BAC Information

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BAC

Clone NameB6Ng01-194H04
Chromosome4 (Build37)
Map Location 58,032,045 - 58,191,724
singlet/doubletdoublet
Overlap geneSvep1
Upstream geneEpb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8
Downstream geneMusk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194H04.bB6Ng01-194H04.g
ACCGA017138GA017139
length1,1041,112
definitionB6Ng01-194H04.b B6Ng01-194H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,032,045 - 58,033,151)(58,190,595 - 58,191,724)
sequence
gaattcctttactgtcaggaacaaaactctatttcaccctctgatgcaag
gcaagggcaggagctgtgttcactggcacaggataaatgaaccaaaatgg
cagggttgtctggaaatatgcctttttggctcatgtggaaaaaaggaaaa
gcaaaaccaaggactcaaagaaagaccaaggtggaaatggccactctcct
gcctcactcagcccctgctctgtgcatgtagggaaatgagacgccttcct
tacctgagtgaaaagcagtgctgagggcaaagttgctcagtggaagttct
ttacaatcttgacacggaatcagttttccatttaaaagttgtgattattc
tgtggttctttacatattcttatttttttttcctggtatcaaatggtagc
tttagtttcccaagtgaccttttgtgaataatgacctaaatatcttctag
gacaaatctaagataaaaatacataaaaattaaagatgtacctagctaat
caataattacaacgctatgcagatatggtgccacttcagagcctgaggcc
ggaggacatcgagtttgaggtcagctatccaggaagactctttagtattt
tccaatttattttgtgggttaagaaagaaagactctttagtattttccaa
tttattttgtgggttaagaaagaagggagaagaaaatagttttctccagc
caatttaccaccaatttttcttgattacgtttttccattctcatagaaac
taccaggaatcatgtgtgataacacaatttcaaggcatttctgagtgatg
tatgtatctattcctaccccagatccatactttttaaaaattacatagtc
aattaaaatataaaagctggatatctagtgccatccctttctcgaggtgt
gaggtggtgggtgccactgtgatgaacaaggaagtgatggggaggtggaa
aaaattgggaacaacaacaaaaaggaacagcgagagagaaaaaaagagct
acagacagaggcagacctggggatgtgatggtagtgacgatgatagaggg
ctgagttgacattactgtccatgcctaatagggttggtgatggtatgcac
agca
gaattcatcggtggccttacgcaccgcgagcgtataaggatgtttaactg
tatggttctcagttaggtgaacttgcctattgtaatatgaacctggagaa
aagaatccaggcagaatgtgaggtgttgacagaagatttagatatgtgcc
aaattgagccatgatcctggcaggttctcaagttaaaaaaaaaaaatcaa
cgtaaggcaggaatgataacaatatattcaaagaacctgtgaggctcaaa
aaagccaggttatccctggtggaattccaaaagaagagtttccagtgggc
tacaagtgagcctattgctgtggctttagtaaaaaggattagcttctctg
aggatggggttcctagctaaccttactagaattaagactcagaaaaatgg
ggtggactggggagtgagtttggggatgaaaaccaggcttagatataaac
cctaggcttacaactggtttaatttctaaaagttaggccataaaaattca
gaattcttggacttggatcctagtttcatcgtctattaagtgagtgattt
ggaggcaaattatcggtcttctaacagttcttagagttctggccagtgag
agtagtacttacttcacaggctcactatgggagtcaaataggttaagaca
tacaaaagaattagaaaatcactgatggggcctgagaaatcattgagtaa
aaagtgcttgctgctaagatctacaagtcagatccctgggacccatatgg
aaaataataaaaaaaaaaaaaaaaaaaaaaaaaggatccaggtgttatgc
ccatatccactgacgaaataaatacaacaaaaagcaaatcactgggtggc
atttataaagggctcggggactattttttattgcattcaattactcattg
aatataaatgggtaacggatcattgggttattaattgtttcaggcaatca
agtatggggtttcgatcttttctctcattcgaaataggagtacaacatat
ggtggcacagatttctgaaaggaaaacctcaatctcacgaggctcatgct
agacgtggtcaaagtaccagcacagcgtgcatctgggaacaggtagacta
cagtgggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58032045_58033151
seq2: B6Ng01-194H04.b_45_1147

seq1  GAATTCCTTTACTGTCAGGAACAAAACTCTATTTCACCCTCTGATGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACTGTCAGGAACAAAACTCTATTTCACCCTCTGATGCAAG  50

seq1  GCAAGGGCAGGAGCTGTGTTCACTGGCACAGGATAAATGAACCAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCAGGAGCTGTGTTCACTGGCACAGGATAAATGAACCAAAATGG  100

seq1  CAGGGTTGTCTGGAAATATGCCTTTTTGGCTCATGTGGAAAAAAGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGTCTGGAAATATGCCTTTTTGGCTCATGTGGAAAAAAGGAAAA  150

seq1  GCAAAACCAAGGACTCAAAGAAAGACCAAGGTGGAAATGGCCACTCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCAAGGACTCAAAGAAAGACCAAGGTGGAAATGGCCACTCTCCT  200

seq1  GCCTCACTCAGCCCCTGCTCTGTGCATGTAGGGAAATGAGACGCCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTCAGCCCCTGCTCTGTGCATGTAGGGAAATGAGACGCCTTCCT  250

seq1  TACCTGAGTGAAAAGCAGTGCTGAGGGCAAAGTTGCTCAGTGGAAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGTGAAAAGCAGTGCTGAGGGCAAAGTTGCTCAGTGGAAGTTCT  300

seq1  TTACAATCTTGACACGGAATCAGTTTTCCATTTAAAAGTTGTGATTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCTTGACACGGAATCAGTTTTCCATTTAAAAGTTGTGATTATTC  350

seq1  TGTGGTTCTTTACATATTCTTATTTTTTTTTCCTGGTATCAAATGGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCTTTACATATTCTTATTTTTTTTTCCTGGTATCAAATGGTAGC  400

seq1  TTTAGTTTCCCAAGTGACCTTTTGTGAATAATGACCTAAATATCTTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTCCCAAGTGACCTTTTGTGAATAATGACCTAAATATCTTCTAG  450

seq1  GACAAATCTAAGATAAAAATACATAAAAATTAAAGATGTACCTAGCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATCTAAGATAAAAATACATAAAAATTAAAGATGTACCTAGCTAAT  500

seq1  CAATAATTACAACGCTATGCAGATATGGTGCCACTTCAGAGCCTGAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTACAACGCTATGCAGATATGGTGCCACTTCAGAGCCTGAGGCC  550

seq1  GGAGGACATCGAGTTTGAGGTCAGCTATCCAGGAAGACTCTTTAGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACATCGAGTTTGAGGTCAGCTATCCAGGAAGACTCTTTAGTATTT  600

seq1  TCCAATTTATTTTGTGGGTTAAGAAAGAAAGACTCTTTAGTATTTTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTATTTTGTGGGTTAAGAAAGAAAGACTCTTTAGTATTTTCCAA  650

seq1  TTTATTTTGTGGGTTAAGAAAGAAGGGAGAAGAAAATAGTTTTCTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGTGGGTTAAGAAAGAAGGGAGAAGAAAATAGTTTTCTCCAGC  700

seq1  CAATTTACCACCAATTTTTCTTGATTACGTTTTTCCATTCTCATAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACCACCAATTTTTCTTGATTACGTTTTTCCATTCTCATAGAAAC  750

seq1  TACCAGGAATCATGTGTGATAACACAATTTCAAGGCATTTCTGAGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAATCATGTGTGATAACACAATTTCAAGGCATTTCTGAGTGATG  800

seq1  TATGTATCTATTCCTACCCCAGATCCATACTTTTTAAAAATTACATAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTATTCCTACCCCAGATCCATACTTTTTAAAAATTACATAGTC  850

seq1  AATTAAAATATAAAAGCTGGATATCTAGTGCCATCCCTTTCTCGAGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATATAAAAGCTGGATATCTAGTGCCATCCCTTTCTCGAGGTGT  900

seq1  GAGGTGGTGGGTGCCACTGTGATGAACAAGGAAGTGATGGGGAGGTGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTGGGTGCCACTGTGATGAACAAGGAAGTGATGGGGAGGTGGAA  950

seq1  AAAATTGGGAACAACAACAAAAAAGGAACAGCGAGAGAGAAAAAAAGAGC  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAATTGGGAACAACAAC-AAAAAGGAACAGCGAGAGAGAAAAAAAGAGC  999

seq1  TACAGACAGAGGCAGAACTGGGGATGTGATGGTAGTGACAGATGAGAGAG  1050
      |||||||||||||||| |||||||||||||||||||||| ||||| ||||
seq2  TACAGACAGAGGCAGACCTGGGGATGTGATGGTAGTGAC-GATGATAGAG  1048

seq1  GGCTGAGGTTGACA-TACTGTCATTGCCTAATAGGGTTGGTGGATGGTAT  1099
      |||||| ||||||| |||||||  ||||||||||||||||| ||||||||
seq2  GGCTGA-GTTGACATTACTGTCCATGCCTAATAGGGTTGGT-GATGGTAT  1096

seq1  GCAACAGC  1107
      || |||||
seq2  GC-ACAGC  1103

seq1: chr4_58190595_58191724
seq2: B6Ng01-194H04.g_68_1179 (reverse)

seq1  CCCCACCCCACACAC-GTAGTCTCCCTGTTTCCCCAGATGGCACGCTGCT  49
           |||||| ||| ||||||| ||||||  ||||||| |||||||| |
seq2  -----CCCCACCCACTGTAGTCTACCTGTT--CCCAGAT-GCACGCTG-T  41

seq1  GCTGGTTACTTGTGACCACGTGCTAGACAATGAAGCCTCGGTGAGATGTG  99
      ||||| ||||| ||||||||| ||||   ||| |||||| ||||||  | 
seq2  GCTGG-TACTT-TGACCACGT-CTAG--CATG-AGCCTC-GTGAGA--TT  82

seq1  GAGGGTTTTTCCTCTTCAGAAATCTGTGGCA-CATATGTGTAACTCCTAT  148
      ||||  ||||||| |||||||||||||| || |||||||   ||||||||
seq2  GAGG--TTTTCCT-TTCAGAAATCTGTGCCACCATATGTTGTACTCCTAT  129

seq1  TTCGAATGAGGAGAAAAGATCGAAA-CCCATACTTGATTGCCTGAAACAA  197
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TTCGAATGA-GAGAAAAGATCGAAACCCCATACTTGATTGCCTGAAACAA  178

seq1  TTAATAA-CCAATGATCCGTTA-CCATTTATATTCAATGAGTAATTGAAT  245
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TTAATAACCCAATGATCCGTTACCCATTTATATTCAATGAGTAATTGAAT  228

seq1  GCAAT-AAAAATAGTCCCCGAG-CCTTTATAAATGCCA-CCAGTGATTTG  292
      ||||| |||||||||||||||| ||||||||||||||| |||||||||||
seq2  GCAATAAAAAATAGTCCCCGAGCCCTTTATAAATGCCACCCAGTGATTTG  278

seq1  CTTTTTGTTGTATTTATTTCGTCAGTGGATATGGGCATAACA-CTGGATC  341
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTTTGTTGTATTTATTTCGTCAGTGGATATGGGCATAACACCTGGATC  328

seq1  CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATATGGGTCC  391
      |    ||||||||||||||||||||||||| || ||||||||||||||||
seq2  C----TTTTTTTTTTTTTTTTTTTTTTTTTATTATTTTCCATATGGGTCC  374

seq1  CAGGGATCTGACTTGTAGATCTTAGCAGCAAGCACTTTTTACTCAATGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCTGACTTGTAGATCTTAGCAGCAAGCACTTTTTACTCAATGAT  424

seq1  TTCTCAGGCCCCATCAGTGATTTTCTAATTCTTTTGTATGTCTTAACCTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGCCCCATCAGTGATTTTCTAATTCTTTTGTATGTCTTAACCTA  474

seq1  TTTGACTCCCATAGTGAGCCTGTGAAGTAAGTACTACTCTCACTGGCCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCCCATAGTGAGCCTGTGAAGTAAGTACTACTCTCACTGGCCAG  524

seq1  AACTCTAAGAACTGTTAGAAGACCGATAATTTGCCTCCAAATCACTCACT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAGAACTGTTAGAAGACCGATAATTTGCCTCCAAATCACTCACT  574

seq1  TAATAGACGATGAAACTAGGATCCAAGTCCAAGAATTCTGAATTTTTATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGACGATGAAACTAGGATCCAAGTCCAAGAATTCTGAATTTTTATG  624

seq1  GCCTAACTTTTAGAAATTAAACCAGTTGTAAGCCTAGGGTTTATATCTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTTTTAGAAATTAAACCAGTTGTAAGCCTAGGGTTTATATCTAA  674

seq1  GCCTGGTTTTCATCCCCAAACTCACTCCCCAGTCCACCCCATTTTTCTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTTTCATCCCCAAACTCACTCCCCAGTCCACCCCATTTTTCTGA  724

seq1  GTCTTAATTCTAGTAAGGTTAGCTAGGAACCCCATCCTCAGAGAAGCTAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATTCTAGTAAGGTTAGCTAGGAACCCCATCCTCAGAGAAGCTAA  774

seq1  TCCTTTTTACTAAAGCCACAGCAATAGGCTCACTTGTAGCCCACTGGAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTACTAAAGCCACAGCAATAGGCTCACTTGTAGCCCACTGGAAA  824

seq1  CTCTTCTTTTGGAATTCCACCAGGGATAACCTGGCTTTTTTGAGCCTCAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTTGGAATTCCACCAGGGATAACCTGGCTTTTTTGAGCCTCAC  874

seq1  AGGTTCTTTGAATATATTGTTATCATTCCTGCCTTACGTTGATTTTTTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTTGAATATATTGTTATCATTCCTGCCTTACGTTGATTTTTTTT  924

seq1  TTTTAACTTGAGAACCTGCCAGGATCATGGCTCAATTTGGCACATATCTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTGAGAACCTGCCAGGATCATGGCTCAATTTGGCACATATCTA  974

seq1  AATCTTCTGTCAACACCTCACATTCTGCCTGGATTCTTTTCTCCAGGTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTGTCAACACCTCACATTCTGCCTGGATTCTTTTCTCCAGGTTC  1024

seq1  ATATTACAATAGGCAAGTTCACCTAACTGAGAACCATACAGTTAAACATC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAATAGGCAAGTTCACCTAACTGAGAACCATACAGTTAAACATC  1074

seq1  CTTATACGCTCGCGGTGCGTTGAGACCACCGATGAATTC  1130
      ||||||||||||||||||| | || ||||||||||||||
seq2  CTTATACGCTCGCGGTGCG-TAAGGCCACCGATGAATTC  1112