BAC Information

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BAC

Clone NameB6Ng01-190I02
Chromosome4 (Build37)17 (Build37)
Map Location 78,864,413 - 78,865,26139,985,324 - 39,985,807
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039996, LOC100040026, LOC100040036
Downstream geneLOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190I02.bB6Ng01-190I02.g
ACCGA014244GA014245
length849723
definitionB6Ng01-190I02.b B6Ng01-190I02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,864,413 - 78,865,261)(39,985,324 - 39,985,807)
sequence
gaattcagtggcttctagggttctacttgtttataatggctgggcacata
ggtaattgaacaaggtacaggaatatgtagcataatggggaaggtttgag
aggtcttatagtcggtaggatgggcacagttgcttggacaaaggcttttg
cctttgggggcacaacagccccagggatcttaggacctgtgtctatgtag
atgggtgtttgtacaaggtctctgtggtaaaccttatctgtactttgaga
actactaagtgactctttgacattacaatggaaaagtaaataagtgggga
atagcctgtaagaccttcacttaaaaaataagaactaaaggtgtaaataa
atgtttataataaagcattctatatattcctataataatgaaaattccca
ttgcaaatatcctagaaggcagcaacagatgctgcattgtgatatcagga
attacttccagtgtatggagcaataaagaaatatttttaaagtgagaaaa
cactgaactaacattaaataaattaaataatttatttaaatattaaataa
aagttctaatattttattccttacatgttcaacttgcctaggtcagtgtt
tgtggcatttgatcatgcagaagcttgtgttttgtttgtttgtttgtttg
gtcttgctttttttttttcctgcagccctcacattttctgagtgcttaat
ttcagaatgaagctagattcactaaaggagagtagaaaatagccatattc
aaatgctaagaacagccaaaaaaaggatttggcatattcttttactgatt
tgattccagtcatgtatatatatgactctgtgtgtgtgtgtgtgtgtgt

gaattcatagttaacactgctggtgtgaacaagaaccagagagtagataa
agtaaaaatctagggtaaagccacacagtacttgtaaaaaaaaaaagtca
ataaagtaacacctaatgatgctctgcaatattcataaatcagtgcctta
tgcagtcaccatcagaaaaacttcctctttcaacattcaggaacataagc
agagacacatagccagacaattgtcaaagagacaatcattgggtgactca
gccctaaatggtatgcctctatcaaatccttcctttcagagttcagggaa
ctcatcagaaaaagaagaagaaagagtgagagtcagagaagatataggac
accaggaaaacggagccctaaatcaaataagcaaggctcatatgaagtca
cagagattgaatcaacaaaatcagggcctatatggatcaggaccaggtcc
tctgcatatttatatagtatagctttcagttttttactttttcagacttt
ggagtatgtgaataactggttctctgattcttggacctctttacttttgt
tgggttgccttgtctagccttggatgtgatgttttttttttttttttttt
tggttgttgttttttttttttttatatatcttatttggtcatgtttgact
gcttactaatagaagcctgtacttttgtatcatgacaaggaaaggggtgg
atgcagaggggagggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78864413_78865261
seq2: B6Ng01-190I02.b_44_892

seq1  GAATTCAGTGGCTTCTAGGGTTCTACTTGTTTATAATGGCTGGGCACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCTTCTAGGGTTCTACTTGTTTATAATGGCTGGGCACATA  50

seq1  GGTAATTGAACAAGGTACAGGAATATGTAGCATAATGGGGAAGGTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTGAACAAGGTACAGGAATATGTAGCATAATGGGGAAGGTTTGAG  100

seq1  AGGTCTTATAGTCGGTAGGATGGGCACAGTTGCTTGGACAAAGGCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTATAGTCGGTAGGATGGGCACAGTTGCTTGGACAAAGGCTTTTG  150

seq1  CCTTTGGGGGCACAACAGCCCCAGGGATCTTAGGACCTGTGTCTATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGGCACAACAGCCCCAGGGATCTTAGGACCTGTGTCTATGTAG  200

seq1  ATGGGTGTTTGTACAAGGTCTCTGTGGTAAACCTTATCTGTACTTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTTTGTACAAGGTCTCTGTGGTAAACCTTATCTGTACTTTGAGA  250

seq1  ACTACTAAGTGACTCTTTGACATTACAATGGAAAAGTAAATAAGTGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAGTGACTCTTTGACATTACAATGGAAAAGTAAATAAGTGGGGA  300

seq1  ATAGCCTGTAAGACCTTCACTTAAAAAATAAGAACTAAAGGTGTAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGTAAGACCTTCACTTAAAAAATAAGAACTAAAGGTGTAAATAA  350

seq1  ATGTTTATAATAAAGCATTCTATATATTCCTATAATAATGAAAATTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATAATAAAGCATTCTATATATTCCTATAATAATGAAAATTCCCA  400

seq1  TTGCAAATATCCTAGAAGGCAGCAACAGATGCTGCATTGTGATATCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATATCCTAGAAGGCAGCAACAGATGCTGCATTGTGATATCAGGA  450

seq1  ATTACTTCCAGTGTATGGAGCAATAAAGAAATATTTTTAAAGTGAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCCAGTGTATGGAGCAATAAAGAAATATTTTTAAAGTGAGAAAA  500

seq1  CACTGAACTAACATTAAATAAATTAAATAATTTATTTAAATATTAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTAACATTAAATAAATTAAATAATTTATTTAAATATTAAATAA  550

seq1  AAGTTCTAATATTTTATTCCTTACATGTTCAACTTGCCTAGGTCAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAATATTTTATTCCTTACATGTTCAACTTGCCTAGGTCAGTGTT  600

seq1  TGTGGCATTTGATCATGCAGAAGCTTGTGTTTTGTTTGTTTGTTTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCATTTGATCATGCAGAAGCTTGTGTTTTGTTTGTTTGTTTGTTTG  650

seq1  GTCTTGCTTTTTTTTTTTCCTGCAGCCCTCACATTTTCTGAGTGCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTTTTTTTTTTCCTGCAGCCCTCACATTTTCTGAGTGCTTAAT  700

seq1  TTCAGAATGAAGCTAGATTCACTAAAGGAGAGTAGAAAATAGCCATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGAAGCTAGATTCACTAAAGGAGAGTAGAAAATAGCCATATTC  750

seq1  AAATGCTAAGAACAGCCAAAAAAAGGATTTGGCATATTCTTTTACTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAAGAACAGCCAAAAAAAGGATTTGGCATATTCTTTTACTGATT  800

seq1  TGATTCCAGTCATGTATATATATGACTCTGTGTGTGTGTGTGTGTGTGT  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAGTCATGTATATATATGACTCTGTGTGTGTGTGTGTGTGTGT  849


seq1: chr17_39985324_39985807
seq2: B6Ng01-190I02.g_645_786 (reverse)

seq1  TCCCCTCCCCCTCCCCTCTCCCTCGTCCGGCTCTGACCTCGCCACCCTAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CGCGGCGGCGGCTGCTCGCGGGCGTCGTGCCTCTTTCCCGTCCGGCTCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCGTGTCTACGAGGGGCGGTACGTCGTTACGGGTTTTTGACCCGTCCCGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCGTTCGGTCGTCGGGGCGCGCGCTTTGCTCTCCCGGCACCCATCCCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCCGCGGCTCTGGCTTTTCTACGTTGGCTGGGGCGGTTGTCGCGTGTGGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGGATGTGAGTGTCGCGTGTGGGTTCGCCCGTCCCGATGCCACGCTTTTC  300
                                 ||| ||||              |
seq2  --------------------------TCCCCTCCC-------------CC  11

seq1  TGGCCTCGCGTGTCCTCCCCGCTCCTGTCCCGGGTACCTAGCTGTCGCGT  350
      |  ||||  |  ||| ||||  ||||   |  | |||  |        ||
seq2  TCCCCTC-TGCATCCACCCCTTTCCTTGTCATGATACAAA-------AGT  53

seq1  TCCGGCGCGGAGGTTTAAAGACCCCGGGGGGGTCGCCCTGCCGCCCCCAG  400
       | |||    |    |||          |  |||   |    | ||  | 
seq2  ACAGGCTTCTATTAGTAA----------GCAGTCAAAC--ATGACCAAA-  90

seq1  GGTCGGGGGGCGGTGGGGCCCGTAGGGAAGTCGGTCGTTCGGGCGGCTCT  450
                   |  |     ||   ||                     
seq2  -------------TAAGATATATAAAAAA---------------------  106

seq1  CAAAAAAAA----TACCAAAAAAAAAAAAAAAAGAAAA  484
       ||||||||     ||||||||||||||||||| ||| 
seq2  -AAAAAAAACAACAACCAAAAAAAAAAAAAAAAAAAA-  142


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