BAC Information

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BAC

Clone NameB6Ng01-195N17
Chromosome4 (Build37)
Map Location 107,068,975 - 107,199,086
singlet/doubletdoublet
Overlap geneTmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195N17.bB6Ng01-195N17.g
ACCGA018159GA018160
length359227
definitionB6Ng01-195N17.b B6Ng01-195N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,198,728 - 107,199,086)(107,068,975 - 107,069,201)
sequence
ccagcattcctgcccagccggcagcatttgggtgtgcacagcacccccaa
atcagctcatcggggccttgtgggaaggaccgggtcagattcccttctgg
tcctggcccctcagcacagcaggtcccagatagtgtctactaagtgagga
agaagggatgaatggcctgggagtgaggcagcaggacccccctaaaaggc
ttacccactacccgggcatgctacaagcagctactctgctggccctcact
ggtggccactgagaccaagctgctctctgctggactgataggggggccct
aggagcaagatccctaaacccgcaagcaagggcaagggagggttcggggg
gcggggggg
aggtagatagtccaggctgttttgttcaagtgcggggacctgtttttggg
acaggagctcatgtatctcagaccattcagactggccttaaactcactgt
atgccaaggacagtctagaatgtctgacccttctgtctctatctcccaag
tgctagagcactgggtaaaagccactgtactccactgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107198728_107199086
seq2: B6Ng01-195N17.b_55_413 (reverse)

seq1  CCCCCCCGCCCCCCGAACCCTCCCTTGCCCTTGCTTGCGGGTTTAGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGCCCCCCGAACCCTCCCTTGCCCTTGCTTGCGGGTTTAGGGAT  50

seq1  CTTGCTCCTAGGGCCCCCCTATCAGTCCAGCAGAGAGCAGCTTGGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCTAGGGCCCCCCTATCAGTCCAGCAGAGAGCAGCTTGGTCTCA  100

seq1  GTGGCCACCAGTGAGGGCCAGCAGAGTAGCTGCTTGTAGCATGCCCGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACCAGTGAGGGCCAGCAGAGTAGCTGCTTGTAGCATGCCCGGGT  150

seq1  AGTGGGTAAGCCTTTTAGGGGGGTCCTGCTGCCTCACTCCCAGGCCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGCCTTTTAGGGGGGTCCTGCTGCCTCACTCCCAGGCCATTC  200

seq1  ATCCCTTCTTCCTCACTTAGTAGACACTATCTGGGACCTGCTGTGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTTCCTCACTTAGTAGACACTATCTGGGACCTGCTGTGCTGAG  250

seq1  GGGCCAGGACCAGAAGGGAATCTGACCCGGTCCTTCCCACAAGGCCCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGACCAGAAGGGAATCTGACCCGGTCCTTCCCACAAGGCCCCGA  300

seq1  TGAGCTGATTTGGGGGTGCTGTGCACACCCAAATGCTGCCGGCTGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGATTTGGGGGTGCTGTGCACACCCAAATGCTGCCGGCTGGGCAG  350

seq1  GAATGCTGG  359
      |||||||||
seq2  GAATGCTGG  359

seq1: chr4_107068975_107069201
seq2: B6Ng01-195N17.g_72_298

seq1  AGGTAGATAGTCCAGGCTGTTTTGTTCAAGTGCGGGGACCTGTTTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATAGTCCAGGCTGTTTTGTTCAAGTGCGGGGACCTGTTTTTGGG  50

seq1  ACAGGAGCTCATGTATCTCAGACCATTCAGACTGGCCTTAAACTCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGCTCATGTATCTCAGACCATTCAGACTGGCCTTAAACTCACTGT  100

seq1  ATGCCAAGGACAGTCTAGAATGTCTGACCCTTCTGTCTCTATCTCCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGGACAGTCTAGAATGTCTGACCCTTCTGTCTCTATCTCCCAAG  150

seq1  TGCTAGAGCACTGGGTAAAAGCCACTGTACTCCACTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGCACTGGGTAAAAGCCACTGTACTCCACTGTGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTG  227
      |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTG  227