BAC Information

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BAC

Clone NameB6Ng01-193C13
Chromosome4 (Build37)
Map Location 134,835,249 - 134,986,619
singlet/doubletdoublet
Overlap geneLOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2
Upstream genePdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4
Downstream geneNpal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193C13.bB6Ng01-193C13.g
ACCGA016209GA016210
length7161,041
definitionB6Ng01-193C13.b B6Ng01-193C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,835,249 - 134,835,962)(134,985,566 - 134,986,619)
sequence
gaattcaagtgtgtcggtacattgggaattagatcctataatttcctgct
gtttgtggccaagccataagtttggctgaagtttaacctgaatgcagtat
ttatagaatgactgacctttccagcctctgaggagacggggagtcattta
acaagcctgagaggtagccaggtggtggtggcgcacaccattaatcccag
cactcgggagacaggggcaggcggatttctgagttcgagaccagcctggt
ctacaaagtgagttccaggacagccagggctatacagagaaaccctgtct
tgaaaaaccaaaacaaacaaacaaacaacaacaataacagcaaaattaaa
caagcctgagaggtagagacaggttacctgtcaccttttctcagctcaag
aaataaaaagctcagaagcccttcctggccaccaggctagcccaatagct
ggatcttcactagagaatagaccatcaaggcacaatgtctacagtggaga
acaccaaggctcagagagtgtactggctggctctgtgtgtcaactggaca
caggctggagttatcacagagaaaggaacctccctttaggaaaggcctcc
atgagatccagctgcaaggcatttttctcaattagtgatcaagggggaag
ggccccttgtggaggtgccaccccctaggctggtagtcctgggttctata
agaaagcaagctgagc
gaattcaccttttccttgtcagctgaaattgcttgccattcagccctgat
ggcttagctctgtccccaggctggtgcagcagagcagatggtcaaggtct
gtccttggaggcttcccactcacgcaatgtttgcatgaggaaaccattag
cctagcctagcgggaagccagccagggccgggcagcactggagatgatgc
taggcggggaccagcacaggtggggcttgcaacagttgcaggaatcagca
ctggagatgatgctaggcctggaccagcacaggtggggcttgcaacagtt
gcaggaatcagcactggagatgatgctaggcctggatcagcacaggtggg
gcttgcaacagttacaggaatcaggaatagagcctttgtgctggggacag
aacccagggcctcctgatgccaggcaaggcctggagctctgagcctgggc
ttcagccctgtagtgtttgcttattgccctcatgaaaccaaggctagctt
atctctgtccatacttctcttttccatttgaaatgcatttagcatgtcag
gaaattctaaagtgattgacagtgtaggcttttgagcaaaaaacaaaaca
tcaaaaactctcacgtattttcatcaagatagccgatatctacctagaaa
tggcagataatgtatgacataaaattctgtgaggctcacacaaggcctgg
tggccttttccgggctgttttaaatctgtctttacactagaagcagagaa
ctaagtcagtggctgtttgggagctcggtttcctgataggtcctctctgc
tttccttgaggtcatactaaatgctagggtttttctccctttatattgtg
atttactcagttttttttttcctttttcattccatatatagtctaaacat
gagttctaacagtagttctggtactattgggctcctttcaaccaacaggg
aaactcacatcagcttgtgttaatagtgctagcacagcgtgtgtgagtgt
acctctgatatgagcatatttctctattcttattgggtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134835249_134835962
seq2: B6Ng01-193C13.b_47_762

seq1  GAATTCAAGTGTGTCGGTACATTGGGAATTAGATCCTATAATTTCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTGTCGGTACATTGGGAATTAGATCCTATAATTTCCTGCT  50

seq1  GTTTGTGGCCAAGCCATAAGTTTGGCTGAAGTTTAACCTGAATGCAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGCCAAGCCATAAGTTTGGCTGAAGTTTAACCTGAATGCAGTAT  100

seq1  TTATAGAATGACTGACCTTTCCAGCCTCTGAGGAGACGGGGAGTCATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAATGACTGACCTTTCCAGCCTCTGAGGAGACGGGGAGTCATTTA  150

seq1  ACAAGCCTGAGAGGTAGCCAGGTGGTGGTGGCGCACACCATTAATCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTGAGAGGTAGCCAGGTGGTGGTGGCGCACACCATTAATCCCAG  200

seq1  CACTCGGGAGACAGGGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGAGACAGGGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGT  250

seq1  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT  300

seq1  TGAAAAACCAAAACAAACAAACAAACAACAACAATAACAGCAAAATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACCAAAACAAACAAACAAACAACAACAATAACAGCAAAATTAAA  350

seq1  CAAGCCTGAGAGGTAGAGACAGGTTACCTGTCACCTTTTCTCAGCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAGAGGTAGAGACAGGTTACCTGTCACCTTTTCTCAGCTCAAG  400

seq1  AAATAAAAAGCTCAGAAGCCCTTCCTGGCCACCAGGCTAGCCCAATAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGCTCAGAAGCCCTTCCTGGCCACCAGGCTAGCCCAATAGCT  450

seq1  GGATCTTCACTAGAGAATAGACCATCAAGGCACAATGTCTACAGTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCACTAGAGAATAGACCATCAAGGCACAATGTCTACAGTGGAGA  500

seq1  ACACCAAGGCTCAGAGAGTGTACTGGCTGGCTCTGTGTGTCAACTGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGGCTCAGAGAGTGTACTGGCTGGCTCTGTGTGTCAACTGGACA  550

seq1  CAGGCTGGAGTTATCACAGAGAAAGGAACCTCCCTTTAGGAAAGGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGAGTTATCACAGAGAAAGGAACCTCCCTTTAGGAAAGGCCTCC  600

seq1  ATGAGATCCAGCTGCAAGGCA-TTTTCTCAATTAGTGATCAAGGGGGAAG  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGAGATCCAGCTGCAAGGCATTTTTCTCAATTAGTGATCAAGGGGGAAG  650

seq1  GGCCCCTTGTGGAGGTGCCA-CCCCTAGGCTGGTAGTCCTGGGTTCTATA  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCCCTTGTGGAGGTGCCACCCCCTAGGCTGGTAGTCCTGGGTTCTATA  700

seq1  AGAAAGCAAGCTGAGC  714
      ||||||||||||||||
seq2  AGAAAGCAAGCTGAGC  716

seq1: chr4_134985566_134986619
seq2: B6Ng01-193C13.g_66_1106 (reverse)

seq1  TTTACCCAATAAAGATATTAGGAGAAATAATGCTCATATTCAGAGTAACA  50
      ||||||||||||  |||    ||||||| ||||||||| ||||||  |||
seq2  TTTACCCAATAAGAATA----GAGAAAT-ATGCTCATA-TCAGAGGTACA  44

seq1  CTTCACACACGGCTGTGCTAAGCAACTATTTAACACAAGCTTGATGTGAG  100
      | |||||||| |||||||| ||| |||| ||||||||||| |||||||||
seq2  C-TCACACAC-GCTGTGCT-AGC-ACTA-TTAACACAAGC-TGATGTGAG  88

seq1  TTTCCCTGTTGGTTGAAAGGAGCCCAATAGTACCAGAACTACTGTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTTGGTTGAAAGGAGCCCAATAGTACCAGAACTACTGTTAGAA  138

seq1  CTCATGTTTAGACTATAATATGGAATGAAAAAGGAAAAAAAAAACTGAGT  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCATGTTTAGACTAT-ATATGGAATGAAAAAGGAAAAAAAAAACTGAGT  187

seq1  AAATCACAATATAAAGGGAGAAAAACCCTAGCATTTAGTATGACCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAATATAAAGGGAGAAAAACCCTAGCATTTAGTATGACCTCAAG  237

seq1  GAAAGCAGAGAGGACCTATCAGGAAACCGAGCTCCCAAACAGCCACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGAGAGGACCTATCAGGAAACCGAGCTCCCAAACAGCCACTGAC  287

seq1  TTAGTTCTCTGCTTCTAGTGTAAAGACAGATTTAAAACAGCCCGGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTCTGCTTCTAGTGTAAAGACAGATTTAAAACAGCCCGGAAAAG  337

seq1  GCCACCAGGCCTTGTGTGAGCCTCACAGAATTTTATGTCATACATTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGGCCTTGTGTGAGCCTCACAGAATTTTATGTCATACATTATCT  387

seq1  GCCATTTCTAGGTAGATATCGGCTATCTTGATGAAAATACGTGAGAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTAGGTAGATATCGGCTATCTTGATGAAAATACGTGAGAGTTT  437

seq1  TTGATGTTTTGTTTTTTGCTCAAAAGCCTACACTGTCAATCACTTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTTTGTTTTTTGCTCAAAAGCCTACACTGTCAATCACTTTAGAA  487

seq1  TTTCCTGACATGCTAAATGCATTTCAAATGGAAAAGAGAAGTATGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACATGCTAAATGCATTTCAAATGGAAAAGAGAAGTATGGACAG  537

seq1  AGATAAGCTAGCCTTGGTTTCATGAGGGCAATAAGCAAACACTACAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCTAGCCTTGGTTTCATGAGGGCAATAAGCAAACACTACAGGGC  587

seq1  TGAAGCCCAGGCTCAGAGCTCCAGGCCTTGCCTGGCATCAGGAGGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCAGGCTCAGAGCTCCAGGCCTTGCCTGGCATCAGGAGGCCCTG  637

seq1  GGTTCTGTCCCCAGCACAAAGGCTCTATTCCTGATTCCTGTAACTGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTCCCCAGCACAAAGGCTCTATTCCTGATTCCTGTAACTGTTGC  687

seq1  AAGCCCCACCTGTGCTGATCCAGGCCTAGCATCATCTCCAGTGCTGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCACCTGTGCTGATCCAGGCCTAGCATCATCTCCAGTGCTGATTC  737

seq1  CTGCAACTGTTGCAAGCCCCACCTGTGCTGGTCCAGGCCTAGCATCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTGTTGCAAGCCCCACCTGTGCTGGTCCAGGCCTAGCATCATCT  787

seq1  CCAGTGCTGATTCCTGCAACTGTTGCAAGCCCCACCTGTGCTGGTCCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGATTCCTGCAACTGTTGCAAGCCCCACCTGTGCTGGTCCCCG  837

seq1  CCTAGCATCATCTCCAGTGCTGCCCGGCCCTGGCTGGCTTCCCGCTAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATCATCTCCAGTGCTGCCCGGCCCTGGCTGGCTTCCCGCTAGGC  887

seq1  TAGGCTAATGGTTTCCTCATGCAAACATTGCGTGAGTGGGAAGCCTCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAATGGTTTCCTCATGCAAACATTGCGTGAGTGGGAAGCCTCCAA  937

seq1  GGACAGACCTTGACCATCTGCTCTGCTGCACCAGCCTGGGGACAGAGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACCTTGACCATCTGCTCTGCTGCACCAGCCTGGGGACAGAGCTA  987

seq1  AGCCATCAGGGCTGAATGGCAAGCAATTTCAGCTGACAAGGAAAAGGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAGGGCTGAATGGCAAGCAATTTCAGCTGACAAGGAAAAGGTGA  1037

seq1  ATTC  1054
      ||||
seq2  ATTC  1041