BAC Information

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BAC

Clone NameB6Ng01-195E01
Chromosome13 (Build37)4 (Build37)
Map Location 84,094,950 - 84,096,1048,329,594 - 8,330,271
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik
Downstream geneLOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195E01.bB6Ng01-195E01.g
ACCGA017723GA017724
length1,158962
definitionB6Ng01-195E01.b B6Ng01-195E01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,094,950 - 84,096,104)(8,329,594 - 8,330,271)
sequence
gaattcatgctttgggaaagacatgtgaaaaaggtttttaaaaaccccaa
aaccaaactccgtcaaagttctgcctctgttgagagtccaaggatggtga
agactggagggcacagtgcagagagatgtgctgggaaaggaaaggcagac
cttgggcaaacagtcagaagagtaaaccaaccaagtgccacaaaccattc
agaaagtccatcacagaccatgaaaaatggccaatttgatgtaaataaaa
ttctcaataggggagattttacttctcatatgcaaacaactttatggctg
ctgaaatgttaaaagaaaacactgtatttgccaactttcattctgtaagt
actgttgaaactatttcaggcttttcaagtcacgtcatttccccagtatc
aaagaattaaaacacaaaaacaaaacagcaaaaacaaagaaaatcaagtg
tcactatgatgccacagagaggagctggcaggcagatgccagtaaatgag
atatacaaagaactagggagaattcttctagctctggcctcttctcccct
tcagctgctcgagtctgtctaacttgtctagacattaaaataaactgaat
cattatgtggcgctccttctaaaggaggctaatgagttcttaattgcaag
atttcgtgtcggagttggggattctacattctcatgtacatggaagtcca
cagagagatggattggcttcaaggcattctgccttgcttcactctcagag
ggatgaagctagtccaccctcagctgaaacttctgaaaccaaggacagaa
taaatatttctacctttaagttatatttttagacattttgtcacagtaac
agaaaaatgatattacagaatgtattacaattttcttgtaagtacacagg
tttccaatgtgctgctgtcactgagattactataataacttaaattttac
tggagatagaggcacttaaacacaattctatcttcttgtatttaaaacta
ttcaccaagaaagttggtgtcacgtgaagcaactgtttctcctttctatg
gtacttctaattcaaccaaagatggcctttttctttttctttttaaaatt
gtatgttttaatgtatctaacattcattttttcttatttaactatttcaa
tgttatcc
gaattcatcttggaagactttacctttgatgagcatcaagtgcccctcct
tgtcttttttgataactttgggttggaatttgactttattcgatattaga
atggctactccagcttgtttctttggaccatttgcttggaaaattgcttc
cagccttttactctgaggtagtgcctgtctttgtccctgagatgggtttc
ctctatgcacaaaatattggatcctatttatgtagacagtctgtaagtct
atttctctttatttggaaattgagtccattgatattaagagatattaagt
caaagtcgttgcttcctgttatttatgttgttagatttgggattctgttc
ttgtggctatcttcttttaggtttgttgaaggattacttccttgcttttt
ctagggcctaatttccctccttgtgttggaattttccctttattatcctt
tgaagggccggattcatggaaagatattgtgtgaatttcgttttgtcatg
gaatactttggtttcttcatctatggtaattgagagttttgctgggtata
gtagcctgggctggcatttgtgttctcttagtgtctatataacatctgtc
caggatcttctggctttcttagtctctgctgagaagtctggtgtaactct
aatagatctgcctttatatcttacttgacattttttccttagtgtatttt
tttttctctccagcccaaaatggcttttttatttgaaaaaattacagttc
ccatatgccccccaaagctgcatttatctctttattcatttatttttaat
ggttcaacaaattttttttaaatctttatgagctatcttgttgaattttt
ctttcttttttattagatatttttaatataaatttcaaatgctatcccaa
agaatccctttacccccacccccacccccacgccccagccgccctgtttc
ctacccagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84094950_84096104
seq2: B6Ng01-195E01.b_42_1199

seq1  GAATTCATGCTTTGGGAAAGACATGTGAAAAAGGTTTTTAAAAACCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTTGGGAAAGACATGTGAAAAAGGTTTTTAAAAACCCCAA  50

seq1  AACCAAACTCCGTCAAAGTTCTGCCTCTGTTGAGAGTCCAAGGATGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTCCGTCAAAGTTCTGCCTCTGTTGAGAGTCCAAGGATGGTGA  100

seq1  AGACTGGAGGGCACAGTGCAGAGAGATGTGCTGGGAAAGGAAAGGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAGGGCACAGTGCAGAGAGATGTGCTGGGAAAGGAAAGGCAGAC  150

seq1  CTTGGGCAAACAGTCAGAAGAGTAAACCAACCAAGTGCCACAAACCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCAAACAGTCAGAAGAGTAAACCAACCAAGTGCCACAAACCATTC  200

seq1  AGAAAGTCCATCACAGACCATGAAAAATGGCCAATTTGATGTAAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCCATCACAGACCATGAAAAATGGCCAATTTGATGTAAATAAAA  250

seq1  TTCTCAATAGGGGAGATTTTACTTCTCATATGCAAACAACTTTATGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATAGGGGAGATTTTACTTCTCATATGCAAACAACTTTATGGCTG  300

seq1  CTGAAATGTTAAAAGAAAACACTGTATTTGCCAACTTTCATTCTGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTTAAAAGAAAACACTGTATTTGCCAACTTTCATTCTGTAAGT  350

seq1  ACTGTTGAAACTATTTCAGGCTTTTCAAGTCACGTCATTTCCCCAGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAAACTATTTCAGGCTTTTCAAGTCACGTCATTTCCCCAGTATC  400

seq1  AAAGAATTAAAACACAAAAACAAAACAGCAAAAACAAAGAAAATCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTAAAACACAAAAACAAAACAGCAAAAACAAAGAAAATCAAGTG  450

seq1  TCACTATGATGCCACAGAGAGGAGCTGGCAGGCAGATGCCAGTAAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGATGCCACAGAGAGGAGCTGGCAGGCAGATGCCAGTAAATGAG  500

seq1  ATATACAAAGAACTAGGGAGAATTCTTCTAGCTCTGGCCTCTTCTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAAGAACTAGGGAGAATTCTTCTAGCTCTGGCCTCTTCTCCCCT  550

seq1  TCAGCTGCTCGAGTCTGTCTAACTTGTCTAGACATTAAAATAAACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCTCGAGTCTGTCTAACTTGTCTAGACATTAAAATAAACTGAAT  600

seq1  CATTATGTGGCGCTCCTTCTAAAGGAGGCTAATGAGTTCTTAATTGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTGGCGCTCCTTCTAAAGGAGGCTAATGAGTTCTTAATTGCAAG  650

seq1  ATTTCGTGTCGGAGTTGGGGATTCTACATTCTCATGTACATGGAAGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTGTCGGAGTTGGGGATTCTACATTCTCATGTACATGGAAGTCCA  700

seq1  CAGAGAGATGGATTGGCTTCAAGGCATTCTGCCTTGCTTCACTCTCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATGGATTGGCTTCAAGGCATTCTGCCTTGCTTCACTCTCAGAG  750

seq1  GGATGAAGCTAGTCCACCCTCAGCTGAAACTTCTGAAACCAAGGACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGCTAGTCCACCCTCAGCTGAAACTTCTGAAACCAAGGACAGAA  800

seq1  TAAATATTTCTACCTTTAAGTTATATTTTTAGACATTTTGTCACAGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTCTACCTTTAAGTTATATTTTTAGACATTTTGTCACAGTAAC  850

seq1  AGAAAAATGATATTACAGAATGTATTACAATTTTCTTGTAAGTACACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGATATTACAGAATGTATTACAATTTTCTTGTAAGTACACAGG  900

seq1  TTTCCAATGTGCTGCTGTCACTGAGATTACTATAATAACTTAAATTTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGTGCTGCTGTCACTGAGATTACTATAATAACTTAAATTTTAC  950

seq1  TGGAGATAGAGGCACTTAAACACAATTCTATCTTCTTGTATTTAAAACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAGAGGCACTTAAACACAATTCTATCTTCTTGTATTTAAAACTA  1000

seq1  TTCACCAAGAAAGTTGGTGTCACGTGAAAGCAACTGTTTCTCCTTTCTAT  1050
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCACCAAGAAAGTTGGTGTCACGTG-AAGCAACTGTTTCTCCTTTCTAT  1049

seq1  GGTACTTCTAATTCAACCAAAGATGGCCTTTT--CTTTTCTTTTT-AAAT  1097
      ||||||||||||||||||||||||||||||||   |||||||||| ||||
seq2  GGTACTTCTAATTCAACCAAAGATGGCCTTTTTCTTTTTCTTTTTAAAAT  1099

seq1  TGTATGTTTT-ATGTATCT-ACATTTCTTTTTTCTTTATTTACATTTTCA  1145
      |||||||||| |||||||| |||||  ||||||| |||||||  | ||  
seq2  TGTATGTTTTAATGTATCTAACATTCATTTTTTC-TTATTTAACTATTTC  1148

seq1  AATGTTATCC  1155
      ||||||||||
seq2  AATGTTATCC  1158

seq1: chr4_8329594_8330271
seq2: B6Ng01-195E01.g_72_743 (reverse)

seq1  GTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTTTCA  50
      ||||||||| ||||||||||||  |||| ||| ||||||||||||| |||
seq2  GTCAAGTAAGATATAAAGGCAGATCTATTAGAGTTACACCAGACTTCTCA  50

seq1  CCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACT  100
       ||||||||| ||||||||||||| ||||||||||||||||| |||||||
seq2  GCAGAGACTAAGAAAGCCAGAAGATCCTGGACAGATGTTATATAGACACT  100

seq1  AAGAGAACACAAATTCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAA  150
      |||||||||||||| ||||||||||||||||||||| || ||||||||||
seq2  AAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCAAAACTCTCAA  150

seq1  TTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACA  200
      |||||||||||| |||||||||||||||||| |||||||| |||||||||
seq2  TTACCATAGATGAAGAAACCAAAGTATTCCATGACAAAACGAAATTCACA  200

seq1  CATTATCTTTCCACAAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAA  250
      || ||||||||||  ||||| ||||||||||||||||||| ||  |||| 
seq2  CAATATCTTTCCATGAATCCGGCCCTTCAAAGGATAATAA-AGGGAAAAT  249

seq1  ACTAATAGAAGGACGGAAATCATGCCCTAGAAAAAGCAAGAAAGTAATCC  300
       | || | ||||| |||||| | ||||||||||||||||| |||||||||
seq2  TCCAACACAAGGAGGGAAATTAGGCCCTAGAAAAAGCAAGGAAGTAATCC  299

seq1  TTCAACAAACCTAAAAGAAGACAGCCGCAAGAACAGAATCCCAACTTTAA  350
      ||||||||||||||||||||| |||| ||||||||||||||||| | |||
seq2  TTCAACAAACCTAAAAGAAGATAGCCACAAGAACAGAATCCCAAATCTAA  349

seq1  TAACAAAAATAACAGGAAGCAACAATTACTTTTCCTAAATATCTCTTAAT  400
       |||| |||||||||||||||||    |||||  || |||||||||||||
seq2  CAACATAAATAACAGGAAGCAAC---GACTTTGACTTAATATCTCTTAAT  396

seq1  ATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACACCCTGGCT  450
      |||||||||||||||| || |||||| ||| ||||||| |||  ||| ||
seq2  ATCAATGGACTCAATTTCCAAATAAAGAGAAATAGACTTACAGACTGTCT  446

seq1  ACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGG  500
      ||| ||| |||| |||| ||| || ||| || ||||||||||||||||||
seq2  ACATAAATAGGATCCAATATTTTG-TGCATAGAGGAAACCCATCTCAGGG  495

seq1  AAAAAGATAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAA  550
      | ||||| || |||||||||||||| ||||||||| || |||||||||||
seq2  ACAAAGACAGGCACTACCTCAGAGTAAAAGGCTGG-AAGCAATTTTCCAA  544

seq1  GCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAA  600
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGTCCAAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAA  594

seq1  CATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGAAGGGACACTTCA  650
        || | |||||||||||||||||||||||||||||| |||| ||||| |
seq2  AGTCAAATTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTGA  644

seq1  TACTCATCAAAGGTAAATTCCTCCAAGA  678
      | ||||||||||||||| || |||||||
seq2  TGCTCATCAAAGGTAAAGTCTTCCAAGA  672