BAC Information

Click to search

BAC

Clone NameB6Ng01-193N22
Chromosome4 (Build37)
Map Location 84,969,846 - 85,130,266
singlet/doubletdoublet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193N22.bB6Ng01-193N22.g
ACCGA016716GA016717
length1,1141,080
definitionB6Ng01-193N22.b B6Ng01-193N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,129,201 - 85,130,266)(84,969,846 - 84,970,923)
sequence
ggaattctttattgtgtattcattagtacattcatttttcctcaaatttt
tagaaacccaaatgaaaacattgtgaggttctggatgactgggtcctagg
ctctgtgcttcctgtacctaaggtcagtcagcgagagaatgatacactgt
acctaaggtcagtcagcgagagaatgatacgctgtatttatgatatgatt
catagccacacctctgggtaccagctggatagcaaccctgcaacacacct
aaatgtgtttgtcagaggaagtacttgatatatgctattaaaattatgta
taatatactactatataaagaaaacacagcatttcttggtactttctatt
ggtatgtgtgaatgtatataatagatccaggagggtcagtccttaaaagt
ggtataacagttatggacaaacagtttgggttataacggtcaaaggggac
ttttcctttattttattgaattaatggcttttagggacactttattcctt
gtgctccttatgcaaaaagagataataagcatttaattaaaggctgtgta
taccatctggtctaggaaaagctgttcacaaacccagaagatcttctttg
aagaagtgtgatgtttatagttgaagagctaagagcagtgtgcctaagcc
agattttcccaggcttgtgtcccagctctctcactgacaagttactcagc
ccccatttatcctcagctataaaatagaagaaatagttataacccatatt
agcaggctattgtaagaattaaataggttccttccgctcgactcgagact
cgagccccgggctaccttgccagcagagtcttgcccaacacccgcaaggg
tccacacgggactccccacgggaccctaagacctctggtgagtggaccac
agtgcctgccccaatccaatcgcgcggaaccttgagactgcggtacatag
ggaagcaggctacccgggcctgatctggggcacagtccttcgctcgactc
gtgactcgagccccggctacttgccagcagagtcttgcccaacaccccgc
caagggttccacacagactccccccacggacctagacttctggtggagtt
ggatcacagtgact

gaattcatgtaagggaaagggacatttgcatgagtataaattcatatgtg
tatagagaccagctcctgatgttagtcagggtgtagttgtttttaaaaca
gtacaatggaggatggattcaatgaggctcccggtttcagtctgagctca
gttagctccatttgttggatcttcccaaaccaaaggggatgctgggtcag
aactgttcatctcatgctatctgaaaaatagagagagacccagagaagcc
agaggcaagaagtgtccttcaaaggcacacccctctgggaccttctttct
attaggctccacttctaggagtttccattattttccagtgatgtcatcaa
gttacaggtctaccaatagatttattaactgactaagtcagagtcattca
ttcatgatttaattttcagtggatgcatctcttaactgggaggccaggcc
ttcacagtcctttcccgaggacacttacaaactgtaataaaccacatttg
cgcatagccacacatagacatatacacattaatgttatttttttttaacc
agctgaactgttattaattaatttaacaaatattgattgagcttctagta
tgttctagatactgtggaaggacagtggatgcagagaggaataagactat
gcatcttgtttacaagtggctttctgactcaggagggagattgaaataca
aagcattgacatcagatccagggcgttgctaagtgtactgtgtgtgcttt
gggacctcagaggaagaagcaaagtgccaactcctaaaaattggaggcag
ggggatcatacagcttatgcagctaagtctccgagtctctgaacaaaacc
tttccaatatacctcttcctttcaatgaaaaatattttctattttagaca
cttttgcatgtaattacagacttttttcttatgttaactgaagtcagttc
tctaccaatctccctctgaatttctcagtgcagtcccgagagggagtcta
attcctactcaacacatccctacttcagttctggagagcatcttgtccct
gctttcccaagttcacctcctcagatctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85129201_85130266
seq2: B6Ng01-193N22.b_98_1162 (reverse)

seq1  AGGCACTGTGATCC-ACT-CACCAGAGGTCTTAGGGTCCCGTGGGGAGTC  48
      || ||||||||||| ||| ||||||| ||| ||||  |  | ||||||| 
seq2  AGTCACTGTGATCCAACTCCACCAGAAGTC-TAGGTCCGTGGGGGGAGT-  48

seq1  CTGTGTGG-ACCCTTG--CGGGTGTTGGGCAAGACTCTGCTGGCAAGGTA  95
      |||||||| |||||||   ||||||||||||||||||||||||||| |||
seq2  CTGTGTGGAACCCTTGGCGGGGTGTTGGGCAAGACTCTGCTGGCAA-GTA  97

seq1  GCCCGGGGCTCGAGTCACGAGTCGAGCGGAAGGGACTTGTGCCCCAGATC  145
      | ||||||||||||||||||||||||||  | |||| |||||||||||||
seq2  G-CCGGGGCTCGAGTCACGAGTCGAGCG--AAGGAC-TGTGCCCCAGATC  143

seq1  AGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAA-GTTCCGCGC  194
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGGTTCCGCGC  193

seq1  GATTGGATTGGGGCAGGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATTGGGGCAGGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTC  243

seq1  CCGTGGGGAGTCCCGTGTGGACCCTTGCGGGTGTTGGGCAAGACTCTGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGGAGTCCCGTGTGGACCCTTGCGGGTGTTGGGCAAGACTCTGCT  293

seq1  GGCAAGGTAGCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGAACCTATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTAGCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGAACCTATT  343

seq1  TAATTCTTACAATAGCCTGCTAATATGGGTTATAACTATTTCTTCTATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTACAATAGCCTGCTAATATGGGTTATAACTATTTCTTCTATTT  393

seq1  TATAGCTGAGGATAAATGGGGGCTGAGTAACTTGTCAGTGAGAGAGCTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGAGGATAAATGGGGGCTGAGTAACTTGTCAGTGAGAGAGCTGG  443

seq1  GACACAAGCCTGGGAAAATCTGGCTTAGGCACACTGCTCTTAGCTCTTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGCCTGGGAAAATCTGGCTTAGGCACACTGCTCTTAGCTCTTCA  493

seq1  ACTATAAACATCACACTTCTTCAAAGAAGATCTTCTGGGTTTGTGAACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAACATCACACTTCTTCAAAGAAGATCTTCTGGGTTTGTGAACAG  543

seq1  CTTTTCCTAGACCAGATGGTATACACAGCCTTTAATTAAATGCTTATTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTAGACCAGATGGTATACACAGCCTTTAATTAAATGCTTATTAT  593

seq1  CTCTTTTTGCATAAGGAGCACAAGGAATAAAGTGTCCCTAAAAGCCATTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGCATAAGGAGCACAAGGAATAAAGTGTCCCTAAAAGCCATTA  643

seq1  ATTCAATAAAATAAAGGAAAAGTCCCCTTTGACCGTTATAACCCAAACTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAAAATAAAGGAAAAGTCCCCTTTGACCGTTATAACCCAAACTG  693

seq1  TTTGTCCATAACTGTTATACCACTTTTAAGGACTGACCCTCCTGGATCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCATAACTGTTATACCACTTTTAAGGACTGACCCTCCTGGATCTA  743

seq1  TTATATACATTCACACATACCAATAGAAAGTACCAAGAAATGCTGTGTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACATTCACACATACCAATAGAAAGTACCAAGAAATGCTGTGTTT  793

seq1  TCTTTATATAGTAGTATATTATACATAATTTTAATAGCATATATCAAGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATAGTAGTATATTATACATAATTTTAATAGCATATATCAAGTA  843

seq1  CTTCCTCTGACAAACACATTTAGGTGTGTTGCAGGGTTGCTATCCAGCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGACAAACACATTTAGGTGTGTTGCAGGGTTGCTATCCAGCTG  893

seq1  GTACCCAGAGGTGTGGCTATGAATCATATCATAAATACAGCGTATCATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGAGGTGTGGCTATGAATCATATCATAAATACAGCGTATCATTC  943

seq1  TCTCGCTGACTGACCTTAGGTACAGTGTATCATTCTCTCGCTGACTGACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTGACTGACCTTAGGTACAGTGTATCATTCTCTCGCTGACTGACC  993

seq1  TTAGGTACAGGAAGCACAGAGCCTAGGACCCAGTCATCCAGAACCTCACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACAGGAAGCACAGAGCCTAGGACCCAGTCATCCAGAACCTCACA  1043

seq1  ATGTTTTCATTTGGGTTTCTAA  1066
      ||||||||||||||||||||||
seq2  ATGTTTTCATTTGGGTTTCTAA  1065


seq1: chr4_84969846_84970923
seq2: B6Ng01-193N22.g_65_1144

seq1  GAATTCATGTAAGGGAAAGGGACATTTGCATGAGTATAAATTCATATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAAGGGAAAGGGACATTTGCATGAGTATAAATTCATATGTG  50

seq1  TATAGAGACCAGCTCCTGATGTTAGTCAGGGTGTAGTTGTTTTTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACCAGCTCCTGATGTTAGTCAGGGTGTAGTTGTTTTTAAAACA  100

seq1  GTACAATGGAGGATGGATTCAATGAGGCTCCCGGTTTCAGTCTGAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATGGAGGATGGATTCAATGAGGCTCCCGGTTTCAGTCTGAGCTCA  150

seq1  GTTAGCTCCATTTGTTGGATCTTCCCAAACCAAAGGGGATGCTGGGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCCATTTGTTGGATCTTCCCAAACCAAAGGGGATGCTGGGTCAG  200

seq1  AACTGTTCATCTCATGCTATCTGAAAAATAGAGAGAGACCCAGAGAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCATCTCATGCTATCTGAAAAATAGAGAGAGACCCAGAGAAGCC  250

seq1  AGAGGCAAGAAGTGTCCTTCAAAGGCACACCCCTCTGGGACCTTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGAAGTGTCCTTCAAAGGCACACCCCTCTGGGACCTTCTTTCT  300

seq1  ATTAGGCTCCACTTCTAGGAGTTTCCATTATTTTCCAGTGATGTCATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTCCACTTCTAGGAGTTTCCATTATTTTCCAGTGATGTCATCAA  350

seq1  GTTACAGGTCTACCAATAGATTTATTAACTGACTAAGTCAGAGTCATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGTCTACCAATAGATTTATTAACTGACTAAGTCAGAGTCATTCA  400

seq1  TTCATGATTTAATTTTCAGTGGATGCATCTCTTAACTGGGAGGCCAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTTAATTTTCAGTGGATGCATCTCTTAACTGGGAGGCCAGGCC  450

seq1  TTCACAGTCCTTTCCCGAGGACACTTACAAACTGTAATAAACCACATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCCTTTCCCGAGGACACTTACAAACTGTAATAAACCACATTTG  500

seq1  CGCATAGCCACACATAGACATATACACATTAATGTTATTTTTTTTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATAGCCACACATAGACATATACACATTAATGTTATTTTTTTTTAACC  550

seq1  AGCTGAACTGTTATTAATTAATTTAACAAATATTGATTGAGCTTCTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTGTTATTAATTAATTTAACAAATATTGATTGAGCTTCTAGTA  600

seq1  TGTTCTAGATACTGTGGAAGGACAGTGGATGCAGAGAGGAATAAGACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGATACTGTGGAAGGACAGTGGATGCAGAGAGGAATAAGACTAT  650

seq1  GCATCTTGTTTACAAGTGGCTTTCTGACTCAGGAGGGAGATTGAAATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGTTTACAAGTGGCTTTCTGACTCAGGAGGGAGATTGAAATACA  700

seq1  AAGCATTGACATCAGATCCAGGGCGTTGCTAAGTGTACTGTGTGTGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGACATCAGATCCAGGGCGTTGCTAAGTGTACTGTGTGTGCTTT  750

seq1  GGGACCTCAGAGGAAGAAGCAAAGTGCCAACTCCTAAAAATTGGAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCAGAGGAAGAAGCAAAGTGCCAACTCCTAAAAATTGGAGGCAG  800

seq1  GGGGATCATACAGCTTATGCAGCTAAGTCTCCGAGTCTCTGAACAAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCATACAGCTTATGCAGCTAAGTCTCCGAGTCTCTGAACAAAACC  850

seq1  TTTCCAATATACCTCTTCCTTTCAATG-AAAATATTTTCTATTTTAGACA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCCAATATACCTCTTCCTTTCAATGAAAAATATTTTCTATTTTAGACA  900

seq1  CTTTTGCATGTAATTACAGACTTTTTTCTTATGTTAACTGAAGTCAGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATGTAATTACAGACTTTTTTCTTATGTTAACTGAAGTCAGTTC  950

seq1  TCTACCAATCTCCCTCTGAATTTCTTCAGTGCAGTCCCGAGA-GGAGTCT  998
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TCTACCAATCTCCCTCTGAATTTC-TCAGTGCAGTCCCGAGAGGGAGTCT  999

seq1  AATTCCTACTCAACCACATCCCTAC-TCAGTTCT-GAGAGCATCTTGTTC  1046
      ||||||||||||| ||||||||||| |||||||| |||||||||||| ||
seq2  AATTCCTACTCAA-CACATCCCTACTTCAGTTCTGGAGAGCATCTTG-TC  1047

seq1  CCTGCCTTTCCAAG-TCACCTCTCCAGATCTCT  1078
      ||||| || ||||| |||||||  |||||||||
seq2  CCTGCTTTCCCAAGTTCACCTCCTCAGATCTCT  1080


| Home | SequenceCutter | Blast | Download |