BAC Information

Click to search

BAC

Clone NameB6Ng01-191J05
Chromosome4 (Build37)
Map Location 143,372,144 - 143,373,357
singlet/doubletsinglet
Overlap genenone
Upstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666
Downstream geneOTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191J05.bB6Ng01-191J05.g
ACCGA015031GA015032
length1,2081,190
definitionB6Ng01-191J05.b B6Ng01-191J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatgggtgagcagtagtccattgtgtaaatgtata
acattttctgtatccattcctctgttgagggacatctggctttttccagg
cttctttctattataaataagactactatgaacatagttgagcatgtgtc
cttgttacaagttggagcatcttctgagtatatgcccagaaggggtattg
ctggatcttccagtagaactatgtccaattttctgaggaaccaccaaaat
gatttccagagtgtttgtacccacttgcaatgccaccagcaagagtgtta
ctctttttccacatcttcaccagcatctgctgtcagttgagtttttgatc
ttagacattctgactggtgtgaggtggaatctcagtgttgtcttgatttg
catttccctgatgattaagggtgttgaaaattttcttcaggtgtttctca
gccattccgtattcttcaggtgagaattctttgtttcgttctgttcccca
tttttttaatagggttatttatttattttcggagtccaatttcctaagtt
ctttatatatattggctattatccccctatgggatttaggactggttaag
aacttttcccaatttgttcattgcctttttgtctaattgacagtatcctt
tgccttactgatgctttgcaattttatgaggtcccatttgtcgatccttg
atcttacagcacaagccatttctgttgtgttcagaaatttttcccctgtg
cccatatcttcaaggctcttacctactttctcttctataagtttcagtgt
ctttgattttatgtggagttccttaatccacttagacttaagatttgtac
acggagataagaatggatcaatttcacattcttatacatgctaaccaccg
agttgagtcagtgccatttgttgaaaatgctgtcttctttccactgaatg
ggttttaagctcctttgtacaagaatcaagtgaccagagtgtatgggttc
attttttgggcccttcaattcaatccattggatcttactttttctatcac
ttacaagtacctatgctgtttttatcagtaattactcttgaagctcagta
ggtcccgggatggtagtctaaccgaggttctcgactgtagaaacacagtt
tgcatcaagctttgttatccgtatgtattccaatcgtctcttcacatctc
gttggtac
gaattcttggtagcaccaccaagagcctcatttggggggaaagtgaacag
aagtgtctgaatgaagtgagcaactcaccagatgggacaaagagctttct
atgcaaaccaggccaagtatgactttaagctcccagacagagtcttctct
ggctctgttttaacacctcactactcaggcctccccttcacatctgtgac
tctaaatgcaaactgctactagctgattagacatttgagtgtcacccagc
aatcctcttaaggaggtttgtttttccttgtattaagtaatttaaaggga
aactaaacttcaagggtaaaatgcaaacgaatgtcaaaacgtttgggaaa
tcaggccacaaacactgacacttcccagtgagtgagtactgccttaggcc
ttagggaagaaaaatacagaacaaaggatttagtctatttacctagactg
aagaggaaaaccaaaccaaaccaactaaacctaaaccaataaacactgga
catgctggtactggcctgcaatcctaacaattgggatttaaaagctagag
gaatagaattttaaggacagcctgagctatatagtgagaggccagcctgt
gttacatgagaccctgtatcaaatacagagccaagtatatgtcttagcag
gtaaagacactttattctaagcatgatttctgaagttggactcacatggt
gaaaaaattaaattaaattaaaaaatatcacacacacaaaaacactcaca
cacccaatcacaccaaaacaacaacaactacacaaaaacaacaacaacaa
caacaacagaaacacaaacccaaccacttctcttaaatagaaataaagga
ctgaaaaaattgcttagtggttaaaagtacatattgctcctccaaaagga
cccagattaaattttctaccactcacatggctgctcacaaatttccctaa
ctctacttctagaagaattgattctcacttctgcagaaacaaatattatc
atatagacatacatagatgcagcaaagcatattacaaagagagtatctat
atatatatatatatacaggacacaacgtcagtatattctttgacaaacaa
gctaaaatatggcatgagaaactttctgtcagacagccatgtctttcaag
tctcctcacagaaaacaccttggtagcccagttttacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143372144_143373357
seq2: B6Ng01-191J05.g_66_1255

seq1  GAATTCTTGGTAGCACCACCAAGAGCCTCATTTGGGGGGAAAGTGAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTAGCACCACCAAGAGCCTCATTTGGGGGGAAAGTGAACAG  50

seq1  AAGTGTCTGAATGAAGTGAGCAACTCACCAGATGGGACAAAGAGCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTGAATGAAGTGAGCAACTCACCAGATGGGACAAAGAGCTTTCT  100

seq1  ATGCAAACCAGGCCAAGTATGACTTTAAGCTCCCAGACAGAGTCTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACCAGGCCAAGTATGACTTTAAGCTCCCAGACAGAGTCTTCTCT  150

seq1  GGCTCTGTTTTAACACCTCACTACTCAGGCCTCCCCTTCACATCTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTTTTAACACCTCACTACTCAGGCCTCCCCTTCACATCTGTGAC  200

seq1  TCTAAATGCAAACTGCTACTAGCTGATTAGACATTTGAGTGTCACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGCAAACTGCTACTAGCTGATTAGACATTTGAGTGTCACCCAGC  250

seq1  AATCCTCTTAAGGAGGTTTGTTTTTCCTTGTATTAAGTAATTTAAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTAAGGAGGTTTGTTTTTCCTTGTATTAAGTAATTTAAAGGGA  300

seq1  AACTAAACTTCAAGGGTAAAATGCAAACGAATGTCAAAACGTTTGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACTTCAAGGGTAAAATGCAAACGAATGTCAAAACGTTTGGGAAA  350

seq1  TCAGGCCACAAACACTGACACTTCCCAGTGAGTGAGTACTGCCTTAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCACAAACACTGACACTTCCCAGTGAGTGAGTACTGCCTTAGGCC  400

seq1  TTAGGGAAGAAAAATACAGAACAAAGGATTTAGTCTATTTACCTAGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAGAAAAATACAGAACAAAGGATTTAGTCTATTTACCTAGACTG  450

seq1  AAGAGGAAAACCAAACCAAACCAACTAAACCTAAACCAATAAACACTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAACCAAACCAAACCAACTAAACCTAAACCAATAAACACTGGA  500

seq1  CATGCTGGTACTGGCCTGCAATCCTAACAATTGGGATTTAAAAGCTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTACTGGCCTGCAATCCTAACAATTGGGATTTAAAAGCTAGAG  550

seq1  GAATAGAATTTTAAGGACAGCCTGAGCTATATAGTGAGAGGCCAGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAATTTTAAGGACAGCCTGAGCTATATAGTGAGAGGCCAGCCTGT  600

seq1  GTTACATGAGACCCTGTATCAAATACAGAGCCAAGTATATGTCTTAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGAGACCCTGTATCAAATACAGAGCCAAGTATATGTCTTAGCAG  650

seq1  GTAAAGACACTTTATTCTAAGCATGATTTCTGAAGTTGGACTCACATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACACTTTATTCTAAGCATGATTTCTGAAGTTGGACTCACATGGT  700

seq1  GAAAAAATTAAATTAAATTAAAAAATATCACACACACAAAAACACTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTAAATTAAATTAAAAAATATCACACACACAAAAACACTCACA  750

seq1  CACCCAATCACACCAAAACAACAACAACTACAACAAAAACAACAACAACA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCCAATCACACCAAAACAACAACAACTAC-ACAAAAACAACAACAACA  799

seq1  ACAACAACAGAAACACAAACCCAACCACTTCTCTTAAATAGAAAT-AAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAACAACAGAAACACAAACCCAACCACTTCTCTTAAATAGAAATAAAGG  849

seq1  ACTGAAAAAATTGCTTAGTGGTTAAAAGTACATATTGCTCCTCCAAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAATTGCTTAGTGGTTAAAAGTACATATTGCTCCTCCAAAAGG  899

seq1  ACCCAGATTAAA-TTTCTACCACTCACATGGCTGCTCACAAATTTCCCTA  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATTAAATTTTCTACCACTCACATGGCTGCTCACAAATTTCCCTA  949

seq1  ACTCTACTTCTAAGAGAATTGATTCTCACTTCTGCAGAAACAAATA-TAT  997
      ||||||||||||  |||||||||||||||||||||||||||||||| |||
seq2  ACTCTACTTCTAGAAGAATTGATTCTCACTTCTGCAGAAACAAATATTAT  999

seq1  CATATAGACATACATAGATGCAGCCAAAGCATATACAAAAGAGAAATAAA  1047
      ||||||||||||||||||||||| ||||||||||   |||||||     |
seq2  CATATAGACATACATAGATGCAG-CAAAGCATATTACAAAGAGA---GTA  1045

seq1  TCTAAATAATAATAATAATAATAATAATAACAAGACCACAAACCGTTCAG  1097
      |||| ||          |||   |||   ||| || |||||  || ||||
seq2  TCTATAT----------ATATATATATATACAGGA-CACAA--CG-TCAG  1081

seq1  TATTATTCTTTGACAACAAAAGGCTAAAAATATGCCATTGAGAAACATTT  1147
      || ||||||||||||  || | ||| |||||||| || |||||||| |||
seq2  TA-TATTCTTTGACA--AACAAGCT-AAAATATGGCA-TGAGAAAC-TTT  1125

seq1  CTGTGAAGACAGCCATGTC-TTCATGTCTTCACTCCACAGAAAACCACCT  1196
      ||||  ||||||||||||| |||| ||||   |  ||||||||| |||||
seq2  CTGT-CAGACAGCCATGTCTTTCAAGTCT---CCTCACAGAAAA-CACCT  1170

seq1  T-GTAG-CCAATGTTACCTG  1214
      | |||| ||| | |||||||
seq2  TGGTAGCCCAGTTTTACCTG  1190