BAC Information

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BAC

Clone NameB6Ng01-190K12
Chromosome4 (Build37)
Map Location 127,097,132 - 127,184,656
singlet/doubletdoublet
Overlap genenone
Upstream geneEif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190K12.bB6Ng01-190K12.g
ACCGA014358GA014359
length1,0991,172
definitionB6Ng01-190K12.b B6Ng01-190K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,097,132 - 127,098,235)(127,183,494 - 127,184,656)
sequence
gaattcttctggtcgccggccagaggagcacaatgctgacaggttgagac
aatgagaggggtcttgtctcaggtgtacagattacaggcaggactgtgtt
gacagaggatttggatctttttttttttctttttttaatcacgtgtagga
aaataccatgagctgcacaaccgcccagtcttacagacaaaaaagttagt
tacctttctcttcccagtggcaattaaatatcctagaaaaacatctgatt
ggctcagaccaagcaggtgccgatgccctgagtcagtacctatggctcaa
gggagggccgttacagcagatggtcagtagctgccattatgccataggct
agaattgggagatgaaggtggatcagatctattgtttctagctatatttt
cattttcaaatgaaggaagttatctctttctatcttgagacagggcatca
tctatttcaggttggcctcaaactctctgtgtagccaaggatggccttga
acttctgatttttctgtcttcccctccctagttctgggattaaaggcata
tggcactatgtctggcttttgtagtgttggggatcgaacccaggacctcg
cgggagctcagtaagcatgctaccaactgagccacacctccagctcttat
ttacacttttaacttactgagatgtaaacttcttacggatctagggaatg
tcagtgatgaagttgcacagaaagggcagcagatagctgtaactttaatg
tcacttcagagagccatgttagccctgtcttttattcattgaacaaaatc
tggtgaatttccactgtgtatcaggcactgatttattgacagcttatggc
aatgaagacactatttttgacttcttggagcttgcagttttataagggaa
acaggaaaataatacaaagagaggagaaaacgtgggggaggtgtggttca
gataggaaatcaggggcaactaaaggagacagagttaacagttggggaga
atgggttgtactgaagcgggtggtggaccatcttgtgcaaaagccttgaa
gtagcgatgggttgggtgtgtctggaataatcccaagacaacaaagcag
gaattcaccaggggcaggggttgttgcttggaagttggtggtctgggagg
acaaggttgctgtaactcgggaaagatttcataacagaggcgaatgctga
aagtcaaaggaagtgctatgaggtaatactgtcacaacatacattattaa
acatttatctatgtcaggctccaagctaagtgctgtgtatattttatctc
atgtaactgacagaggcagaacatgaaccccaaagagtcagattccaggg
ctgcccacacttaatgaacacactacaaagtctctcaaagcatgagcaaa
gatgaaacgggaagatgtcttgagcagagacatcaaacgaagacaaagat
agtcggaaggtctcagacaagatctggcaggatgtcagctctggcccatg
tgaagatgacagagactaaaggctaagcctggctatcaggctgaaggctt
tagccatggacacgtaggctgtaagatgtggcatggaatcttgatcacct
agcgccagagacagtgctctggagggctttaaagacaagaaaggcagaga
ccaatcggtaggtgtcagagtaacccaggtgacaaatgaatccttgtctc
tggggagatcaagaacccttgcaaaagaacacgccctgacgtctgaagat
accatgggcatctccaccctagccaagaattgtttccacttcagtgtaaa
ctaaagtattgactctgctctgacttccaccccagaccccaatgctgcat
ctgtttccatttatcaacacaaacagaacaaaagtcaccaacattggcta
attgcctttgtgctgcctggagggtccaggggttccaaagtcattagcca
gggctgggtttaaagtcactgacctccagtctctccaggattctgagggg
ggaagctgaatttaattgacccgattaggtggggaaaaaaacaatttctg
tgatgactttcatgggaaataagcactagctgggtagaacctttggggga
caaataaaatttccaatagcccaaagagcttcacagccaacaggttgttc
tacttttagccctgatacctgtgcagcatcctttcctcccttaaacaccc
agtgtttgctagaggcctttgaaagtaggtggagtcaatggtacttatct
tgtcttcctcttatcctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_127097132_127098235
seq2: B6Ng01-190K12.b_30_1128

seq1  GAATTCTTCTGGTCGCCGGCCAGAGGAGCACAATGCTGACAGGTTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGTCGCCGGCCAGAGGAGCACAATGCTGACAGGTTGAGAC  50

seq1  AATGAGAGGGGTCTTGTCTCAGGTGTACAGATTACAGGCAGGACTGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGGGGTCTTGTCTCAGGTGTACAGATTACAGGCAGGACTGTGTT  100

seq1  GACAGAGGATTTGGATCTTTTTTTTTTTCTTTTTTTAATCACGTGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGATTTGGATCTTTTTTTTTTTCTTTTTTTAATCACGTGTAGGA  150

seq1  AAATACCATGAGCTGCACAACCGCCCAGTCTTACAGACAAAAAAGTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATGAGCTGCACAACCGCCCAGTCTTACAGACAAAAAAGTTAGT  200

seq1  TACCTTTCTCTTCCCAGTGGCAATTAAATATCCTAGAAAAACATCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTCTTCCCAGTGGCAATTAAATATCCTAGAAAAACATCTGATT  250

seq1  GGCTCAGACCAAGCAGGTGCCGATGCCCTGAGTCAGTACCTATGGCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGACCAAGCAGGTGCCGATGCCCTGAGTCAGTACCTATGGCTCAA  300

seq1  GGGAGGGCCGTTACAGCAGATGGTCAGTAGCTGCCATTATGCCATAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCCGTTACAGCAGATGGTCAGTAGCTGCCATTATGCCATAGGCT  350

seq1  AGAATTGGGAGATGAAGGTGGATCAGATCTATTGTTTCTAGCTATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGGAGATGAAGGTGGATCAGATCTATTGTTTCTAGCTATATTTT  400

seq1  CATTTTCAAATGAAGGAAGTTATCTCTTTCTATCTTGAGACAGGGCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAAATGAAGGAAGTTATCTCTTTCTATCTTGAGACAGGGCATCA  450

seq1  TCTATTTCAGGTTGGCCTCAAACTCTCTGTGTAGCCAAGGATGGCCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCAGGTTGGCCTCAAACTCTCTGTGTAGCCAAGGATGGCCTTGA  500

seq1  ACTTCTGATTTTTCTGTCTTCCCCTCCCTAGTTCTGGGATTAAAGGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGATTTTTCTGTCTTCCCCTCCCTAGTTCTGGGATTAAAGGCATA  550

seq1  TGGCACTATGTCTGGCTTTTGTAGTGTTGGGGATCGAACCCAGGACCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTATGTCTGGCTTTTGTAGTGTTGGGGATCGAACCCAGGACCTCG  600

seq1  CGGGAGCTCAGTAAGCATGCTACCAACTGAGCCACACCTCCAGCTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCTCAGTAAGCATGCTACCAACTGAGCCACACCTCCAGCTCTTAT  650

seq1  TTACACTTTTAACTTACTGAGATGTAAACTTCTTACGGATCTAGGGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTTAACTTACTGAGATGTAAACTTCTTACGGATCTAGGGAATG  700

seq1  TCAGTGATGAAGTTGCACAGAAAGGGCAGCAGATAGCTGTAACTTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATGAAGTTGCACAGAAAGGGCAGCAGATAGCTGTAACTTTAATG  750

seq1  TCACTTCAGAGAGCCATGTTAGCCCTGTCTTTTATTCATTGAACAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGAGAGCCATGTTAGCCCTGTCTTTTATTCATTGAACAAAATC  800

seq1  TGGTGAATTTCCACTGTGTATCAGGCACTGATTTATTGACAGCTTATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATTTCCACTGTGTATCAGGCACTGATTTATTGACAGCTTATGGC  850

seq1  AATGAAGACACTATTTTTGACTTCTTGGAGCTTGCAGTTTTATAAGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGACACTATTTTTGACTTCTTGGAGCTTGCAGTTTTATAAGGGAA  900

seq1  ACAGGAAAATAATACAAAGAGAGGAGAAAACGTGGGGGAGGTGTGGTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAATAATACAAAGAGAGGAGAAAACGTGGGGGAGGTGTGGTTCA  950

seq1  GATAGGAAAATCAGGGGCAACTAAAGGAGACAGAGTTAACAGTT-GGGAG  999
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  GATAGG-AAATCAGGGGCAACTAAAGGAGACAGAGTTAACAGTTGGGGAG  999

seq1  AATGGGTTGTACTGAAAGCGGGTGGTGGGACCATCTTGTGCAAAAGCCCT  1049
      |||||||||||||| ||||||||||| ||||||||||||||||||||| |
seq2  AATGGGTTGTACTG-AAGCGGGTGGT-GGACCATCTTGTGCAAAAGCCTT  1047

seq1  GAGGTAGCGATGGTTTGGGTGTGTCCTGGGAAATAATCCCAAGACAACAA  1099
      || |||||||||| |||||||||| ||||  |||||||||||||||||||
seq2  GAAGTAGCGATGGGTTGGGTGTGT-CTGG--AATAATCCCAAGACAACAA  1094

seq1  AGCAG  1104
      |||||
seq2  AGCAG  1099

seq1: chr4_127183494_127184656
seq2: B6Ng01-190K12.g_62_1233 (reverse)

seq1  GAGACAGGGT-AGAGGGAG-CAAGAGGAGTCCCATTGACTCCACCTAACT  48
      |||||||| | ||||| || |||||  ||| ||||||||||||||||  |
seq2  GAGACAGGATAAGAGGAAGACAAGATAAGTACCATTGACTCCACCTACTT  50

seq1  TCAA---GCTCTAAGCAACACTGGGTGTTT-AGGGAGGAAAGGATGCTGG  94
      ||||    |||||   |||||||||||||| ||||||||||||||||| |
seq2  TCAAAGGCCTCTAGCAAACACTGGGTGTTTAAGGGAGGAAAGGATGCT-G  99

seq1  CACAAGGTAATCA-GGCTTAAAGTAG-ACAACCTGTTGGCTGTTGAAGCT  142
      ||| |||| |||| |||| ||||||| ||||||||||||||| |||||||
seq2  CAC-AGGT-ATCAGGGCTAAAAGTAGAACAACCTGTTGGCTG-TGAAGCT  146

seq1  CTTT-GGCTATTTGAAATTTTATTTGTCCCC--AAGG-TCTA-CCAGCTA  187
      |||| ||||||| ||||||||||||||||||  |||| |||| |||||||
seq2  CTTTGGGCTATTGGAAATTTTATTTGTCCCCCAAAGGTTCTACCCAGCTA  196

seq1  GTGCCTTATTT-CCATGAAAGTCATCACAGAAATTGTTTTTTTCCCCACC  236
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTG-CTTATTTCCCATGAAAGTCATCACAGAAATTGTTTTTTTCCCCACC  245

seq1  TAATCGGGTCAATTAAATTCAGCTTCCCCCCTCAGAATCCTGGAGAGACT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGGGTCAATTAAATTCAGCTTCCCCCCTCAGAATCCTGGAGAGACT  295

seq1  GGAGGTCAGTGACTTTAAACCCAGCCCTGGCTAATGACTTTGGGACCCCT  336
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGGTCAGTGACTTTAAACCCAGCCCTGGCTAATGACTTTGGAACCCCT  345

seq1  GGACCCTCCAGGCAGCACAAAGGCAATTAGCCAATGTTGGTGACTTTTGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTCCAGGCAGCACAAAGGCAATTAGCCAATGTTGGTGACTTTTGT  395

seq1  TCTGTTTGTGTTGATAAATGGAAACAGATGCAGCATTGGGGTCTGGGGTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGTGTTGATAAATGGAAACAGATGCAGCATTGGGGTCTGGGGTG  445

seq1  GAAGTCAGAGCAGAGTCAATACTTTAGTTTACACTGAAGTGGAAACAATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGAGCAGAGTCAATACTTTAGTTTACACTGAAGTGGAAACAATT  495

seq1  CTTGGCTAGGGTGGAGATGCCCATGGTATCTTCAGACGTCAGGGCGTGTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAGGGTGGAGATGCCCATGGTATCTTCAGACGTCAGGGCGTGTT  545

seq1  CTTTTGCAAGGGTTCTTGATCTCCCCAGAGACAAGGATTCATTTGTCACC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAAGGGTTCTTGATCTCCCCAGAGACAAGGATTCATTTGTCACC  595

seq1  TGGGTTACTCTGACACCTACCGATTGGTCTCTGCCTTTCTTGTCTTTAAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTACTCTGACACCTACCGATTGGTCTCTGCCTTTCTTGTCTTTAAA  645

seq1  GCCCTCCAGAGCACTGTCTCTGGCGCTAGGTGATCAAGATTCCATGCCAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCAGAGCACTGTCTCTGGCGCTAGGTGATCAAGATTCCATGCCAC  695

seq1  ATCTTACAGCCTACGTGTCCATGGCTAAAGCCTTCAGCCTGATAGCCAGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAGCCTACGTGTCCATGGCTAAAGCCTTCAGCCTGATAGCCAGG  745

seq1  CTTAGCCTTTAGTCTCTGTCATCTTCACATGGGCCAGAGCTGACATCCTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTTTAGTCTCTGTCATCTTCACATGGGCCAGAGCTGACATCCTG  795

seq1  CCAGATCTTGTCTGAGACCTTCCGACTATCTTTGTCTTCGTTTGATGTCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTTGTCTGAGACCTTCCGACTATCTTTGTCTTCGTTTGATGTCT  845

seq1  CTGCTCAAGACATCTTCCCGTTTCATCTTTGCTCATGCTTTGAGAGACTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAAGACATCTTCCCGTTTCATCTTTGCTCATGCTTTGAGAGACTT  895

seq1  TGTAGTGTGTTCATTAAGTGTGGGCAGCCCTGGAATCTGACTCTTTGGGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGTTCATTAAGTGTGGGCAGCCCTGGAATCTGACTCTTTGGGG  945

seq1  TTCATGTTCTGCCTCTGTCAGTTACATGAGATAAAATATACACAGCACTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCTGCCTCTGTCAGTTACATGAGATAAAATATACACAGCACTT  995

seq1  AGCTTGGAGCCTGACATAGATAAATGTTTAATAATGTATGTTGTGACAGT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGAGCCTGACATAGATAAATGTTTAATAATGTATGTTGTGACAGT  1045

seq1  ATTACCTCATAGCACTTCCTTTGACTTTCAGCATTCGCCTCTGTTATGAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCATAGCACTTCCTTTGACTTTCAGCATTCGCCTCTGTTATGAA  1095

seq1  ATCTTTCCCGAGTTACAGCAACCTTGTCCTCCCAGACCACCAACTTCCAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCCGAGTTACAGCAACCTTGTCCTCCCAGACCACCAACTTCCAA  1145

seq1  GCAACAACCCCTGCCCCTGGTGAATTC  1163
      |||||||||||||||||||||||||||
seq2  GCAACAACCCCTGCCCCTGGTGAATTC  1172