BAC Information

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BAC

Clone NameB6Ng01-192L15
Chromosome4 (Build37)
Map Location 131,831,369 - 131,992,362
singlet/doubletdoublet
Overlap geneTaf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11
Downstream geneMed18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192L15.bB6Ng01-192L15.g
ACCGA015890GA015891
length5641,148
definitionB6Ng01-192L15.b B6Ng01-192L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,991,795 - 131,992,362)(131,831,369 - 131,832,504)
sequence
aatttacaatgcctggtggacacggtatgcattcaaccagtgaacactat
cactgtgcctttctaggaggattttgtaccagcaagcaacgcgttgctaa
gctaggaatcctacttttctgaacgccagtatttacagcatcaaatgaac
tgtgaggccagggcagcaacgtgacaatcaataaatcttagcctcctcct
ttgcattttttgtgttgagacccgggaccaataaggacgtggaaaagcaa
acatctatatgtttgaacactacaccgcaaacagtcatgtttgaacacca
catgggtctttctgatccatctgtcacagggccagttctgcacttcctta
gttgcagaaatttcacctgtgccctgtccggacagaagaggtggcgtatc
tgcttcttccaagccaatcatggagtcaggaagatagtcacatatcacat
agtcagggctgatggatatcttctctgttttggttttgtatcagtttggt
ttgcttgtttttaatcccagtttacaacgcataacataactaacatcata
tatatatatgtgtg
gaattcttttacatttaagaaaaagaggatgcaaagagggattaggatca
ctgtgagccagattcttaggttatacagtactctaccatgtacatcgaag
aagagatgcttgcttgaaattatttgaataaatgcttttagaatctctac
cctcaaactcagaagggatttttttctaacggattttaatattttagtac
ctattatgtatggcattggcataaatgttacaagggaggaaacaaacttt
taagtgaaaagtcttttatttattttatttatttataaattttatttttc
aataagatgttgagaaattcacaagtaaatgtggcctagaacattttcta
gggattgcttttagaagagtgacttggaccctgtcatttcccttcataaa
gacccaggactgaaacctactcagatgaatcgtgcacaacttaagcactt
tgggctttttgttctgttttcttttggtttgtttgtttgtttgtttgttt
gttttcaagacagggttttctgtgtagccctggctgtcctggaactcact
gtgtagaccaggctggcttcaaagtcaagtccacctgcctctgcctcgga
gcgttcggtttaaaggtgtgcacctccaccatgaacaacttaaacacttt
taagtattccaccccttccttatcacagccccacagttaagtatggttag
tcctgttgtctgtccagagaggttaaggggtttgtcataaagtactgagt
agcttatctgcaaatgtgcctccaaagctttcttgagcttttctaagtgg
atttcctgccatgtgtagtatgcatgtgaatgaaatataagtaatatttt
ataaatccttccactgaatgaaagcacacccctcctccccaaactactta
gctccccctagcctgggaaattgctgtgtagacaagcttggcctcaactc
aaagatgcacctgcctctgactttcaaagcggctggttgattcaaggcta
cattcacaaaaccagcttctttaccttcctttcaagtcaagggactgtta
acttttaagagaacttcccataggtatttgacatctggaattccttggtg
ttttcaagagccaataattattccaggcgaactctttccataatagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131991795_131992362
seq2: B6Ng01-192L15.b_45_614 (reverse)

seq1  --CACACATATATATATGATGTTAGTTATGTTATGCGTTGTAAACTGGGA  48
        |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATATATGATGTTAGTTATGTTATGCGTTGTAAACTGGGA  50

seq1  TTAAAAACAAGCAAACCAAACTGATACAAAACCAAAACAGAGAAGATATC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAAGCAAACCAAACTGATACAAAACCAAAACAGAGAAGATATC  100

seq1  CATCAGCCCTGACTATGTGATATGTGACTATCTTCCTGACTCCATGATTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCCTGACTATGTGATATGTGACTATCTTCCTGACTCCATGATTG  150

seq1  GCTTGGAAGAAGCAGATACGCCACCTCTTCTGTCCGGACAGGGCACAGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAGAAGCAGATACGCCACCTCTTCTGTCCGGACAGGGCACAGGT  200

seq1  GAAATTTCTGCAACTAAGGAAGTGCAGAACTGGCCCTGTGACAGATGGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTGCAACTAAGGAAGTGCAGAACTGGCCCTGTGACAGATGGAT  250

seq1  CAGAAAGACCCATGTGGTGTTCAAACATGACTGTTTGCGGTGTAGTGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGACCCATGTGGTGTTCAAACATGACTGTTTGCGGTGTAGTGTTC  300

seq1  AAACATATAGATGTTTGCTTTTCCACGTCCTTATTGGTCCCGGGTCTCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAGATGTTTGCTTTTCCACGTCCTTATTGGTCCCGGGTCTCAA  350

seq1  CACAAAAAATGCAAAGGAGGAGGCTAAGATTTATTGATTGTCACGTTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAATGCAAAGGAGGAGGCTAAGATTTATTGATTGTCACGTTGCT  400

seq1  GCCCTGGCCTCACAGTTCATTTGATGCTGTAAATACTGGCGTTCAGAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCTCACAGTTCATTTGATGCTGTAAATACTGGCGTTCAGAAAA  450

seq1  GTAGGATTCCTAGCTTAGCAACGCGTTGCTTGCTGGTACAAAATCCTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTCCTAGCTTAGCAACGCGTTGCTTGCTGGTACAAAATCCTCCT  500

seq1  AGAAAGGCACAGTGATAGTGTTCACTGGTTGAATGCATACCGTGTCCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCACAGTGATAGTGTTCACTGGTTGAATGCATACCGTGTCCACC  550

seq1  AGGCATTGTAAATTGAATTC  568
      ||||||||||||||||||||
seq2  AGGCATTGTAAATTGAATTC  570

seq1: chr4_131831369_131832504
seq2: B6Ng01-192L15.g_69_1216

seq1  GAATTCTTTTACATTTAAGAAAAAGAGGATGCAAAGAGGGATTAGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACATTTAAGAAAAAGAGGATGCAAAGAGGGATTAGGATCA  50

seq1  CTGTGAGCCAGATTCTTAGGTTATACAGTACTCTACCATGTACATCGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCAGATTCTTAGGTTATACAGTACTCTACCATGTACATCGAAG  100

seq1  AAGAGATGCTTGCTTGAAATTATTTGAATAAATGCTTTTAGAATCTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGCTTGCTTGAAATTATTTGAATAAATGCTTTTAGAATCTCTAC  150

seq1  CCTCAAACTCAGAAGGGATTTTTTTCTAACGGATTTTAATATTTTAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCAGAAGGGATTTTTTTCTAACGGATTTTAATATTTTAGTAC  200

seq1  CTATTATGTATGGCATTGGCATAAATGTTACAAGGGAGGAAACAAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTATGGCATTGGCATAAATGTTACAAGGGAGGAAACAAACTTT  250

seq1  TAAGTGAAAAGTCTTTTATTTATTTTATTTATTTATAAATTTTATTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAAAGTCTTTTATTTATTTTATTTATTTATAAATTTTATTTTTC  300

seq1  AATAAGATGTTGAGAAATTCACAAGTAAATGTGGCCTAGAACATTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGTTGAGAAATTCACAAGTAAATGTGGCCTAGAACATTTTCTA  350

seq1  GGGATTGCTTTTAGAAGAGTGACTTGGACCCTGTCATTTCCCTTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCTTTTAGAAGAGTGACTTGGACCCTGTCATTTCCCTTCATAAA  400

seq1  GACCCAGGACTGAAACCTACTCAGATGAATCGTGCACAACTTAAGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGACTGAAACCTACTCAGATGAATCGTGCACAACTTAAGCACTT  450

seq1  TGGGCTTTTTGTTCTGTTTTCTTTTGGTTTGTTTGTTTGTTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTTGTTCTGTTTTCTTTTGGTTTGTTTGTTTGTTTGTTTGTTT  500

seq1  GTTTTCAAGACAGGGTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAGACAGGGTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  550

seq1  GTGTAGACCAGGCTGGCTTCAAAGTCAAGTCCACCTGCCTCTGCCTCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACCAGGCTGGCTTCAAAGTCAAGTCCACCTGCCTCTGCCTCGGA  600

seq1  GCGTTCGGTTTAAAGGTGTGCACCTCCACCATGAACAACTTAAACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCGGTTTAAAGGTGTGCACCTCCACCATGAACAACTTAAACACTTT  650

seq1  TAAGTATTCCACCCCTTCCTTATCACAGCCCCACAGTTAAGTATGGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTCCACCCCTTCCTTATCACAGCCCCACAGTTAAGTATGGTTAG  700

seq1  TCCTGTTGTCTGTCCAGAGAGGTTAAGGGGTTTGTCATAAAGTACTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGTCTGTCCAGAGAGGTTAAGGGGTTTGTCATAAAGTACTGAGT  750

seq1  AGCTTATCTGCAAATGTGCCTCCAAAGCTTTCTTGAGCTTTTCTAAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATCTGCAAATGTGCCTCCAAAGCTTTCTTGAGCTTTTCTAAGTGG  800

seq1  ATTTCCTGCCATGTGTAGTATGCATGTGAATGAAATATAAGTAATA-TTT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTCCTGCCATGTGTAGTATGCATGTGAATGAAATATAAGTAATATTTT  850

seq1  ATAAATCCTTCCACTGAATGAAAGCACACCCCTCCTCCCCAAACTACTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTTCCACTGAATGAAAGCACACCCCTCCTCCCCAAACTACTTA  900

seq1  GCTCCCCCTAGCCT-GGAAATTGCTGTGTAGACCAGGCTGGCCTCAAACT  948
      |||||||||||||| |||||||||||||||||| ||  ||||||| ||||
seq2  GCTCCCCCTAGCCTGGGAAATTGCTGTGTAGACAAGCTTGGCCTC-AACT  949

seq1  CAGAGATGCACCTGCCTCTGAC-TTCAGAGC-GCTGG-TGATTCAAGGCT  995
      || ||||||||||||||||||| |||| ||| ||||| ||||||||||||
seq2  CAAAGATGCACCTGCCTCTGACTTTCAAAGCGGCTGGTTGATTCAAGGCT  999

seq1  ACATCACCAAAACCAGCTTC-TTAACTCCTTTTCAAGTCAA-GGACTG-T  1042
      ||||   ||||||||||||| ||| || | ||||||||||| |||||| |
seq2  ACATTCACAAAACCAGCTTCTTTACCTTCCTTTCAAGTCAAGGGACTGTT  1049

seq1  AACTTTTAAGA-TACTT-CCATA-GTATTTGACATCT-GAATTCCT--GT  1086
      |||||||||||  |||| ||||| ||||||||||||| ||||||||  ||
seq2  AACTTTTAAGAGAACTTCCCATAGGTATTTGACATCTGGAATTCCTTGGT  1099

seq1  GTTTTCACAGAAGC-ATAAATATTCCAGGTAGAATCTTTCCCATAATAGA  1135
      ||||||| |||  | |||| |||||||||   | ||||| ||||||||||
seq2  GTTTTCA-AGAGCCAATAATTATTCCAGGCGAACTCTTT-CCATAATAGA  1147

seq1  G  1136
      |
seq2  G  1148