BAC Information

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BAC

Clone NameB6Ng01-189N03
Chromosome4 (Build37)
Map Location 121,338,825 - 121,339,915
singlet/doubletsinglet
Overlap genenone
Upstream geneCited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
Downstream geneLOC666931, LOC666937, LOC633269, LOC633279
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189N03.b
ACCGA013740
length1,109
definitionB6Ng01-189N03.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttatcttcacaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctccacatctaatgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattatgttgatgggctatcattctttagaga
ttcagagaacctaacacaaccccccagcatctgtttggaatcagctccat
gtcctctctagaaccctctttattcagaccttccttccctctgaataagt
actttgtatctcatcatccttctaaagcctttgtgagacatatagtatca
gctgaacctaggtgccataaacctttaatccacttgggaggcagaacctg
gtatatctttggttttccaggcagcctggtagatctttgagttcctgggc
agagtaagttccaggaaagccagagctacacaaaaaaaaaacccttttct
gaaaacacaaaacagaaaaacagttgttctagaatctcattttgccatgg
atatgacctacttaacaatttcttttaaacatttatagtaaatgttttaa
aaacagaataaatatgagcaggtaactgagaaagttagtctaggatgaga
agaggcatttggtaacagaacacaatgtattaaagataggaagcctgagg
gacaggaaccactggctataaaccagattgcatcttgcataggaagtcat
gtttccacacctccaggcagcagggtaatctccccagtgagactccatca
aacccacttcttctgagtgtactctctgtctctgaccttcacagatgcct
taaactttctctcaactttctttccttgttcattctgcagcccagatgtg
cagggctgtctccctcttatagaccatttcactctatggctatcagctat
cattccaatcctttacccatctgacagcttgtcaagtacatggaaaccac
ctcaacaccttgtgtggaatctgcctccactttacactaggaattccctc
ctctgagcaccactgtttctaatcatgtgaatctcctacttgtcaccacc
atccctgcttctaaagccccttcttcaatcttttgtgaaaaaatctagac
tcacctagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121338825_121339915
seq2: B6Ng01-189N03.b_49_1157 (reverse)

seq1  CCTAGGTGAGACTAGA-TTTTTCACAAAGATTTTGAAGAAGGGGCTTTAG  49
      |||||||||| ||||| ||||||||||| |  ||||||||||||||||||
seq2  CCTAGGTGAGTCTAGATTTTTTCACAAA-AGATTGAAGAAGGGGCTTTAG  49

seq1  AAGCA-GGAT-GTGGTGCAAAGTA-GAGATTCACATGA-TAG-AACAGT-  93
      ||||| |||| ||||||  ||||| ||||||||||||| ||| |||||| 
seq2  AAGCAGGGATGGTGGTGACAAGTAGGAGATTCACATGATTAGAAACAGTG  99

seq1  GTGCTCAGA-GAGG--ATT-CTAGTGGTAAAGTGGA-GCAGATTCCACAC  138
      ||||||||| ||||  ||| ||||| |||||||||| |||||||||||||
seq2  GTGCTCAGAGGAGGGAATTCCTAGT-GTAAAGTGGAGGCAGATTCCACAC  148

seq1  -AGGTGTTGA-GTGG-TTCCATGTACTTGAC-AGCTGTCAGATGGGT-AA  183
       ||||||||| |||| ||||||||||||||| ||||||||||||||| ||
seq2  AAGGTGTTGAGGTGGTTTCCATGTACTTGACAAGCTGTCAGATGGGTAAA  198

seq1  GGATTGGAATGATAGCTGATAGCCATAGAGTG-AATGGTCTATAAGAGGG  232
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGATTGGAATGATAGCTGATAGCCATAGAGTGAAATGGTCTATAAGAGGG  248

seq1  AGACAG-CCTGCACATCTGGGCTGCAGAATGAACAAGGAAAGAAAGTTGA  281
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCCTGCACATCTGGGCTGCAGAATGAACAAGGAAAGAAAGTTGA  298

seq1  GAG-AAGTTTAAGGCATCTGTGAAGGTCAGAGACAGAGAGTACACTCAGA  330
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTTAAGGCATCTGTGAAGGTCAGAGACAGAGAGTACACTCAGA  348

seq1  AGAAGTGGGTTTGATGGAGTCTCACTGGGGAGATTACCCTGCTGCCTGGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGTTTGATGGAGTCTCACTGGGGAGATTACCCTGCTGCCTGGA  398

seq1  GGTGTGGAAACATGACTTCCTATGCAAGATGCAATCTGGTTTATAGCCAG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAAACATGACTTCCTATGCAAGATGCAATCTGGTTTATAGCCAG  448

seq1  TGGTTCCTGTCCCTCAGGCTTCCTATCTTTAATACATTGTGTTCTGTTAC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTGTCCCTCAGGCTTCCTATCTTTAATACATTGTGTTCTGTTAC  498

seq1  CAAATGCCTCTTCTCATCCTAGACTAACTTTCTCAGTTACCTGCTCATAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTCTTCTCATCCTAGACTAACTTTCTCAGTTACCTGCTCATAT  548

seq1  TTATTCTGTTTTTAAAACATTTACTATAAATGTTTAAAAGAAATTGTTAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGTTTTTAAAACATTTACTATAAATGTTTAAAAGAAATTGTTAA  598

seq1  GTAGGTCATATCCATGGCAAAATGAGATTCTAGAACAACTGTTTTTCTGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCATATCCATGGCAAAATGAGATTCTAGAACAACTGTTTTTCTGT  648

seq1  TTTGTGTTTTCAGAAAAGGGTTTTTTTTTTGTGTAGCTCTGGCTTTCCTG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTTCAGAAAAGGGTTTTTTTTTTGTGTAGCTCTGGCTTTCCTG  698

seq1  GAACTTACTCTGCCCAGGAACTCAAAGATCTACCAGGCTGCCTGGAAAAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACTCTGCCCAGGAACTCAAAGATCTACCAGGCTGCCTGGAAAAC  748

seq1  CAAAGATATACCAGGTTCTGCCTCCCAAGTGGATTAAAGGTTTATGGCAC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATACCAGGTTCTGCCTCCCAAGTGGATTAAAGGTTTATGGCAC  798

seq1  CTAGGTTCAGCTGATACTATATGTCTCACAAAGGCTTTAGAAGGATGATG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCAGCTGATACTATATGTCTCACAAAGGCTTTAGAAGGATGATG  848

seq1  AGATACAAAGTACTTATTCAGAGGGAAGGAAGGTCTGAATAAAGAGGGTT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAAAGTACTTATTCAGAGGGAAGGAAGGTCTGAATAAAGAGGGTT  898

seq1  CTAGAGAGGACATGGAGCTGATTCCAAACAGATGCTGGGGGGTTGTGTTA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGGACATGGAGCTGATTCCAAACAGATGCTGGGGGGTTGTGTTA  948

seq1  GGTTCTCTGAATCTCTAAAGAATGATAGCCCATCAACATAATCCAGTATA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTGAATCTCTAAAGAATGATAGCCCATCAACATAATCCAGTATA  998

seq1  TAAACAAACTCAAAGACAAAAACCACATGATCATCTCATTAGATGTGGAG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACTCAAAGACAAAAACCACATGATCATCTCATTAGATGTGGAG  1048

seq1  AAAGCATTTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGTGAAG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGTGAAG  1098

seq1  ATAAGGAATTC  1091
      |||||||||||
seq2  ATAAGGAATTC  1109