctgtggagttactcatgggagcacagt
gactcgaaagcagcttcagcatagaaaactgttgggagccgcccccacat
tcgccgtcacaagatggcgctgacatcctgtgttctaagtggtaaacaaa
taatctgcgcatgtgccaagggtattttacgactacttgtactctgcctt
tcctgtgaacgtcagctcggccatgggctgcagccaatcaggagtgatgc
gtcctaggcgaaatataactctcctaattagggaaggggtttcgattcat
gattgaaggggctttcgcttttggggctgggggtttgccgctcctagctc
ctgaagaattgtagcaataaagttttgccgcagaagattctggtcttgtt
gcgtctttcctgaaggtcgcggcgtacggcgtattacattggtgctgaat
tccgggaccgagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147059940_147060527
seq2: B6Ng01-189H11.b_43_615

seq1  GAATTCACAACTAAAGACACCCCAATGGCTGAAAACCAACTTAAAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTAAAGACACCCCAATGGCTGAAAACCAACTTAAAGAAAT  50

seq1  GTTCAAAGTCCTTAGTGATAAGACAAATGCAAATCACAATGACACCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTCCTTAGTGATAAGACAAATGCAAATCACAATGACACCTTAC  100

seq1  AGCAAACAGAATAGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGAATAGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGA  150

seq1  GAGGATGCGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGCGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAA  200

seq1  CCTCTACAACCACTCTGGAAATCAATGTGGAGTTTCCTCAGAAAATTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAACCACTCTGGAAATCAATGTGGAGTTTCCTCAGAAAATTGGA  250

seq1  AATAAATAGATCTGAAGTCCCCGCAATACCATTCTTGGGAATATACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGATCTGAAGTCCCCGCAATACCATTCTTGGGAATATACCCAA  300

seq1  TATCTCCAAAGACACATACAAATAAATAAGTATAATAAAAAACAAAACAA  350
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TATCTCCAAAGACACATACAAATAAATAAGTATAAAACAAAACAAAACAA  350

seq1  AACAAAAACAAGGGTGTTTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAG  400
      |||||||||||||||||||||||                 ||||||||||
seq2  AACAAAAACAAGGGTGTTTCTCT-----------------AAAAAAAAAG  383

seq1  GCAATCTCTTAAGAAAGACATTATACTATAAAATCTTCAGGGATGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCTTAAGAAAGACATTATACTATAAAATCTTCAGGGATGTAAAA  433

seq1  CTAACTAAACCCCAGGCTCATGAAACTAAATAGATATTAGTAAACTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAACCCCAGGCTCATGAAACTAAATAGATATTAGTAAACTTTGA  483

seq1  TCTTACCCCTCTTTAGCAGGCTTTTAGCAGTTTCAGTCTTCAGTTCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCCTCTTTAGCAGGCTTTTAGCAGTTTCAGTCTTCAGTTCTGTA  533

seq1  AAACTAGGACTTCCCTAAATATGTGTGTGTGTGTGTGT--  588
      |||||||||||||||||||||| |||||||||||||||  
seq2  AAACTAGGACTTCCCTAAATATATGTGTGTGTGTGTGTGT  573

seq1: chr4_146576011_146577075
seq2: B6Ng01-189H11.g_72_1138

seq1  GAATTCCATCGGCTGAAAGAAAGAATTTGACATATGCTTCCTATACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCGGCTGAAAGAAAGAATTTGACATATGCTTCCTATACCAGA  50

seq1  ATACCTATGGTGGCCATACTGTAAGTTTCAACCATCTTTAAGGCATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATGGTGGCCATACTGTAAGTTTCAACCATCTTTAAGGCATTTCA  100

seq1  AATATAAGTGAACCTATAAAATCCCAAGACAAACTGAATCTTGGTCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGTGAACCTATAAAATCCCAAGACAAACTGAATCTTGGTCCATC  150

seq1  AAATGGCTCTGCAATCCTGAGATATCGCCACCAGGGGGCAGCAGGTGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTCTGCAATCCTGAGATATCGCCACCAGGGGGCAGCAGGTGCTC  200

seq1  GGGTTGACATGCGTGAAATTATGTTTTGATTAAAAATTAACCTCTAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGACATGCGTGAAATTATGTTTTGATTAAAAATTAACCTCTAGCCC  250

seq1  ACCCCGTGGCTACTAAAGGTATATCAGCAGCCCGCATTGAGATGCTCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTGGCTACTAAAGGTATATCAGCAGCCCGCATTGAGATGCTCGGG  300

seq1  GTGGAAAAGTACCTGCGACTGTGTTCTATGTCACATGCCCACAGTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAGTACCTGCGACTGTGTTCTATGTCACATGCCCACAGTCTTCT  350

seq1  GCAAATTCAGGGAAGCTTCCAGACTCCCAACTTCCACCACTCTGCTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCAGGGAAGCTTCCAGACTCCCAACTTCCACCACTCTGCTTGGT  400

seq1  AAAAGATCCCCCCAAAAAATCATCCAAATTTGCCATGGATCTGGGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCCCCCCAAAAAATCATCCAAATTTGCCATGGATCTGGGTTTTA  450

seq1  ACACACAGATAAGTCTGTCTAAACACACTTGAAGGCCGCTCAAGGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGATAAGTCTGTCTAAACACACTTGAAGGCCGCTCAAGGGAAAT  500

seq1  GAATGGCTTATTTCCCTCTCCAGTGGCATGAGTGACACCAGGGGTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTATTTCCCTCTCCAGTGGCATGAGTGACACCAGGGGTGAGGT  550

seq1  GAACAACATCTAGACAGCCGAGATCGAGTAAAGACACCCTCCCACCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACATCTAGACAGCCGAGATCGAGTAAAGACACCCTCCCACCCATG  600

seq1  TATGACTTAGTGGACCAGGGAGTCTGTGGAGTTACTCATGGGAGCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTAGTGGACCAGGGAGTCTGTGGAGTTACTCATGGGAGCACAGT  650

seq1  GACTCGAAAGCAGCTTCAGCATAGAAAACTGTTGGGAGCCGCCCCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGAAAGCAGCTTCAGCATAGAAAACTGTTGGGAGCCGCCCCCACAT  700

seq1  TCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAA  750

seq1  TAATCTGCGCATGTGCCAAGGGTATTTTACGACTACTTGTACTCTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCGCATGTGCCAAGGGTATTTTACGACTACTTGTACTCTGCCTT  800

seq1  TCCTGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCTGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCA-GGAGTGATG  849

seq1  CGTCCTAGGCGAAATATAACTCTCCTAAATAGGGAAGGGGTTTCGATTTC  900
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CGTCCTAGGCGAAATATAACTCTCCTAATTAGGGAAGGGGTTTCGA-TTC  898

seq1  ATGATTGAAGGGGCTTTCGCTTTTGGGGCTGGGGGTTTG-CGCTCCTAGC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGATTGAAGGGGCTTTCGCTTTTGGGGCTGGGGGTTTGCCGCTCCTAGC  948

seq1  TCCTGAAGA--TGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTC-T  996
      |||||||||  ||| ||||||||||||||||||||||||||||||||| |
seq2  TCCTGAAGAATTGT-AGCAATAAAGTTTTGCCGCAGAAGATTCTGGTCTT  997

seq1  GTTGCGTCTTTCCTGGCCGGTCGC-GCGAAC-GCGTATAACAATTGGTGC  1044
      |||||||||||||| |  |||||| ||| || |||||| || ||||||||
seq2  GTTGCGTCTTTCCT-GAAGGTCGCGGCGTACGGCGTATTAC-ATTGGTGC  1045

seq1  TGAAATCCGGGA-CGAGAAAAA  1065
      |||| ||||||| |||||||||
seq2  TGAATTCCGGGACCGAGAAAAA  1067