BAC Information

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BAC

Clone NameB6Ng01-190K21
Chromosome4 (Build37)
Map Location 106,689,574 - 106,877,960
singlet/doubletdoublet
Overlap geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneLOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190K21.bB6Ng01-190K21.g
ACCGA014376GA014377
length1,1661,128
definitionB6Ng01-190K21.b B6Ng01-190K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,689,574 - 106,690,737)(106,876,822 - 106,877,960)
sequence
gaattcctgctgtttctttggttgctggagggggtgggctagatgcacac
atcttcatgttcgataatattgtatgcagctgctggaagatgaggaacag
cctcaggtccgtgctggcagggtcctggggagctcctccctctgggacag
acagatgcagagccccattccttcttcctgtgaaggggttatttttcctg
gtagctagggttgctccaaaaattcagtgaacctctctgaacctcaattg
ctgtaccccatatttggggttgatggtatatccatgactcctgggacctg
tatgaagattctgtgacataatgcctaggaaaccctgcctggtgctgggt
gtctggtgcacactctgtgcctgccagcacttggatggctcctgtgtgcc
ttcaggccactttattctctgagcttcctacctagccaggggtcagggct
gcttttagtgtaattctcttggcagtacagttttcatggcattgctaagg
ttcatagattcttcaaatcagctgatcagcacttaaccctctggttccac
tggcaagagttggtgccagtgaaacaccagccctatttggccttttaatg
aagcagcttcctaatctcctgctgaagtctgtcctcttgacttgttccct
cagctttggccattctgatcccttgttctttggtctagcccccaacagga
gtttctaggggaagtgaaggcagggaagtaggctgtgggttcaggagctt
ctgcttctgttcctagcaggcgtgttcggatgagcttaatggagacctac
tctcagctccagggactgcatggctttctgtcaccagaagatgcctgagc
accttttgagtttcgtttctcccttgcctataaaacagcctacttcatca
gctctgaattgaaccagggagcataagaatggtttgaaattgtataggac
tccttcccaaggcagcagtcaatcatttattcatttggcacagacacagt
gctgctcagcctgctgtagtggccaacacttgttcaggtgccatcctgga
actccatgtcaaggtgctctccccacagctcttaatataaaactccagtt
tctcagttatagcatctgggagcccgtctgggtctgtcccaatcatcctc
acctccatttgataga
gaattctgcaggctccctctacttttctgagtctattgtccctgctgagg
gtaggtaagcctccctccagggagccttggttaccacacctcactgctgg
tcttaccttttcttatgttctttagcttctggccacatcttagtttgctg
aagccagaagagacccactggacataggacagccagcttgagtagaatag
ccctagttttccttctgactaacaagttactatctagggagacaacagca
atctctctaagtctcagttgtctcatcagaagaatggggtaaggacacac
aagttgtgggcaggatggagtaagtctgtcctgcgtgggttctggcacct
tgatctgcatgtatgtttgtctgtataccatgtgtgtgcctggtgcctgc
aaagtccagagatgttcttgagagctggggtgcagtactagacgcatcta
aaataagtaggtaccccaattataggggccccagggcctgaaggagctgc
atttagttgtctagaacaggcccatctcagcatttattgctccctcaggt
actctccacagctctggaattacaacactttacccccaccctctccccac
ccctcagattgcactgtcaagatggagagggtctggtccatctgctttcc
ttataggggtgttaggaggattcttcagccaccaaaatagctaagctgag
aagacagatcctgtgagatacacgacttctaataggggtgtgaacaaaca
aaccctactgtgaattatctaatcagatacttgcttcattcagatgttgc
aagtctgagttatcagaatacatacagccaaacagtatgaactttagagg
catggtaccccaggaaagtgacatggtgcttttcagaaagcatcacctcg
ccgggcggtggcgcacgcctttaatcctagcactcgggaggcagaggcag
gcggatttcctgagttcgagggcagctgtctacaaagtgagtttccagga
cagacagggctatacagagaaaccctgttctcgaaaacaaaacaaacaaa
caaaaataccagaagcatacgtgagctcgattgaatcttttctttccagt
caacttctttctaacccaagtctcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_106689574_106690737
seq2: B6Ng01-190K21.b_45_1210

seq1  GAATTCCTGCTGTTTCTTTGGTTGCTGGAGGGGGTGGGCTAGATGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTGTTTCTTTGGTTGCTGGAGGGGGTGGGCTAGATGCACAC  50

seq1  ATCTTCATGTTCGATAATATTGTATGCAGCTGCTGGAAGATGAGGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGTTCGATAATATTGTATGCAGCTGCTGGAAGATGAGGAACAG  100

seq1  CCTCAGGTCCGTGCTGGCAGGGTCCTGGGGAGCTCCTCCCTCTGGGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTCCGTGCTGGCAGGGTCCTGGGGAGCTCCTCCCTCTGGGACAG  150

seq1  ACAGATGCAGAGCCCCATTCCTTCTTCCTGTGAAGGGGTTATTTTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCAGAGCCCCATTCCTTCTTCCTGTGAAGGGGTTATTTTTCCTG  200

seq1  GTAGCTAGGGTTGCTCCAAAAATTCAGTGAACCTCTCTGAACCTCAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGGGTTGCTCCAAAAATTCAGTGAACCTCTCTGAACCTCAATTG  250

seq1  CTGTACCCCATATTTGGGGTTGATGGTATATCCATGACTCCTGGGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCCATATTTGGGGTTGATGGTATATCCATGACTCCTGGGACCTG  300

seq1  TATGAAGATTCTGTGACATAATGCCTAGGAAACCCTGCCTGGTGCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGATTCTGTGACATAATGCCTAGGAAACCCTGCCTGGTGCTGGGT  350

seq1  GTCTGGTGCACACTCTGTGCCTGCCAGCACTTGGATGGCTCCTGTGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGCACACTCTGTGCCTGCCAGCACTTGGATGGCTCCTGTGTGCC  400

seq1  TTCAGGCCACTTTATTCTCTGAGCTTCCTACCTAGCCAGGGGTCAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCACTTTATTCTCTGAGCTTCCTACCTAGCCAGGGGTCAGGGCT  450

seq1  GCTTTTAGTGTAATTCTCTTGGCAGTACAGTTTTCATGGCATTGCTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGTGTAATTCTCTTGGCAGTACAGTTTTCATGGCATTGCTAAGG  500

seq1  TTCATAGATTCTTCAAATCAGCTGATCAGCACTTAACCCTCTGGTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGATTCTTCAAATCAGCTGATCAGCACTTAACCCTCTGGTTCCAC  550

seq1  TGGCAAGAGTTGGTGCCAGTGAAACACCAGCCCTATTTGGCCTTTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAGTTGGTGCCAGTGAAACACCAGCCCTATTTGGCCTTTTAATG  600

seq1  AAGCAGCTTCCTAATCTCCTGCTGAAGTCTGTCCTCTTGACTTGTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTTCCTAATCTCCTGCTGAAGTCTGTCCTCTTGACTTGTTCCCT  650

seq1  CAGCTTTGGCCATTCTGATCCCTTGTTCTTTGGTCTAGCCCCCAACAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGGCCATTCTGATCCCTTGTTCTTTGGTCTAGCCCCCAACAGGA  700

seq1  GTTTCTAGGGGAAGTGAAGGCAGGGAAGTAGGCTGTGGGTTCAGGAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGGGGAAGTGAAGGCAGGGAAGTAGGCTGTGGGTTCAGGAGCTT  750

seq1  CTGCTTCTGTTCCTAGCAGGCGTGTTCGGATGAGCTTAATGGAGACCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTTCCTAGCAGGCGTGTTCGGATGAGCTTAATGGAGACCTAC  800

seq1  TCTCAGGCTCCAGGGACTGCATGGCTTTCTGTCACCAGAAGATGCCTGAG  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCA-GCTCCAGGGACTGCATGGCTTTCTGTCACCAGAAGATGCCTGAG  849

seq1  CACCTTTTGAGTTTCGTTTCTCCCTTGCCTATAAAACAGCCTACTTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTGAGTTTCGTTTCTCCCTTGCCTATAAAACAGCCTACTTCATC  899

seq1  AGCTCTGAATTGAACCAGGGAGCATAAGAATGGTTTGAAATTGTATAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGAATTGAACCAGGGAGCATAAGAATGGTTTGAAATTGTATAGGA  949

seq1  CTCCTTCCCAAGGCCAGCAGTCAATCATTTATTCATTTGGCACAGACACA  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCCAAGG-CAGCAGTCAATCATTTATTCATTTGGCACAGACACA  998

seq1  GTTGCTGCTTCAGCCTGGCTGTAGTGGCC-ACACTTG-TCAGGTGCCATC  1048
      | |||||| ||||||| |||||||||||| ||||||| ||||||||||||
seq2  G-TGCTGC-TCAGCCT-GCTGTAGTGGCCAACACTTGTTCAGGTGCCATC  1045

seq1  CTGGACCTCCATGTCAA-GTGCTCT-CCCACAGCTCTTAATTATAAAACT  1096
      ||||| ||||||||||| ||||||| |||||||||||||| |||||||||
seq2  CTGGAACTCCATGTCAAGGTGCTCTCCCCACAGCTCTTAA-TATAAAACT  1094

seq1  CCAGTTTCTCAG-TATAGCATCT-GGAGCCCTGTCT-GGTCTGTCCCCAT  1143
      |||||||||||| |||||||||| ||||||| |||| |||||||||| ||
seq2  CCAGTTTCTCAGTTATAGCATCTGGGAGCCC-GTCTGGGTCTGTCCCAAT  1143

seq1  CATCCTCA-CTCCA-TTGATAGA  1164
      |||||||| ||||| ||||||||
seq2  CATCCTCACCTCCATTTGATAGA  1166

seq1: chr4_106876822_106877960
seq2: B6Ng01-190K21.g_70_1197 (reverse)

seq1  CATTGAGGACTTGGG-TAGAAAGGAGTCTGACTGGAAAAGAAAGATTTCA  49
      |||||| |||||||| ||||||| ||| ||||||||||  ||||| ||||
seq2  CATTGA-GACTTGGGTTAGAAAGAAGT-TGACTGGAAAGAAAAGA-TTCA  47

seq1  ACCGAAGCTCACGGTAATGCTTTCTGGGTTTTTTTGTTTGTTTGGTTTTT  99
      | || ||||||||   |||| |||| ||| ||||||||||||||   |||
seq2  ATCG-AGCTCACG--TATGC-TTCT-GGTATTTTTGTTTGTTTG---TTT  89

seq1  TGGTTTTTCGAG-ACAGGGTTTCTCTGTATAGCCCTGTCTGTCCTGG-AA  147
      ||  |||||||| |||||||||||||||||||||||||||||||||| ||
seq2  TG--TTTTCGAGAACAGGGTTTCTCTGTATAGCCCTGTCTGTCCTGGAAA  137

seq1  CTCACTTTGTAGACCAGGCTGCCCTCGAACTCA-GAAATCCGCCTGCCTC  196
      ||||||||||||||   |||||||||||||||| ||||||||||||||||
seq2  CTCACTTTGTAGAC--AGCTGCCCTCGAACTCAGGAAATCCGCCTGCCTC  185

seq1  TGCCTCCCGAGTGCTAGGATTAAAGGCGTGCGCCACCGCCCGGCGAGGTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGAGTGCTAGGATTAAAGGCGTGCGCCACCGCCCGGCGAGGTG  235

seq1  ATGCTTTCTGAAAAGCACCATGTCACTTTCCTGGGGTACCATGCCTCTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTGAAAAGCACCATGTCACTTTCCTGGGGTACCATGCCTCTAA  285

seq1  AGTTCATACTGTTTGGCTGTATGTATTCTGATAACTCAGACTTGCAACAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATACTGTTTGGCTGTATGTATTCTGATAACTCAGACTTGCAACAT  335

seq1  CTGAATGAAGCAAGTATCTGATTAGATAATTCACAGTAGGGTTTGTTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAAGCAAGTATCTGATTAGATAATTCACAGTAGGGTTTGTTTGT  385

seq1  TCACACCCCTATTAGAAGTCGTGTATCTCACAGGATCTGTCTTCTCAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCCTATTAGAAGTCGTGTATCTCACAGGATCTGTCTTCTCAGCT  435

seq1  TAGCTATTTTGGTGGCTGAAGAATCCTCCTAACACCCCTATAAGGAAAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTTTGGTGGCTGAAGAATCCTCCTAACACCCCTATAAGGAAAGC  485

seq1  AGATGGACCAGACCCTCTCCATCTTGACAGTGCAATCTGAGGGGTGGGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACCAGACCCTCTCCATCTTGACAGTGCAATCTGAGGGGTGGGGA  535

seq1  GAGGGTGGGGGTAAAGTGTTGTAATTCCAGAGCTGTGGAGAGTACCTGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGGGTAAAGTGTTGTAATTCCAGAGCTGTGGAGAGTACCTGAG  585

seq1  GGAGCAATAAATGCTGAGATGGGCCTGTTCTAGACAACTAAATGCAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATAAATGCTGAGATGGGCCTGTTCTAGACAACTAAATGCAGCTC  635

seq1  CTTCAGGCCCTGGGGCCCCTATAATTGGGGTACCTACTTATTTTAGATGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCCCTGGGGCCCCTATAATTGGGGTACCTACTTATTTTAGATGC  685

seq1  GTCTAGTACTGCACCCCAGCTCTCAAGAACATCTCTGGACTTTGCAGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTACTGCACCCCAGCTCTCAAGAACATCTCTGGACTTTGCAGGCA  735

seq1  CCAGGCACACACATGGTATACAGACAAACATACATGCAGATCAAGGTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACACACATGGTATACAGACAAACATACATGCAGATCAAGGTGCC  785

seq1  AGAACCCACGCAGGACAGACTTACTCCATCCTGCCCACAACTTGTGTGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACGCAGGACAGACTTACTCCATCCTGCCCACAACTTGTGTGTC  835

seq1  CTTACCCCATTCTTCTGATGAGACAACTGAGACTTAGAGAGATTGCTGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCCATTCTTCTGATGAGACAACTGAGACTTAGAGAGATTGCTGTT  885

seq1  GTCTCCCTAGATAGTAACTTGTTAGTCAGAAGGAAAACTAGGGCTATTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTAGATAGTAACTTGTTAGTCAGAAGGAAAACTAGGGCTATTCT  935

seq1  ACTCAAGCTGGCTGTCCTATGTCCAGTGGGTCTCTTCTGGCTTCAGCAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCTGGCTGTCCTATGTCCAGTGGGTCTCTTCTGGCTTCAGCAAA  985

seq1  CTAAGATGTGGCCAGAAGCTAAAGAACATAAGAAAAGGTAAGACCAGCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGTGGCCAGAAGCTAAAGAACATAAGAAAAGGTAAGACCAGCAG  1035

seq1  TGAGGTGTGGTAACCAAGGCTCCCTGGAGGGAGGCTTACCTACCCTCAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTGGTAACCAAGGCTCCCTGGAGGGAGGCTTACCTACCCTCAGC  1085

seq1  AGGGACAATAGACTCAGAAAAGTAGAGGGAGCCTGCAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAATAGACTCAGAAAAGTAGAGGGAGCCTGCAGAATTC  1128