gaattctctggtcctgcttgctacccaccataagctgcaaatctgaaatg
ctccaaagtctgaatattttggcacattatgtcactgaaaaatgtttcag
gtttcagagtgtttcaaattccacttattttttttttttggattaaagat
tcttaacctgcagcagaatttagctatagataaatctaatggtgcagaca
gaattctgtataaaattgtgcctcatctccccttgtgcaccactggaaac
aacaatctcttgtctacaaacctcatcttccttgtcagatgaagctatga
tgttgtaaactaatgcatcataaacaaagctaaaatttcagcaatctgtc
accaggtggtgacagagttacagtggtacatggattgagcaatacaaact
gtatgtcacaaacacatattattaatctatgatattatatatgaatatgt
gcatacttgcaatttcaaattattttctagtcactctgtatgctaacttc
aagaagtacataagagagcaaaaccttgggcctctatccctcggaactat
tcctttgctggctggagaccaccttcagtggaacctttcacatttgtata
agaatctctgattcagttcctaccaaggatggagggcatcagagtctctt
ttccccttggagctcaaatactgatattcagttcctcctgtctgcttgaa
gtcatccttccatttttgaaatgtcaagagaaggaaagataaaaacaaga
ggtttcactttctcaaataatttatactccacagctattatttgccaatg
aacaggagaagtttttttcccctcatttctggcaccttctgctctgcttg
catctcaccttttcagacttaatgttttgtgctacatttacatatagcac
caattaaatgagctgcagtcactgtctgctggacacacatgctccatgat
ttcactggctgtcataatcatgttaccatttcaaagcagcccaactgtag
cacacgtcaaatacaagtgctattttgccatcttatatcattgctcattt
cttatgcctttaagattatattattttcatgttttttttctttagcttcc
cataagaacaatctactgatgctatagttt

gaattctatagagtttgaatactgtagcattttaaatgcttatttgagtt
agcaatgtgaacttcagttagtatgggtttttcatggcttaattctaaat
gtaattgctaaacattgttttattatgtggatgcactatatgagtaaaca
tatttcaaaatccatttacatattgaaggatatcttattttctcctactt
tgaggtatatatatatatatatatatatatatatatatatatatatatat
atatatatagatatatatatatatatatgagagagagagagatatatata
tatatatatatatatatatatatatatagagagagagagcgcgcacacac
acactaagagacactaacagacacacacacacacgcacacacacacacac
acacacacacac

seq1: chr2_7632090_7633230
seq2: B6Ng01-194M03.b_46_1175 (reverse)

seq1  AAAC-ATAGACATCAGTAGATTTGTCTTAATGGGAAGCTAAAAGAAAAAA  49
      |||| |||| ||||||||||||  |||| |||||||||| ||||||||||
seq2  AAACTATAG-CATCAGTAGATTGTTCTT-ATGGGAAGCT-AAAGAAAAAA  47

seq1  AACATGAAAATAAATATAATCTTAAAGGCATAAAGAAATGAGCAAATGGA  99
      ||||||||||| ||||||||||||||||||| |||||||||||||   ||
seq2  AACATGAAAAT-AATATAATCTTAAAGGCAT-AAGAAATGAGCAA--TGA  93

seq1  TATAAGAATGGCAAAATAGCAACTTGTATTTGACGTGGTGCTAACAGTTG  149
      |||||| ||||||||||||| ||||||||||||||| ||||| |||||||
seq2  TATAAG-ATGGCAAAATAGC-ACTTGTATTTGACGT-GTGCT-ACAGTTG  139

seq1  GGCTGCTTTGAAATGGTAACATGATTATGACAGCCAGTGAAATCATGGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTTGAAATGGTAACATGATTATGACAGCCAGTGAAATCATGGAG  189

seq1  CATGTGTGTCCAGCAGACAGTGACTGCAGCTCATTTAATTGGTGCTATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTCCAGCAGACAGTGACTGCAGCTCATTTAATTGGTGCTATAT  239

seq1  GTAAAATGTAGCACAAAACATTAAGTCTGAAAAGGTGAGATGCAAGCAGA  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-AAATGTAGCACAAAACATTAAGTCTGAAAAGGTGAGATGCAAGCAGA  288

seq1  GCAGAAGGTGCCAGAAATGAGGGGAAAAAAACTTCTCCTGTTCATTGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGTGCCAGAAATGAGGGGAAAAAAACTTCTCCTGTTCATTGGCA  338

seq1  AATAATAGCTGTGGAGTATAAATTATTTGAGAAAGTGAAACCTCTTGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGCTGTGGAGTATAAATTATTTGAGAAAGTGAAACCTCTTGTTT  388

seq1  TTATCTTTCCTTCTCTTGACATTTCAAAAATGGAAGGATGACTTCAAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCCTTCTCTTGACATTTCAAAAATGGAAGGATGACTTCAAGCA  438

seq1  GACAGGAGGAACTGAATATCAGTATTTGAGCTCCAAGGGGAAAAGAGACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGGAACTGAATATCAGTATTTGAGCTCCAAGGGGAAAAGAGACT  488

seq1  CTGATGCCCTCCATCCTTGGTAGGAACTGAATCAGAGATTCTTATACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCCATCCTTGGTAGGAACTGAATCAGAGATTCTTATACAAA  538

seq1  TGTGAAAGGTTCCACTGAAGGTGGTCTCCAGCCAGCAAAGGAATAGTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGGTTCCACTGAAGGTGGTCTCCAGCCAGCAAAGGAATAGTTCC  588

seq1  GAGGGATAGAGGCCCAAGGTTTTGCTCTCTTATGTACTTCTTGAAGTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATAGAGGCCCAAGGTTTTGCTCTCTTATGTACTTCTTGAAGTTAG  638

seq1  CATACAGAGTGACTAGAAAATAATTTGAAATTGCAAGTATGCACATATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAGTGACTAGAAAATAATTTGAAATTGCAAGTATGCACATATTC  688

seq1  ATATATAATATCATAGATTAATAATATGTGTTTGTGACATACAGTTTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATATCATAGATTAATAATATGTGTTTGTGACATACAGTTTGTA  738

seq1  TTGCTCAATCCATGTACCACTGTAACTCTGTCACCACCTGGTGACAGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAATCCATGTACCACTGTAACTCTGTCACCACCTGGTGACAGATT  788

seq1  GCTGAAATTTTAGCTTTGTTTATGATGCATTAGTTTACAACATCATAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATTTTAGCTTTGTTTATGATGCATTAGTTTACAACATCATAGCT  838

seq1  TCATCTGACAAGGAAGATGAGGTTTGTAGACAAGAGATTGTTGTTTCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGACAAGGAAGATGAGGTTTGTAGACAAGAGATTGTTGTTTCCAG  888

seq1  TGGTGCACAAGGGGAGATGAGGCACAATTTTATACAGAATTCTGTCTGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACAAGGGGAGATGAGGCACAATTTTATACAGAATTCTGTCTGCA  938

seq1  CCATTAGATTTATCTATAGCTAAATTCTGCTGCAGGTTAAGAATCTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGATTTATCTATAGCTAAATTCTGCTGCAGGTTAAGAATCTTTAA  988

seq1  TCCAAAAAAAAAAAATAAGTGGAATTTGAAACACTCTGAAACCTGAAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAAAAAAAATAAGTGGAATTTGAAACACTCTGAAACCTGAAACA  1038

seq1  TTTTTCAGTGACATAATGTGCCAAAATATTCAGACTTTGGAGCATTTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTGACATAATGTGCCAAAATATTCAGACTTTGGAGCATTTCAG  1088

seq1  ATTTGCAGCTTATGGTGGGTAGCAAGCAGGACCAGAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGCTTATGGTGGGTAGCAAGCAGGACCAGAGAATTC  1130

seq1: chr4_30054928_30055244
seq2: B6Ng01-194M03.g_269_476

seq1  GTATATATATATACATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GTATATATATAT--ATATATATATATATATATATATATATATATATATAT  48

seq1  ATATATGGAGAGAGAGAGACAGACAGTCATAGACTTAGAGAGAAATAGAT  100
      |||||| || | | | | | | | | | | |||   ||||||| ||| ||
seq2  ATATATAGATATATATATATATATA-TGAGAGA--GAGAGAGATATATAT  95

seq1  AGACCTAGAGTAGAATTTTGAAAACTCAAAGCCAGAGACACACCTTCTCT  150
      | |  || | || |  | |  | |   | ||  ||||| |      | | 
seq2  ATATATATA-TATATATATATATATATATAGAGAGAGAGA-----GCGCG  139

seq1  AACAAGGCCACAGCCACTACTTCCTCTGAGATAGTTCCAATAACTGGAGA  200
       |||    ||||  |||||         ||| |    || ||||   |||
seq2  CACA----CACA--CACTA---------AGAGA----CACTAAC---AGA  167

seq1  CCAAGTATTCAATCATATGAGCTTATGGAAGTCATTCTCATTCAACACAC  250
      |                                           ||||| 
seq2  C-------------------------------------------ACACA-  173

seq1  CACAGTCTCTAACATGCCTGTGAGCGCACACGCGCGCGCGCACACACACA  300
                                ||||      | ||||||||||||
seq2  --------------------------CACA------CACGCACACACACA  191

seq1  CACACACACACACACAC  317
      |||||||||||||||||
seq2  CACACACACACACACAC  208