BAC Information

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BAC

Clone NameB6Ng01-189N10
Chromosome4 (Build37)
Map Location 110,588,528 - 110,762,886
singlet/doubletdoublet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189N10.bB6Ng01-189N10.g
ACCGA013753GA013754
length1,1051,072
definitionB6Ng01-189N10.b B6Ng01-189N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,761,784 - 110,762,886)(110,588,528 - 110,589,590)
sequence
gaattcagtcttttgttcttttccatgacttagtctctaggtcagcttct
aatattccatctctactgactagttttatgtgtacttgacataggctaga
gttacttgggaagagggaaccttaattgagatgaaataaacccttcccct
ccaagttgctttcggtcatggcatctgataatagcaatagaaactccagc
taagacactatgttattcagaagttcttgacatgctctggcgcctatgaa
cacagcatccaatgtcactgtaaatcttagcaagttatccatggcactgt
ctcttcaaggcagtggcaggtgcatttcaagagaatgagcataagtgtga
aaccctacaggagatgtggctgcaactgtagctcagccactggcctgctg
aagtctaacaagtcacttaactcgccagtcaaaagagtgggtacaggttt
gaacatgaacaccctaactctgctcagtgcctggcctgtacaggagaaga
gaagatgggtgataactgaacaaagaaaagagagatcacctggaaatcat
tctagagacagagataagcccataaaaccccaggggctgtactagaatgc
agaagcctcagatttgaaaatagatgttatccaaggaaaggaaggccagt
agggtaataccaaatatgttatcataagggggaaagtgtgtagagttggt
agtagattaggaaacatggaccttaagacatatgaaagcataggccatgg
caaagcttctagaacacaggctagaaatatactctaacctgtcactggct
taatgctctgagcatggttggaactaaagaggacatgctgcatttggtga
agctgggcctttgaagagttttagccctccccaggtaaagcctgggactg
agggcacactgcctttcttgcacagatggctttaggcatttgcagattaa
acagaagttcaaaaatctattttgataacctggcaatatgctacctaatg
tttttctgttgtgttctgtgacctttctgcctgtgtgtctgttttgctat
cgattttgatacagaatataatttccagcatgagtttgaaagcagctccc
tctgg

gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcatgagctctttgtatatcaggcacagattcttat
aagattcttaaaagatttgccttctcattttctcaggttccatattccca
gatggaagaaggaggtaagaaaggaaaagaggaatttaggggagattagg
cagccctggtgatcaagggccaaggaggcaatattagcacttgttgttca
ggaagtaagctgtagccctgatttagcatgactgctgctgctgaaagtcc
ctggagcctggccagcctgtatccttcctggggttcttattttcaaactg
tttgcaaatagaaggaatgttgccaattcactggggcatagaatccagca
gggatgatgatggtaataacactgaagtggctggtcaatgatgccatcag
gggacctgaaagaggtggtgtctgtttattttaataagaattcctgcccc
taaatgccttctcttcctgggctagcatctgttcctaggattaaaggaaa
gtctgcctgctcctttctagaactaaagacccttttgtttggcctgagca
aagtgaccctggtctacatgaacattttctgacctggccagaaagaggta
aagatggacaggaccctgaaaagaagcaacagacatgcgagcttagccag
agctgtgctttattcctcagagaggactagctcagggtgccaggttaggc
tggcaaattcaaaggcagacgttcctgcccacacagcagcctccaggccg
gaagttgggggtggatccagatgggaattcatatgtttgtgccatgtgtg
ttttcattggaggggaaaagaatctcatgggctggcaactttctgagggc
tctgtgcagtaactcacagtgtaaggaaggaaaggagctgctttggaaga
ttctatgtaagtgaatttttgggaagccttaaaagagcagagctctgggt
agaattctatgttgttatctcattgaattcagaacaaacggactctagac
tactcaaaaactcacctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110761784_110762886
seq2: B6Ng01-189N10.b_46_1150 (reverse)

seq1  CCAGAGGGAGCTGCCTTTCATACTCATGCTGGAAATTATATTCTGTAATT  50
      ||||||||||||| |||||| ||||||||||||||||||||||||| || 
seq2  CCAGAGGGAGCTG-CTTTCAAACTCATGCTGGAAATTATATTCTGT-ATC  48

seq1  AAAATCGATAGCAAAACAGACACACA-GCAGAAAGGTCACAGAACACAAC  99
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAATCGATAGCAAAACAGACACACAGGCAGAAAGGTCACAGAACACAAC  98

seq1  AGAAAAACATTAGGTAGCATATTGCCAGG-TATCAAAATAGATTTTTGAA  148
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAAAACATTAGGTAGCATATTGCCAGGTTATCAAAATAGATTTTTGAA  148

seq1  CTTCTGTTTAATCTGCAAATGCCTAAAGCCATCTGTGCAAGAAAGGCAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTAATCTGCAAATGCCTAAAGCCATCTGTGCAAGAAAGGCAGT  198

seq1  GTGCCCTCAGTCCCAGGC-TTACCTGGGGAGGGCTAAAACTCTTC-AAGG  246
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GTGCCCTCAGTCCCAGGCTTTACCTGGGGAGGGCTAAAACTCTTCAAAGG  248

seq1  CCCAGCTTCACC-AATGCAGCATGTCCTCTTTAAGTTCCAACCATGCTCA  295
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CCCAGCTTCACCAAATGCAGCATGTCCTCTTT-AGTTCCAACCATGCTCA  297

seq1  GAGCATTAAGCCAGTGACAGGTTAGAGTATATTTCTAGCCTGTGTTCTAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTAAGCCAGTGACAGGTTAGAGTATATTTCTAGCCTGTGTTCTAG  347

seq1  AAGCTTTGCCATGGCCTATGCTTTCATATGTCTTAAGGTCCATGTTTCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGCCATGGCCTATGCTTTCATATGTCTTAAGGTCCATGTTTCCT  397

seq1  AATCTACTACCAACTCTACACACTTTCCCCCTTATGATAACATATTTGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTACCAACTCTACACACTTTCCCCCTTATGATAACATATTTGGT  447

seq1  ATTACCCTACTGGCCTTCCTTTCCTTGGATAACATCTATTTTCAAATCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCTACTGGCCTTCCTTTCCTTGGATAACATCTATTTTCAAATCTG  497

seq1  AGGCTTCTGCATTCTAGTACAGCCCCTGGGGTTTTATGGGCTTATCTCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGCATTCTAGTACAGCCCCTGGGGTTTTATGGGCTTATCTCTG  547

seq1  TCTCTAGAATGATTTCCAGGTGATCTCTCTTTTCTTTGTTCAGTTATCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAATGATTTCCAGGTGATCTCTCTTTTCTTTGTTCAGTTATCAC  597

seq1  CCATCTTCTCTTCTCCTGTACAGGCCAGGCACTGAGCAGAGTTAGGGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTCTTCTCCTGTACAGGCCAGGCACTGAGCAGAGTTAGGGTGT  647

seq1  TCATGTTCAAACCTGTACCCACTCTTTTGACTGGCGAGTTAAGTGACTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCAAACCTGTACCCACTCTTTTGACTGGCGAGTTAAGTGACTTG  697

seq1  TTAGACTTCAGCAGGCCAGTGGCTGAGCTACAGTTGCAGCCACATCTCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTCAGCAGGCCAGTGGCTGAGCTACAGTTGCAGCCACATCTCCT  747

seq1  GTAGGGTTTCACACTTATGCTCATTCTCTTGAAATGCACCTGCCACTGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTTCACACTTATGCTCATTCTCTTGAAATGCACCTGCCACTGCC  797

seq1  TTGAAGAGACAGTGCCATGGATAACTTGCTAAGATTTACAGTGACATTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGACAGTGCCATGGATAACTTGCTAAGATTTACAGTGACATTGG  847

seq1  ATGCTGTGTTCATAGGCGCCAGAGCATGTCAAGAACTTCTGAATAACATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGTTCATAGGCGCCAGAGCATGTCAAGAACTTCTGAATAACATA  897

seq1  GTGTCTTAGCTGGAGTTTCTATTGCTATTATCAGATGCCATGACCGAAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTAGCTGGAGTTTCTATTGCTATTATCAGATGCCATGACCGAAAG  947

seq1  CAACTTGGAGGGGAAGGGTTTATTTCATCTCAATTAAGGTTCCCTCTTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGAGGGGAAGGGTTTATTTCATCTCAATTAAGGTTCCCTCTTCC  997

seq1  CAAGTAACTCTAGCCTATGTCAAGTACACATAAAACTAGTCAGTAGAGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACTCTAGCCTATGTCAAGTACACATAAAACTAGTCAGTAGAGAT  1047

seq1  GGAATATTAGAAGCTGACCTAGAGACTAAGTCATGGAAAAGAACAAAAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTAGAAGCTGACCTAGAGACTAAGTCATGGAAAAGAACAAAAGA  1097

seq1  CTGAATTC  1103
      ||||||||
seq2  CTGAATTC  1105


seq1: chr4_110588528_110589590
seq2: B6Ng01-189N10.g_69_1140

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATT  50

seq1  TCTGGAGTTCAGCTTCATGAGCTCTTTGTATATCAGGCACAGATTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTCAGCTTCATGAGCTCTTTGTATATCAGGCACAGATTCTTAT  100

seq1  AAGATTCTTAAAAGATTTGCCTTCTCATTTTCTCAGGTTCCATATTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTTAAAAGATTTGCCTTCTCATTTTCTCAGGTTCCATATTCCCA  150

seq1  GATGGAAGAAGGAGGTAAGAAAGGAAAAGAGGAATTTAGGGGAGATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGAAGGAGGTAAGAAAGGAAAAGAGGAATTTAGGGGAGATTAGG  200

seq1  CAGCCCTGGTGATCAAGGGCCAAGGAGGCAATATTAGCACTTGTTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGTGATCAAGGGCCAAGGAGGCAATATTAGCACTTGTTGTTCA  250

seq1  GGAAGTAAGCTGTAGCCCTGATTTAGCATGACTGCTGCTGCTGAAAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAAGCTGTAGCCCTGATTTAGCATGACTGCTGCTGCTGAAAGTCC  300

seq1  CTGGAGCCTGGCCAGCCTGTATCCTTCCTGGGGTTCTTATTTTCAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTGGCCAGCCTGTATCCTTCCTGGGGTTCTTATTTTCAAACTG  350

seq1  TTTGCAAATAGAAGGAATGTTGCCAATTCACTGGGGCATAGAATCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATAGAAGGAATGTTGCCAATTCACTGGGGCATAGAATCCAGCA  400

seq1  GGGATGATGATGGTAATAACACTGAAGTGGCTGGTCAATGATGCCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATGATGGTAATAACACTGAAGTGGCTGGTCAATGATGCCATCAG  450

seq1  GGGACCTGAAAGAGGTGGTGTCTGTTTATTTTAATAAGAATTCCTGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGAAAGAGGTGGTGTCTGTTTATTTTAATAAGAATTCCTGCCCC  500

seq1  TAAATGCCTTCTCTTCCTGGGCTAGCATCTGTTCCTAGGATTAAAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCTTCTCTTCCTGGGCTAGCATCTGTTCCTAGGATTAAAGGAAA  550

seq1  GTCTGCCTGCTCCTTTCTAGAACTAAAGACCCTTTTGTTTGGCCTGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTGCTCCTTTCTAGAACTAAAGACCCTTTTGTTTGGCCTGAGCA  600

seq1  AAGTGACCCTGGTCTACATGAACATTTTCTGACCTGGCCAGAAAGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCCTGGTCTACATGAACATTTTCTGACCTGGCCAGAAAGAGGTA  650

seq1  AAGATGGACAGGACCCTGAAAAGAAGCAACAGACATGCGAGCTTAGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGACAGGACCCTGAAAAGAAGCAACAGACATGCGAGCTTAGCCAG  700

seq1  AGCTGTGCTTTATTCCTCAGAGAGGACTAGCTCAGGGTGCCAGGTTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCTTTATTCCTCAGAGAGGACTAGCTCAGGGTGCCAGGTTAGGC  750

seq1  TGGCAAATTCAAAGGCAGACGTTCCTGCCCACACAGCAGCCTCCAGGCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTCAAAGGCAGACGTTCCTGCCCACACAGCAGCCTCCAGGCCG  800

seq1  GAAGTTGGGGGTGGATCCAGATGGGAA-TCATATGTTTGTGCCATGTGTG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGTTGGGGGTGGATCCAGATGGGAATTCATATGTTTGTGCCATGTGTG  850

seq1  TTTTCATTGGAGGGGAAAAGAATCTCAT-GGCTGGCAACTTTCTGAGGGC  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTCATTGGAGGGGAAAAGAATCTCATGGGCTGGCAACTTTCTGAGGGC  900

seq1  TCTGTGCAG-AACTCACAGTGTAAGG-AGGGAAGGAGCTGC-TTGGAAGA  945
      ||||||||| |||||||||||||||| ||| |||||||||| ||||||||
seq2  TCTGTGCAGTAACTCACAGTGTAAGGAAGGAAAGGAGCTGCTTTGGAAGA  950

seq1  TTCTATGT-AGTGAATTTTT-GGAAGCCTTAAAAGGAGCAGAGC-CTGGG  992
      |||||||| ||||||||||| ||||||||||||| ||||||||| |||||
seq2  TTCTATGTAAGTGAATTTTTGGGAAGCCTTAAAA-GAGCAGAGCTCTGGG  999

seq1  TAG-ATTCTATGTTGTTATCTCATTGGATTCCAGAC-AACGGACTCTAGA  1040
      ||| |||||||||||||||||||||| ||||   || |||||||||||||
seq2  TAGAATTCTATGTTGTTATCTCATTGAATTCAGAACAAACGGACTCTAGA  1049

seq1  CTACTCAAAAACTCACCTTTTTT  1063
      |||||||||||||||||||||||
seq2  CTACTCAAAAACTCACCTTTTTT  1072


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