BAC Information

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BAC

Clone NameB6Ng01-190G14
Chromosome4 (Build37)
Map Location 115,512,651 - 115,513,827
singlet/doubletsinglet
Overlap geneMknk1
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c
Downstream geneKncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190G14.bB6Ng01-190G14.g
ACCGA014172GA014173
length1,2031,169
definitionB6Ng01-190G14.b B6Ng01-190G14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaagaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttccaca
gaaaattggacatagtactaccggagtatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
atagatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactctcacaatatgtactcactgataagtggatattagcccaaaact
taggatacccaagttataagatacaaattgctaaatgcatgaaactcaag
aagaatgaagaccaaagtgtagacactgtgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agcatccaaacgttgataccactgcacacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcatagtcagctactggatggatcacagggctccca
atggaggagctagagaaagaacccaaggagctaaagggatctgcaaccct
ataggtggaacacattatgaactaacagtaccccggagcttcttaactct
agctgcatatgggatcaaagatgctagtcgcatcactgcaagagaggccc
atgacacgcaactttatatgccagttaacgggacccaagggtcaaaaatg
tatggttggctagggactggctctctaccgagatagcatgtagtaggacg
tat
gaattcctgcacctttgtgcctctggtgcctgtaagtagggcaacatcca
tctaaccagggccctccttagccatgaaggaaaacatgaggtctccttct
aatcttgatggcttgtaaaacaaagaccaaagagggataaaaaaaaaaaa
aggcactgactcatttgaccacaagcattacagagacctactatgtgcca
gtcctgtaccatgaagagcaggtgtgacatagacttggctccttgccacc
aactgtagtcggggtacatatgagtgatgtaccccaagacagactttgct
aagacgtctataggaagctcagtctctgctacaggagactggattgggag
catctaaccagcaggaggatgagacgcgtcaccaaagatgtggtgtgagc
acccgtgaagaagctgcagaaggtgccatattattgaataactacagacc
acacaacaggagacctagctaaacatgtgctgcaatttgccagcttcttc
tcagaacttctctctccatggttgggttggctggtgccaggccctctgac
tgccaaatctgcactagagaaatgacactcctatgcaagccaaagaccct
ggattatagaaagaggaacactgaggtgggaacagatgctccgaaggggc
tccaaacttcctggctagttcacttttttttttggttttcgagacagggt
ttctctgtgtagccctggctgtcctggaactcactctgtagaccagactg
gcctcgaactcagaaatctgcctgcctctgcctcctgaatgctgggatta
aaggcatgtgccaccacgcccagcttgttttttttgtttgttgtttgttt
gtttttgtttttatttatttatttattaatttgctagttcacttctatac
acaatcctgactccgtgtctattcttcacagtacttccagccagtccctt
tagaaggcccgaagctaggacagtgggcagcagcctctctgatggctggg
atccaggaaacattatacatcaaccactcagctgatcctggcacaaaggc
ctgtggtcacaagttgagcctcccctcctcataactgcagtcagtccaca
ggttaatccaggagcctccaaggctcaaggttacatcagctcctccccta
aggctccctggaaaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115512651_115513827
seq2: B6Ng01-190G14.g_65_1233 (reverse)

seq1  CATATTT--CAGGGAGGCCCTGGGGGGAGAAGCTGATGTAACC-TGAGCC  47
      |||||||  |||||||  |||  |||||| ||||||||||||| ||||||
seq2  CATATTTTCCAGGGAG--CCTTAGGGGAGGAGCTGATGTAACCTTGAGCC  48

seq1  TTGGAGCCTCTGGGATTTACACGTGGAATTGACCTTGCAG-TATGAGGAG  96
      |||||| |||  ||||| ||  |||| | ||||  ||||| |||||||||
seq2  TTGGAGGCTCCTGGATTAACCTGTGG-ACTGAC--TGCAGTTATGAGGAG  95

seq1  GG--AGCTCAAACTTGTTGACCACAGGCC-TTGTGCCAAGAACCAGCTGA  143
      ||   |||| |||||| |||||||||||| ||||||| || | |||||||
seq2  GGGAGGCTC-AACTTG-TGACCACAGGCCTTTGTGCC-AGGATCAGCTGA  142

seq1  GTGGTTGATGTATAATGTTTCCCTGGATCCCCAGCCATCAGAGA-GCTGC  192
      |||||||||||||||||||| ||||||| ||||||||||||||| |||||
seq2  GTGGTTGATGTATAATGTTT-CCTGGAT-CCCAGCCATCAGAGAGGCTGC  190

seq1  TGCCCACTGTCCCTAGCTTCGGGCCTTCTAAAGGGCCTGGGCTGGAAGTA  242
      |||||||||| |||||||||||||||||||||||| || |||||||||||
seq2  TGCCCACTGT-CCTAGCTTCGGGCCTTCTAAAGGGACT-GGCTGGAAGTA  238

seq1  CTGTGAAGAATAGACACGGAGTCAGGATTGTGTATAGAAGTGAACTAGCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTGAAGAATAGACACGGAGTCAGGATTGTGTATAGAAGTGAACTAGC-  287

seq1  AAATAAATAAATAAATAAAATAAAAAACAAAAAACAAACAAACAAACAAA  342
      |||| ||||||||||| |||||||||   |||||||||||||| ||||||
seq2  AAATTAATAAATAAAT-AAATAAAAA--CAAAAACAAACAAAC-AACAAA  333

seq1  CAAAAAAAACAAGCTGGGCGTGGTGGCACATGCCTTTAATCCCAGCATTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAACAAGCTGGGCGTGGTGGCACATGCCTTTAATCCCAGCATTC  383

seq1  AGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGTCTGGTCTACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGTCTGGTCTACA  433

seq1  GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAA  483

seq1  ACC-AAAAAAAAAGTGAACTAGCCAGGAAGTTTGGAGCCCCTTCGGAGCA  541
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAAAAGTGAACTAGCCAGGAAGTTTGGAGCCCCTTCGGAGCA  533

seq1  TCTGTTCCCACCTCAGTGTTCCTCTTTCTATAATCCAGGGTCTTTGGCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCCACCTCAGTGTTCCTCTTTCTATAATCCAGGGTCTTTGGCTT  583

seq1  GCATAGGAGTGTCATTTCTCTAGTGCAGATTTGGCAGTCAGAGGGCCTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGAGTGTCATTTCTCTAGTGCAGATTTGGCAGTCAGAGGGCCTGG  633

seq1  CACCAGCCAACCCAACCATGGAGAGAGAAGTTCTGAGAAGAAGCTGGCAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCAACCCAACCATGGAGAGAGAAGTTCTGAGAAGAAGCTGGCAA  683

seq1  ATTGCAGCACATGTTTAGCTAGGTCTCCTGTTGTGTGGTCTGTAGTTATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCACATGTTTAGCTAGGTCTCCTGTTGTGTGGTCTGTAGTTATT  733

seq1  CAATAATATGGCACCTTCTGCAGCTTCTTCACGGGTGCTCACACCACATC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATGGCACCTTCTGCAGCTTCTTCACGGGTGCTCACACCACATC  783

seq1  TTTGGTGACGCGTCTCATCCTCCTGCTGGTTAGATGCTCCCAATCCAGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGACGCGTCTCATCCTCCTGCTGGTTAGATGCTCCCAATCCAGTC  833

seq1  TCCTGTAGCAGAGACTGAGCTTCCTATAGACGTCTTAGCAAAGTCTGTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGCAGAGACTGAGCTTCCTATAGACGTCTTAGCAAAGTCTGTCT  883

seq1  TGGGGTACATCACTCATATGTACCCCGACTACAGTTGGTGGCAAGGAGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACATCACTCATATGTACCCCGACTACAGTTGGTGGCAAGGAGCC  933

seq1  AAGTCTATGTCACACCTGCTCTTCATGGTACAGGACTGGCACATAGTAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATGTCACACCTGCTCTTCATGGTACAGGACTGGCACATAGTAGG  983

seq1  TCTCTGTAATGCTTGTGGTCAAATGAGTCAGTGCCTTTTTTTTTTTTTAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAATGCTTGTGGTCAAATGAGTCAGTGCCTTTTTTTTTTTTTAT  1033

seq1  CCCTCTTTGGTCTTTGTTTTACAAGCCATCAAGATTAGAAGGAGACCTCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGGTCTTTGTTTTACAAGCCATCAAGATTAGAAGGAGACCTCA  1083

seq1  TGTTTTCCTTCATGGCTAAGGAGGGCCCTGGTTAGATGGATGTTGCCCTA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTTCATGGCTAAGGAGGGCCCTGGTTAGATGGATGTTGCCCTA  1133

seq1  CTTACAGGCACCAGAGGCACAAAGGTGCAGGAATTC  1177
      ||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGCACCAGAGGCACAAAGGTGCAGGAATTC  1169