BAC Information

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BAC

Clone NameB6Ng01-190E18
Chromosome4 (Build37)
Map Location 70,262,562 - 70,405,230
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190E18.bB6Ng01-190E18.g
ACCGA014087GA014088
length1,0801,152
definitionB6Ng01-190E18.b B6Ng01-190E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,404,149 - 70,405,230)(70,262,562 - 70,263,722)
sequence
gaattcaccttgtgaggtaagcagtagaatccaaagaaactaagtgtatt
tcagtatctctttatggttcttttccatagtgaactagatacatttttgg
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctctctctctctctctctctctctctctctctctctctaatttct
ctgtccctccctccctccctccctcccccctctctctttgtttctctctc
tcttccttttttctctttctttctttctttctttctttctttctttcttt
ctctttttctttcctttttcctttgagctccacatctgctccagtctgta
tagatatagttgtgagattacttgtgagctttagataagctgagggtctt
ctgtatcaatctgacattcttagaggctgcttatggagtcaggacatatg
tttgtgggcagctgggttttgtgtccaaatttgaaacacttgcttcaaac
tgatttattctaccatatggggaaatgattttcagccaaagcatttaatt
aacagtgaatctgagtaaccctatgtttgcttgtaccacatgttaaatgc
tgaacattgtgataaccagacaaatgtacttgcatgctaacccgggttcc
tgccccttcccatctggtaatgacagcacccaagcctctttttttgccat
tttctctcactccagtttctgcattccaaatggtgacaatcaatagttgg
ggtggggagggaaagatacacatatttgggagcaaacaacaaaattcagt
tggcaataattgtttttttaacaggactaaccagaaaaaatatgtaaata
tatgaaaagtaaaaggttttctttaaacattcaatttaggtattttaatc
agtatcttattaatgtgtttgaaagattttcctttgttagtgctaaattc
ctctgggttataagatcatagagaaagggaacctttctaaaatcattaat
acaattgtctacttctttacattgttctgatcatagagaaccaaacccat
ggtggagttggaaaatacgtagttatgagc

gaattcattgcacatgagcagtattgccttactttgttccaaagctgaga
atggggacagacccgagtcaccttcctgtacacatttcctctctcaaaca
gaaacccaacactactgaaggaaactcacacatgctctcctatgggagcc
acaccaacccctctgcctgacaaaaatcccaaagtcttttagacgaaggc
atgtctagggaaccccagggcatgaatgtcattagacaattaaggccagt
gtctttatacctagctaaaagtttcactttacaaaccatgtcagatgtca
tggcagaattcagtcattctcctgaattacatgaataaatgtgtaatagg
aactgcatcatttgtgattgtggaatgtcaaaaagaaactatctggcatg
gtagttccagtactacttctagttctccagaaggagggcaggggctagcc
aatttctggtagtagtttagccttgtctacattagtagttctaggctaaa
cacaaacagaaaaaacaaaaacaaagccaagcccttgtctaccaacatat
gtttcttagtaaaggtacacccaagatgagcttgtcactgcaatattagt
tgtgttatttctgtgtagagtgtaagatcaaacttcaatgccaatatgaa
ttaaacaaccttgcaaccagtgcagtgtagacaaaaacataagtgaataa
aacagtatcaaagtgtaaagcccacaattgaactttacatgtgatatttt
gtaagccacactaataaaatttatagtgatgtcaggagaaatgagtgtgt
tagaaaactatcatgtatttggcttagacacataaatgtttatacctgct
ccagaattattttacataggtactatttttccttatgaaatatcttatag
aatctcctggtttataaacttctacttattctactttctgggacgactta
tatttataggcagtagtatatgccattgactaaattaggagctcatcttt
gcacattaagctaaaaataacatatcaaagtttaggattccacaattaga
cttaatagaagaatctctgtaggttggggtgaacagcttgcctagcattc
cacaggcaatctgctgtgtaaatggaggcatttctctgtatcagaatgca
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_70404149_70405230
seq2: B6Ng01-190E18.b_45_1124 (reverse)

seq1  GCTCTATAACTTCTGTATTTT-CTACT-CACCATGGGTTTGGTTCTCTTA  48
      |||| |||||| | ||||||| | ||| ||||||||||||||||||||  
seq2  GCTC-ATAACTAC-GTATTTTCCAACTCCACCATGGGTTTGGTTCTCT--  46

seq1  ATGATCAGAACAATGTAAAGAAGTAGACAATTGTATTATTGATTTTAGAA  98
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGATCAGAACAATGTAAAGAAGTAGACAATTGTATTAATGATTTTAGAA  96

seq1  AGGTTCCCTTTTCTCTATGATCTTATAACCCAGAGGAATTTTAGCACTAA  148
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTTCCC-TTTCTCTATGATCTTATAACCCAGAGGAA-TTTAGCACTAA  144

seq1  CAAAGG-AAATCTTTCAAAACACATTAATAAGATACTGATT-AAATACCT  196
      |||||| ||||||||| |||||||||||||||||||||||| ||||||||
seq2  CAAAGGAAAATCTTTC-AAACACATTAATAAGATACTGATTAAAATACCT  193

seq1  AAATTGAATGTTTAAAG-AAACCTTTTACTTTTCATATATTTACATATTT  245
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAATTGAATGTTTAAAGAAAACCTTTTACTTTTCATATATTTACATATTT  243

seq1  TTTCTGGTTAGTCCTGTTAAAAAAACAATTATTGCCAACTGAATTTTGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTAGTCCTGTTAAAAAAACAATTATTGCCAACTGAATTTTGTT  293

seq1  GTTTGCTCCCAAATATGTGTATCTTTCCCTCCCCACCCCAACTATTGATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCCCAAATATGTGTATCTTTCCCTCCCCACCCCAACTATTGATT  343

seq1  GTCACCATTTGGAATGCAGAAACTGGAGTGAGAGAAAATGGCAAAAAAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTTGGAATGCAGAAACTGGAGTGAGAGAAAATGGCAAAAAAAG  393

seq1  AGGCTTGGGTGCTGTCATTACCAGATGGGAAGGGGCAGGAACCCGGGTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGGTGCTGTCATTACCAGATGGGAAGGGGCAGGAACCCGGGTTA  443

seq1  GCATGCAAGTACATTTGTCTGGTTATCACAATGTTCAGCATTTAACATGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAGTACATTTGTCTGGTTATCACAATGTTCAGCATTTAACATGT  493

seq1  GGTACAAGCAAACATAGGGTTACTCAGATTCACTGTTAATTAAATGCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGCAAACATAGGGTTACTCAGATTCACTGTTAATTAAATGCTTT  543

seq1  GGCTGAAAATCATTTCCCCATATGGTAGAATAAATCAGTTTGAAGCAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAATCATTTCCCCATATGGTAGAATAAATCAGTTTGAAGCAAGT  593

seq1  GTTTCAAATTTGGACACAAAACCCAGCTGCCCACAAACATATGTCCTGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATTTGGACACAAAACCCAGCTGCCCACAAACATATGTCCTGAC  643

seq1  TCCATAAGCAGCCTCTAAGAATGTCAGATTGATACAGAAGACCCTCAGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGCAGCCTCTAAGAATGTCAGATTGATACAGAAGACCCTCAGCT  693

seq1  TATCTAAAGCTCACAAGTAATCTCACAACTATATCTATACAGACTGGAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAGCTCACAAGTAATCTCACAACTATATCTATACAGACTGGAGC  743

seq1  AGATGTGGAGCTCAAAGGAAAAAGGAAAGAAAAAGAGAAAGAAAGAAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGAGCTCAAAGGAAAAAGGAAAGAAAAAGAGAAAGAAAGAAAGA  793

seq1  AAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGGAAGAGAGAGAGAAACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGGAAGAGAGAGAGAAACAA  843

seq1  AGAGAGAGGGGGGAGGGAGGGAGGGAGGGAGGGACAGAGAAATTAGAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGGGGAGGGAGGGAGGGAGGGAGGGACAGAGAAATTAGAGAG  893

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAA  943

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACCAAAAATGTATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACCAAAAATGTATC  993

seq1  TAGTTCACTATGGAAAAGAACCATAAAGAGATACTGAAATACACTTAGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCACTATGGAAAAGAACCATAAAGAGATACTGAAATACACTTAGTT  1043

seq1  TCTTTGGATTCTACTGCTTACCTCACAAGGTGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGATTCTACTGCTTACCTCACAAGGTGAATTC  1080


seq1: chr4_70262562_70263722
seq2: B6Ng01-190E18.g_64_1215

seq1  GAATTCATTGCACATGAGCAGTATTGCCTTACTTTGTTCCAAAGCTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCACATGAGCAGTATTGCCTTACTTTGTTCCAAAGCTGAGA  50

seq1  ATGGGGACAGACCCGAGTCACCTTCCTGTACACATTTCCTCTCTCAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACAGACCCGAGTCACCTTCCTGTACACATTTCCTCTCTCAAACA  100

seq1  GAAACCCAACACTACTGAAGGAAACTCACACATGCTCTCCTATGGGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAACACTACTGAAGGAAACTCACACATGCTCTCCTATGGGAGCC  150

seq1  ACACCAACCCCTCTGCCTGACAAAAATCCCAAAGTCTTTTAGACGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAACCCCTCTGCCTGACAAAAATCCCAAAGTCTTTTAGACGAAGGC  200

seq1  ATGTCTAGGGAACCCCAGGGCATGAATGTCATTAGACAATTAAGGCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGGGAACCCCAGGGCATGAATGTCATTAGACAATTAAGGCCAGT  250

seq1  GTCTTTATACCTAGCTAAAAGTTTCACTTTACAAACCATGTCAGATGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATACCTAGCTAAAAGTTTCACTTTACAAACCATGTCAGATGTCA  300

seq1  TGGCAGAATTCAGTCATTCTCCTGAATTACATGAATAAATGTGTAATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAATTCAGTCATTCTCCTGAATTACATGAATAAATGTGTAATAGG  350

seq1  AACTGCATCATTTGTGATTGTGGAATGTCAAAAAGAAACTATCTGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATCATTTGTGATTGTGGAATGTCAAAAAGAAACTATCTGGCATG  400

seq1  GTAGTTCCAGTACTACTTCTAGTTCTCCAGAAGGAGGGCAGGGGCTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCAGTACTACTTCTAGTTCTCCAGAAGGAGGGCAGGGGCTAGCC  450

seq1  AATTTCTGGTAGTAGTTTAGCCTTGTCTACATTAGTAGTTCTAGGCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGGTAGTAGTTTAGCCTTGTCTACATTAGTAGTTCTAGGCTAAA  500

seq1  CACAAACAGAAAAAACAAAAACAAAGCCAAGCCCTTGTCTACCAACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAGAAAAAACAAAAACAAAGCCAAGCCCTTGTCTACCAACATAT  550

seq1  GTTTCTTAGTAAAGGTACACCCAAGATGAGCTTGTCACTGCAATATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAGTAAAGGTACACCCAAGATGAGCTTGTCACTGCAATATTAGT  600

seq1  TGTGTTATTTCTGTGTAGAGTGTAAGATCAAACTTCAATGCCAATATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATTTCTGTGTAGAGTGTAAGATCAAACTTCAATGCCAATATGAA  650

seq1  TTAAACAACCTTGCAACCAGTGCAGTGTAGACAAAAACATAAGTGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAACCTTGCAACCAGTGCAGTGTAGACAAAAACATAAGTGAATAA  700

seq1  AACAGTATCAAAGTGTAAAGCCCACAATTGAACTTTACATGTGATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATCAAAGTGTAAAGCCCACAATTGAACTTTACATGTGATATTTT  750

seq1  GTAAGCCACACTAATAAAATTTATAGTGATGTCAGGAGAAATGAGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCACACTAATAAAATTTATAGTGATGTCAGGAGAAATGAGTGTGT  800

seq1  TAGAAAACTATCATGTATTTGGCTTAGACACATAAATGTTTATACCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACTATCATGTATTTGGCTTAGACACATAAATGTTTATACCTGCT  850

seq1  CCAGAATTATTTTACATAGGTACTATTTTTCCTTATGAAATATCTTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTATTTTACATAGGTACTATTTTTCCTTATGAAATATCTTATAG  900

seq1  AATCTCCTGGTTTATAAACTTCTAC-TATTCTACTTTCTGGGACGACTTA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATCTCCTGGTTTATAAACTTCTACTTATTCTACTTTCTGGGACGACTTA  950

seq1  TATTTATAGGCAGTAGTATAATGCCATTGACTAAAATTAGGAGCTCATCT  999
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  TATTTATAGGCAGTAGTAT-ATGCCATTGACT-AAATTAGGAGCTCATCT  998

seq1  TTGCACATTAAGCTAAAAAT-ACATATCAAAGTTTAAGATTCCACAATTA  1048
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TTGCACATTAAGCTAAAAATAACATATCAAAGTTTAGGATTCCACAATTA  1048

seq1  GACTTATAGGAAGAATCCTCTTGTAGGTTGGGGTGAACAGCTTTGCCTAG  1098
      ||||||   ||||||| ||| |||||||||||||||||||| ||||||||
seq2  GACTTAATAGAAGAAT-CTC-TGTAGGTTGGGGTGAACAGC-TTGCCTAG  1095

seq1  CATTTCCCAACAAGCAATTCCTGCTGTGTAAATGAGGGCATTTCTCTGTT  1148
      ||||   | ||| |||||  ||||||||||||||  |||||||||||| |
seq2  CATT---CCACAGGCAAT--CTGCTGTGTAAATGGAGGCATTTCTCTG-T  1139

seq1  ATCAGGATGCAAG  1161
      ||||| |||||||
seq2  ATCAGAATGCAAG  1152


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