BAC Information

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BAC

Clone NameB6Ng01-192J24
Chromosome4 (Build37)
Map Location 128,720,171 - 128,859,017
singlet/doubletdoublet
Overlap geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2
Downstream geneYars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192J24.bB6Ng01-192J24.g
ACCGA015818GA015819
length800888
definitionB6Ng01-192J24.b B6Ng01-192J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,858,226 - 128,859,017)(128,720,171 - 128,721,051)
sequence
gaattccagttgtgtccagttcatcaaacagagtaagtacattttttcaa
gacatagtagaaaggaagttattttcattcagaaagaattcctatgtact
taacttccatatataaaatgcataaaactggttggagagatggctcagtg
gttaagagcactgactgctcttccagaggtcctgaattcaattcccagca
accccatggcggcttacaaccatctgtaatgggatccagtgtgtctaaac
acagctacagtgtactcatatacataaaataaataaataaatctctttta
aaaagtaaacatataaaaaccccctgtggccatcatatattccacaatga
taattttgtttgcggttagcagaatttgtgttcaaatgaattagggtttg
aatcctgattgacaccattactttcgtttttcaacctttgatgcttcttc
aaacttctttttcttttatcttttgatttgtggtttgtttttttttttct
ttctttcctagatagagtttttctgtttagtccctgctgtcctggaactc
actctgtagaccaggctggcctcaaactcagagaaacttacctctgcctc
ctgagtgctggtattaaagtgtcaccaccacacccagcaaacttctttct
ttttttttgataataaaggattaagcctagtgtattgtacatgccaatca
tatactggtactgctaagctgtacccatccacctgaataatctttactat
aaattgagttaaatgttactgtatggttacagcaagaattaattgaaata

gaattccatatccagagagagagggagaggttttgtcttgttcccctggg
tccttgtgcatgctggaattgaaccagaaccctcgctgggcaagcattat
ctgctgagctatgtttccagcctccgcacttttagatcccaatccactct
agcgtcagattttcattttctaatattatttatgtattcttgtgtctgtg
gtttatctgtctcacctcaagcacagggagagcaggtgtccctgtacttg
ctgcagagggcagccatgtttgttgaatgaccatgaagagctcctctgag
gtcatacaacaggcaagtggcacagctaggacttagatccagtgttgttt
ggctccaaagctagagagcccctctctctggggctgttacaaagcttaga
tgggtgctggagagatggcacagcagttaagagcactgactgctcttcca
gagagcatgagtacaattcccagcaaccacatggtggctcacaaccagct
gtaacgggatccgacactctcttctggtgtgtctgaagacagtgacagtg
tactgagtactcacatacatacaataaatcaatcttttaaaaaaaaggat
tatatacaaagcttagatgggtccccatgtcagccacttagcatactgtc
tggtagaaagttaatgtgtacattaaataacattgagttgttattggagg
gtggggggctcttgttctcattttctgcattggttaatggtaaccctttc
aaaggctggaggaagtctttaatgttgtctcacaggtatgctgacacgac
cctcaagttaggaaagcatgcagatgtgccagtaaaaggtatcagacagg
cctaacctctaccagacagaccaagtcaaccccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128858226_128859017
seq2: B6Ng01-192J24.b_43_842 (reverse)

seq1  TATTTC-ATTAATTCTTGCTGTAA-CATACAGTAACATTT-ACTCAATTT  47
      |||||| ||||||||||||||||| ||||||||||||||| |||||||||
seq2  TATTTCAATTAATTCTTGCTGTAACCATACAGTAACATTTAACTCAATTT  50

seq1  ATAGTAAAGATTA-TCAGGTGGATGGGTACAGCTTAGCAGTA-CAGTATA  95
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ATAGTAAAGATTATTCAGGTGGATGGGTACAGCTTAGCAGTACCAGTATA  100

seq1  TGATTAGCATGTACAATACACTAGGCTTAATCC-TTATTATC--AAAAAA  142
      ||||| ||||||||||||||||||||||||||| ||||||||  ||||||
seq2  TGATTGGCATGTACAATACACTAGGCTTAATCCTTTATTATCAAAAAAAA  150

seq1  AGAAAGAAGTTTGCTGGGTGTGGTGGTGACACTTTAATACCAGCACTCAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGTTTGCTGGGTGTGGTGGTGACACTTTAATACCAGCACTCAG  200

seq1  GAGGCAGAGGTAAGTTTCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGTAAGTTTCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT  250

seq1  GAGTTCCAGGACAGCAGGGACTAAACAGAAAAACTCTATCTAGGAAAGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCAGGGACTAAACAGAAAAACTCTATCTAGGAAAGAA  300

seq1  AGAAAAAAAAAAACAAACCACAAATCAAAAGATAAAAGAAAAAGAAGTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAAACAAACCACAAATCAAAAGATAAAAGAAAAAGAAGTTT  350

seq1  GAAGAAGCATCAAAGGTTGAAAAACGAAAGTAATGGTGTCAATCAGGATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCATCAAAGGTTGAAAAACGAAAGTAATGGTGTCAATCAGGATT  400

seq1  CAAACCCTAATTCATTTGAACACAAATTCTGCTAACCGCAAACAAAATTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTAATTCATTTGAACACAAATTCTGCTAACCGCAAACAAAATTA  450

seq1  TCATTGTGGAATATATGATGGCCACAGGGGGTTTTTATATGTTTACTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGGAATATATGATGGCCACAGGGGGTTTTTATATGTTTACTTTT  500

seq1  TAAAAGAGATTTATTTATTTATTTTATGTATATGAGTACACTGTAGCTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGATTTATTTATTTATTTTATGTATATGAGTACACTGTAGCTGT  550

seq1  GTTTAGACACACTGGATCCCATTACAGATGGTTGTAAGCCGCCATGGGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGACACACTGGATCCCATTACAGATGGTTGTAAGCCGCCATGGGGT  600

seq1  TGCTGGGAATTGAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAATTGAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC  650

seq1  CACTGAGCCATCTCTCCAACCAGTTTTATGCATTTTATATATGGAAGTTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCTCCAACCAGTTTTATGCATTTTATATATGGAAGTTA  700

seq1  AGTACATAGGAATTCTTTCTGAATGAAAATAACTTCCTTTCTACTATGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAGGAATTCTTTCTGAATGAAAATAACTTCCTTTCTACTATGTC  750

seq1  TTGAAAAAATGTACTTACTCTGTTTGATGAACTGGACACAACTGGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAATGTACTTACTCTGTTTGATGAACTGGACACAACTGGAATTC  800

seq1: chr4_128720171_128721051
seq2: B6Ng01-192J24.g_67_954

seq1  GAATTCCATATCCAGAGAGAGAGGGAGAGGTTTTGTCTTGTTCCCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCCAGAGAGAGAGGGAGAGGTTTTGTCTTGTTCCCCTGGG  50

seq1  TCCTTGTGCATGCTGGAATTGAACCAGAACCCTCGCTGGGCAAGCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGCATGCTGGAATTGAACCAGAACCCTCGCTGGGCAAGCATTAT  100

seq1  CTGCTGAGCTATGTTTCCAGCCTCCGCACTTTTAGATCCCAATCCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCTATGTTTCCAGCCTCCGCACTTTTAGATCCCAATCCACTCT  150

seq1  AGCGTCAGATTTTCATTTTCTAATATTATTTATGTATTCTTGTGTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGATTTTCATTTTCTAATATTATTTATGTATTCTTGTGTCTGTG  200

seq1  GTTTATCTGTCTCACCTCAAGCACAGGGAGAGCAGGTGTCCCTGTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTGTCTCACCTCAAGCACAGGGAGAGCAGGTGTCCCTGTACTTG  250

seq1  CTGCAGAGGGCAGCCATGTTTGTTGAATGACCATGAAGAGCTCCTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGGCAGCCATGTTTGTTGAATGACCATGAAGAGCTCCTCTGAG  300

seq1  GTCATACAACAGGCAAGTGGCACAGCTAGGACTTAGATCCAGTGTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACAACAGGCAAGTGGCACAGCTAGGACTTAGATCCAGTGTTGTTT  350

seq1  GGCTCCAAAGCTAGAGAGCCCCTCTCTCTGGGGCTGTTACAAAGCTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAAAGCTAGAGAGCCCCTCTCTCTGGGGCTGTTACAAAGCTTAGA  400

seq1  TGGGTGCTGGAGAGATGGCACAGCAGTTAAGAGCACTGACTGCTCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGAGAGATGGCACAGCAGTTAAGAGCACTGACTGCTCTTCCA  450

seq1  GAGAGCATGAGTACAATTCCCAGCAACCACATGGTGGCTCACAACCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATGAGTACAATTCCCAGCAACCACATGGTGGCTCACAACCAGCT  500

seq1  GTAACGGGATCCGACACTCTCTTCTGGTGTGTCTGAAGACAGTGACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGGGATCCGACACTCTCTTCTGGTGTGTCTGAAGACAGTGACAGTG  550

seq1  TACTGAGTACTCACATACATACAATAAATCAATCTTTTAAAAAAAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTACTCACATACATACAATAAATCAATCTTTTAAAAAAAAGGAT  600

seq1  TATATACAAAGCTTAGATGGGTCCCCATGTCAGCCACTTAGCATACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAAAGCTTAGATGGGTCCCCATGTCAGCCACTTAGCATACTGTC  650

seq1  TGGTAGAAAGTTAATGTGTACATTAAATAACATTGAGTTGTTATTGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAAGTTAATGTGTACATTAAATAACATTGAGTTGTTATTGGAGG  700

seq1  GTGGGGGGCTCTTGTTCTCATTTTCTGCATTGGTTAATGGTAACCC-TTC  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGGGGGGCTCTTGTTCTCATTTTCTGCATTGGTTAATGGTAACCCTTTC  750

seq1  CAAGGCTGGAGGAAGTCTTTAAGGTTGTCTCACAGGTATGCTGACACGAC  799
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGGCTGGAGGAAGTCTTTAATGTTGTCTCACAGGTATGCTGACACGAC  800

seq1  CCTC-AGGTAGG-AAGCATGCAGATGTGCCAGT-AAAGGTATCAGACAGG  846
      |||| || |||| |||||||||||||||||||| ||||||||||||||||
seq2  CCTCAAGTTAGGAAAGCATGCAGATGTGCCAGTAAAAGGTATCAGACAGG  850

seq1  CC-AACCTCTACCAGACAGA-CAAGTCAA-CCCCTCCC  881
      || ||||||||||||||||| |||||||| ||||||||
seq2  CCTAACCTCTACCAGACAGACCAAGTCAACCCCCTCCC  888