BAC Information

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BAC

Clone NameB6Ng01-192G21
Chromosome4 (Build37)
Map Location 107,403,592 - 107,506,762
singlet/doubletdoublet
Overlap geneLOC433743, 4933424M12Rik, 4930430J20Rik
Upstream geneBC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889
Downstream geneMagoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192G21.bB6Ng01-192G21.g
ACCGA015672GA015673
length1,1311,143
definitionB6Ng01-192G21.b B6Ng01-192G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,505,633 - 107,506,762)(107,403,592 - 107,404,737)
sequence
gaattccctcttactataaagagcagaagggctgaaagatagcaggaagc
taatgtgtgaggatgtgcaatcgggccccggcgcatggcaggtgcttgcc
gtcagtacagctattgctgtttgtctggggagtaattagaagggaaagaa
atgggctgttgtgtgcccatgcaagctgagattgcatgactcatagcgga
gcaggggtaagaacatgaatactatgtccagccccaaactatttgctgcc
ccgtgtgcctagttctgaaaggaactggatgtaagggtcagggtggagaa
gttggccacgcccccttattatttctctgtgttgtcccggtgcctggcac
tgattataaatatgatcagacaagggcagaacaaggcagctgtcccaaca
gggaacctgcaggtgagcatggcggcctgcccaccctgggaagtgtggag
tagaggttcaggacttggcttttggcttcttgcgcccttcatgtactcca
gggactcctcaacatcacctgcattcagctcccatgagccctaccctagg
actgagagcccaggaacaggggcaagaaggcaggagccctgaacagggag
ctagcaggcctggatgtgcattttggctgttctgctttgccatgtactct
caaggaagacactttccctcccaggtctttggtcttcctagggaaaggga
aggggatttggtaagacacaatcgtttgggcatggtagacagtcacaggc
caagaggccccagaactggcagagagaggccaagagggtcctcagagccc
aggccctgggtgtcctctccctgagtgacagtggaactagatgtgatatt
ggggccatctggatacgacccctctctagcagctagaaagtcttcctcct
cttcctcccctttccagcttcccaaatggccccaccatgactactgtggt
ccctacgtactattatagtccccctctgccaagtctgtcatctgaaatcc
ttacacctgcttttcccttacaagcttggaatgttctttcccatcacctt
ccagttcctgtcggggcctccccttgagctgcccaattcttctcaacggc
cttccttacagcttgccaactttgtcacaga
gaattcaatttgacatctatacagctgtgtgacttggggctgatcccttg
atctctctgatatttaatttccccattttttttaaagcaaaaaaagaaag
agaggaagaaagttaaatgtttctgctctcccaggcagctcctctcagca
gcaggcagccctgaaagaccagctctcctcacaggagacagcaaaggctt
agcaaccgaattgaagcacagaaacctcacaaccgggaaagggagcctcc
gttcatgaccactgctactctctgtgcagctgcgcagtgccagccgatac
cacacatcatatgggtggccaggcacggccaactgagcctggggagccac
agatggaccaggatggaagtgtctggaactgaggcattgaagggaaggat
gcctggcagagggtagcctgcggaaggggtacaggcagaggttcccccca
gacaacgtcacttggatccaggctaaggattctgctccgaattctggcct
tccaaggggtggagaaaccctaagctcagtgtgcagagaaatgcccgagc
cagactgtctcaatgcaacattgaggtcacccaaagaggcagttcagagg
ctcagggtgacctccccctgcagccttggggacaccggagcatgggtggc
tatagcaaatgcaacttcccaggaggcttgagcagcaaagatgtgtttcc
tcacagcgtctggggaggggcccgtttcccgccacccccaccccccaggc
ctctcctctggacttgtgggtggccatcttgcctgtgtttttgtacttcc
ttctgtgtcccaggctccttctcttataagaaaccagtctccctggactt
aggcaacaacagtgcttacccacagtgaacagaaagcttctgatggtgaa
gaaccagcctgctttcatcttagacttaaagccatcttaccggaaagaac
aaactaggtttgttcctaattatgattaattctgttttcaaggactgcta
tgccctaactataatcttacttacaaatggtctgtactgagtgttccaga
atgacatcagaaccttgttaaaagctgtttataagtcatcttttacctta
ctttgtttcaaaattgttataagacactgtgacatatcttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107505633_107506762
seq2: B6Ng01-192G21.b_44_1174 (reverse)

seq1  TCTGTGACAAGTTTGCCAAGCTGTA--GAAGACCGTTGAGAGGATTGTGG  48
      ||||||||||  ||| |||||||||  |||| ||||||||| || |  ||
seq2  TCTGTGACAAAGTTGGCAAGCTGTAAGGAAGGCCGTTGAGAAGAATTGGG  50

seq1  CAGCTC-AGGGGAGGCCCCCGACAGAGACTGG-AGGTGATGGGAAAGAAC  96
      |||||| |||||||| |||||||||  ||||| |||||||||||||||||
seq2  CAGCTCAAGGGGAGG-CCCCGACAGGAACTGGAAGGTGATGGGAAAGAAC  99

seq1  A-TCCAAGCTTGTAAGGGAAAAGCA-GTGTAAGGATTTTCAGATGACAGA  144
      | ||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  ATTCCAAGCTTGTAAGGGAAAAGCAGGTGTAAGGA-TTTCAGATGACAGA  148

seq1  CTTGGCAGAGGGGGACTATTAATAGTACGTAGGGACCAACAGTAGTCATG  194
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CTTGGCAGAGGGGGACTA-TAATAGTACGTAGGGACC-ACAGTAGTCATG  196

seq1  GTGGGGCCATTTGGGAAGCTGGAAAGGGGAGGAAGAGGAGGAAGACTTTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCATTTGGGAAGCTGGAAAGGGGAGGAAGAGGAGGAAGACTTTC  246

seq1  TAGCTGCTAGAGAGGGGTCGTATCCAGATGGCCCCAATATCACATCTAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTAGAGAGGGGTCGTATCCAGATGGCCCCAATATCACATCTAGT  296

seq1  TCCACTGTCACTCAGGGAGAGGACACCCAGGGCCTGGGCTCCTGAGGACC  344
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCACTGTCACTCAGGGAGAGGACACCCAGGGCCTGGGCT-CTGAGGACC  345

seq1  CTCTTGGCCTCTCTCTGCCAGTTCTGGGGCCTCTTGGCCTGTGACTGTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCCTCTCTCTGCCAGTTCTGGGGCCTCTTGGCCTGTGACTGTCT  395

seq1  ACCATGCCCAAACGATTGTGTCTTACCAAATCCCCTTCCCTTTCCCTAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCCAAACGATTGTGTCTTACCAAATCCCCTTCCCTTTCCCTAGG  445

seq1  AAGACCAAAGACCTGGGAGGGAAAGTGTCTTCCTTGAGAGTACATGGCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAAGACCTGGGAGGGAAAGTGTCTTCCTTGAGAGTACATGGCAA  495

seq1  AGCAGAACAGCCAAAATGCACATCCAGGCCTGCTAGCTCCCTGTTCAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAGCCAAAATGCACATCCAGGCCTGCTAGCTCCCTGTTCAGGG  545

seq1  CTCCTGCCTTCTTGCCCCTGTTCCTGGGCTCTCAGTCCTAGGGTAGGGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTTCTTGCCCCTGTTCCTGGGCTCTCAGTCCTAGGGTAGGGCT  595

seq1  CATGGGAGCTGAATGCAGGTGATGTTGAGGAGTCCCTGGAGTACATGAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGCTGAATGCAGGTGATGTTGAGGAGTCCCTGGAGTACATGAAG  645

seq1  GGCGCAAGAAGCCAAAAGCCAAGTCCTGAACCTCTACTCCACACTTCCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCAAGAAGCCAAAAGCCAAGTCCTGAACCTCTACTCCACACTTCCCA  695

seq1  GGGTGGGCAGGCCGCCATGCTCACCTGCAGGTTCCCTGTTGGGACAGCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCAGGCCGCCATGCTCACCTGCAGGTTCCCTGTTGGGACAGCTG  745

seq1  CCTTGTTCTGCCCTTGTCTGATCATATTTATAATCAGTGCCAGGCACCGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTGCCCTTGTCTGATCATATTTATAATCAGTGCCAGGCACCGG  795

seq1  GACAACACAGAGAAATAATAAGGGGGCGTGGCCAACTTCTCCACCCTGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACACAGAGAAATAATAAGGGGGCGTGGCCAACTTCTCCACCCTGAC  845

seq1  CCTTACATCCAGTTCCTTTCAGAACTAGGCACACGGGGCAGCAAATAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATCCAGTTCCTTTCAGAACTAGGCACACGGGGCAGCAAATAGTT  895

seq1  TGGGGCTGGACATAGTATTCATGTTCTTACCCCTGCTCCGCTATGAGTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGACATAGTATTCATGTTCTTACCCCTGCTCCGCTATGAGTCA  945

seq1  TGCAATCTCAGCTTGCATGGGCACACAACAGCCCATTTCTTTCCCTTCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCTCAGCTTGCATGGGCACACAACAGCCCATTTCTTTCCCTTCTA  995

seq1  ATTACTCCCCAGACAAACAGCAATAGCTGTACTGACGGCAAGCACCTGCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCCCAGACAAACAGCAATAGCTGTACTGACGGCAAGCACCTGCC  1045

seq1  ATGCGCCGGGGCCCGATTGCACATCCTCACACATTAGCTTCCTGCTATCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCGGGGCCCGATTGCACATCCTCACACATTAGCTTCCTGCTATCT  1095

seq1  TTCAGCCCTTCTGCTCTTTATAGTAAGAGGGAATTC  1130
      ||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCTTCTGCTCTTTATAGTAAGAGGGAATTC  1131

seq1: chr4_107403592_107404737
seq2: B6Ng01-192G21.g_65_1207

seq1  GAATTCAATTTGACATCTATACAGCTGTGTGACTTGGGGCTGATCCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTGACATCTATACAGCTGTGTGACTTGGGGCTGATCCCTTG  50

seq1  ATCTCTCTGATATTTAATTTCCCCATTTTTTTTAAAGCAAAAAAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGATATTTAATTTCCCCATTTTTTTTAAAGCAAAAAAAGAAAG  100

seq1  AGAGGAAGAAAGTTAAATGTTTCTGCTCTCCCAGGCAGCTCCTCTCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAAAGTTAAATGTTTCTGCTCTCCCAGGCAGCTCCTCTCAGCA  150

seq1  GCAGGCAGCCCTGAAAGACCAGCTCTCCTCACAGGAGACAGCAAAGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCCCTGAAAGACCAGCTCTCCTCACAGGAGACAGCAAAGGCTT  200

seq1  AGCAACCGAATTGAAGCACAGAAACCTCACAACCGGGAAAGGGAGCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGAATTGAAGCACAGAAACCTCACAACCGGGAAAGGGAGCCTCC  250

seq1  GTTCATGACCACTGCTACTCTCTGTGCAGCTGCGCAGTGCCAGCCGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGACCACTGCTACTCTCTGTGCAGCTGCGCAGTGCCAGCCGATAC  300

seq1  CACACATCATATGGGTGGCCAGGCACGGCCAACTGAGCCTGGGGAGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCATATGGGTGGCCAGGCACGGCCAACTGAGCCTGGGGAGCCAC  350

seq1  AGATGGACCAGGATGGAAGTGTCTGGAACTGAGGCATTGAAGGGAAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACCAGGATGGAAGTGTCTGGAACTGAGGCATTGAAGGGAAGGAT  400

seq1  GCCTGGCAGAGGGTAGCCTGCGGAAGGGGTACAGGCAGAGGTTCCCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCAGAGGGTAGCCTGCGGAAGGGGTACAGGCAGAGGTTCCCCCCA  450

seq1  GACAACGTCACTTGGATCCAGGCTAAGGATTCTGCTCCGAATTCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACGTCACTTGGATCCAGGCTAAGGATTCTGCTCCGAATTCTGGCCT  500

seq1  TCCAAGGGGTGGAGAAACCCTAAGCTCAGTGTGCAGAGAAATGCCCGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGGTGGAGAAACCCTAAGCTCAGTGTGCAGAGAAATGCCCGAGC  550

seq1  CAGACTGTCTCAATGCAACATTGAGGTCACCCAAAGAGGCAGTTCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTCTCAATGCAACATTGAGGTCACCCAAAGAGGCAGTTCAGAGG  600

seq1  CTCAGGGTGACCTCCCCCTGCAGCCTTGGGGACACCGGAGCATGGGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTGACCTCCCCCTGCAGCCTTGGGGACACCGGAGCATGGGTGGC  650

seq1  TATAGCAAATGCAACTTCCCAGGAGGCTTGAGCAGCAAAGATGTGTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAATGCAACTTCCCAGGAGGCTTGAGCAGCAAAGATGTGTTTCC  700

seq1  TCACAGCGTCTGGGGAGGGGCCCGTTTCCCGCCACCCCCACCCCCCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCGTCTGGGGAGGGGCCCGTTTCCCGCCACCCCCACCCCCCAGGC  750

seq1  CTCTCCTCTGGACTTGTGGGTGGCCATCTTGCCTGTGTTTTTGTACTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGGACTTGTGGGTGGCCATCTTGCCTGTGTTTTTGTACTTCC  800

seq1  TTCTGTGTCCCAGGCTCCTTCTCTTATAAGAAACCAGTCTCCCTGGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCCCAGGCTCCTTCTCTTATAAGAAACCAGTCTCCCTGGACTT  850

seq1  AGGCAACAACAGTGCTTACCCACAGTG-ACAGAAAGC-TCTGATGGTGAA  898
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  AGGCAACAACAGTGCTTACCCACAGTGAACAGAAAGCTTCTGATGGTGAA  900

seq1  GAACCAGCCTGCTTTCATCTTAGACTTAAAGCCATCTTACCGGAAAG-AC  947
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAACCAGCCTGCTTTCATCTTAGACTTAAAGCCATCTTACCGGAAAGAAC  950

seq1  AAACTAGGTTTGTTCCTAATTATGATTAAATCTGTTTCCAAGGACTGCTA  997
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AAACTAGGTTTGTTCCTAATTATGATTAATTCTGTTTTCAAGGACTGCTA  1000

seq1  TGCCCTACCTATAATCTTACTTACAAATGGTCCTGTACTGAGTGTTCCAG  1047
      ||||||| ||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGCCCTAACTATAATCTTACTTACAAATGGT-CTGTACTGAGTGTTCCA-  1048

seq1  GAATGACAATCAGACCTTTGTTTAAAAAGCTGTTTAT-AGTCATCTTGTA  1096
      ||||||| |||||| | |||||  ||||||||||||| ||||||||| ||
seq2  GAATGAC-ATCAGAACCTTGTT--AAAAGCTGTTTATAAGTCATCTTTTA  1095

seq1  ACCCTACCTTTGTTTCAAAA-TGTTATAAGACCACCTGTGAC-TATCTTA  1144
        |||  ||||||||||||| |||||||||||   ||||||| |||||||
seq2  --CCTTACTTTGTTTCAAAATTGTTATAAGAC--ACTGTGACATATCTTA  1141

seq1  TA  1146
      ||
seq2  TA  1143