BAC Information

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BAC

Clone NameB6Ng01-197A14
Chromosome4 (Build37)
Map Location 71,198,436 - 71,350,037
singlet/doubletdoublet
Overlap geneLOC667638
Upstream geneLOC100039565, LOC100039979
Downstream geneEG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197A14.bB6Ng01-197A14.g
ACCGA019015GA019016
length1,0781,139
definitionB6Ng01-197A14.b B6Ng01-197A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,198,436 - 71,199,512)(71,348,892 - 71,350,037)
sequence
gaattcagtgaaccttgaagatatatgcaaatctgttctattggcctgag
atgaggaggtttctcttatgataaaactaaatcaaatagattcagcaaaa
tcccttgcagcaatgccaataaagagctagataagacctgaagtccctac
ttaatttttttcttaatactctgttaacagtcctatcaggtcccatgact
aaataagatatgaaaagcaacttctgtcattggcagttccctcataaaag
cctcctgtcgccccgtagtcactgatactcattgtaatctcatttggaaa
taaccaagtgtactttagaaacaactgtctaattttccttatatttacaa
aggctttttttttttatcagtttgacatagtatttaatttttttcctttc
tttatgtttttattaggtattttcttcatttacattccaatgctatctca
aaagtccccccatacacccccactcccacttcttggccctggcattcccc
cacactgaggcatataaagtacaaaggcttttaaaagttttttttcttta
ttgtgtttgtaactttctttaggattatgtaaataaatatctatccattc
cagatttccagatattgtactaacataagaccatttttttattcagtcta
aatgactgcaccatttgttgtaatgggttatttaaagtagtacggatgac
tcaaaagcaactttatcaccagaagtttgaccccagcatggttcatgact
cacaaaagctccgttcctggaacttcctgaacatgttgcagataactcag
ccagttggagcttctcctacattcagtaactattaatgttcaaataactt
taaagagaggtttcttacacatttttggagaatcccaaggcttgtaggtt
ctgtttaccttctgagaattttcttttagatagacaacactccacttctt
ttcttccaggtaattctatttcttttttgagcctctaagatcctccctat
gattggagtttgtgttttatgaccagatgaagttgacaacagctcctaaa
tatatgcatgaccaaaatgttagaaggc

gaattcactacatagggtaggctgggttggaaatcatagagatctatctg
cctgcctctacctcctggaattaaaggcatatgttgccacacccagctta
ttttattatttttttcagtcaaagtatcactatataacattggctggcag
ggaactcatagagattgatacacatgcctctgcctaatagagagttttct
aactatttagaaatttttaaattatcagacatagtcttagaatttcatct
ttgcaaatctccccttctcaaacttgtcttataagtagttacccaacttt
tctatgtcaatgatatgcacaatctacataaatatcatttaacttttgta
atctgacctactcacttaaaaatgtttacagataaaaaacatcctctatc
aaataattctaggagagtatatacatacttgtctgagtgtaaactttaaa
tacctgaaataagaaaacaaaggatcttattaaatttataaagggaatta
tttttgatatactgagtggcatatttaaccaactcagcatagctactgac
aataacatcattatctctgatagatatcgatgaccttcagtattaataag
acatgaggtttagagtttgattcccctataacctctttgaaaaagaatta
tcagagaagcctaccatgtgtaaatatttatttttaaacaaactcaaaag
tgaatcctggctctcagtgctttaagagctttccaatggcattttgcatg
aaagaatcagagatgatcactttagtgctagaactcatgtaaccaagggc
aaggtagaagctaactttcctgagaatcaaaaccactatgtgagaatcct
atgtatggaatactgtcctagatacaagtattttagtatcttatatacag
cagtctactttaatttatattgctgtaataaatattctggcgtaatcaat
tgtgggaagaaagtttattttagtttatactttccaggtcacagtcatca
ttgatatcaaataacaatcagatataccccacagcatatctctggcctat
ctgatgtagcagtcttccactgggaactcccttcacaatgtgacttagcc
ttggtgagttacagttaacaagttaagaacctctggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71198436_71199512
seq2: B6Ng01-197A14.b_48_1125

seq1  GAATTCAGTGAACCTTGAAGATATATGCAAATCTGTTCTATTGGCCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAACCTTGAAGATATATGCAAATCTGTTCTATTGGCCTGAG  50

seq1  ATGAGGAGGTTTCTCTTATGATAAAACTAAATCAAATAGATTCAGCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGGTTTCTCTTATGATAAAACTAAATCAAATAGATTCAGCAAAA  100

seq1  TCCCTTGCAGCAATGCCAATAAAGAGCTAGATAAGACCTGAAGTCCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCAGCAATGCCAATAAAGAGCTAGATAAGACCTGAAGTCCCTAC  150

seq1  TTAATTTTTTTCTTAATACTCTGTTAACAGTCCTATCAGGTCCCATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTCTTAATACTCTGTTAACAGTCCTATCAGGTCCCATGACT  200

seq1  AAATAAGATATGAAAAGCAACTTCTGTCATTGGCAGTTCCCTCATAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATATGAAAAGCAACTTCTGTCATTGGCAGTTCCCTCATAAAAG  250

seq1  CCTCCTGTCGCCCCGTAGTCACTGATACTCATTGTAATCTCATTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTCGCCCCGTAGTCACTGATACTCATTGTAATCTCATTTGGAAA  300

seq1  TAACCAAGTGTACTTTAGAAACAACTGTCTAATTTTCCTTATATTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGTGTACTTTAGAAACAACTGTCTAATTTTCCTTATATTTACAA  350

seq1  AGGCTTTTTTTTTTTATCAGTTTGACATAGTATTTAATTTTTTTCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTTTTTTTTATCAGTTTGACATAGTATTTAATTTTTTTCCTTTC  400

seq1  TTTATGTTTTTATTAGGTATTTTCTTCATTTACATTCCAATGCTATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTTTATTAGGTATTTTCTTCATTTACATTCCAATGCTATCTCA  450

seq1  AAAGTCCCCCCATACACCCCCACTCCCACTTCTTGGCCCTGGCATTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCCCATACACCCCCACTCCCACTTCTTGGCCCTGGCATTCCCC  500

seq1  CACACTGAGGCATATAAAGTACAAAGGCTTTTAAAAGTTTTTTTTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAGGCATATAAAGTACAAAGGCTTTTAAAAGTTTTTTTTCTTTA  550

seq1  TTGTGTTTGTAACTTTCTTTAGGATTATGTAAATAAATATCTATCCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGTAACTTTCTTTAGGATTATGTAAATAAATATCTATCCATTC  600

seq1  CAGATTTCCAGATATTGTACTAACATAAGACCATTTTTTTATTCAGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCCAGATATTGTACTAACATAAGACCATTTTTTTATTCAGTCTA  650

seq1  AATGACTGCACCATTTGTTGTAATGGGTTATTTAAAGTAGTACGGATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGCACCATTTGTTGTAATGGGTTATTTAAAGTAGTACGGATGAC  700

seq1  TCAAAAGCAACTTTATCACCAGAAGTTTGACCCCAGCATGGTTCATGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCAACTTTATCACCAGAAGTTTGACCCCAGCATGGTTCATGACT  750

seq1  CACAAAAGCTCCGTTCCTGGAACTTCCTGAACATGTTGCAGATAACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGCTCCGTTCCTGGAACTTCCTGAACATGTTGCAGATAACTCAG  800

seq1  CCAGTTGGAGCTTCTCCTACATTCAGTAACTATTAATGTTCAAATAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGAGCTTCTCCTACATTCAGTAACTATTAATGTTCAAATAACTT  850

seq1  TAAAGAGAGGTTTCTTACACATTTTTGGAGAATCCCAAGGCTTGTAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGGTTTCTTACACATTTTTGGAGAATCCCAAGGCTTGTAGGTT  900

seq1  CTGTTTACCTTCTGAGAA-TTTCTTTTAGATAGACAACACTCCACTTCTT  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTTTACCTTCTGAGAATTTTCTTTTAGATAGACAACACTCCACTTCTT  950

seq1  T--CTCCAGGT-ATTCTATT--CTTTTTGAGCCTCTAAGATCCTCCCTAT  994
      |   ||||||| ||||||||   |||||||||||||||||||||||||||
seq2  TTCTTCCAGGTAATTCTATTTCTTTTTTGAGCCTCTAAGATCCTCCCTAT  1000

seq1  GATTTGGAGTTTGTGTTTTTATGACAAGATGAAGTTGACAACAGCTCTAA  1044
      || |||||||||||| ||||||||| |||||||||||||||||||||  |
seq2  GA-TTGGAGTTTGTG-TTTTATGACCAGATGAAGTTGACAACAGCTCCTA  1048

seq1  AATTATATGCATGAACAAAAATGTTTAGAAGGC  1077
      || |||||||||| || |||||| |||||||||
seq2  AA-TATATGCATG-ACCAAAATG-TTAGAAGGC  1078


seq1: chr4_71348892_71350037
seq2: B6Ng01-197A14.g_70_1208 (reverse)

seq1  AATCCAGATGTCCT--ACTTGGTTTTAACTGTAAACTTCACAAGGCCTAA  48
      |||||||| || ||  |||||   |||||||| ||||   ||||||   |
seq2  AATCCAGAGGTTCTTAACTTG---TTAACTGT-AACTCACCAAGGC--TA  44

seq1  AGTCACA-TGTGAAGGGAG-TCTCAGTGGAAAGACTGCCTACATCAGATT  96
      ||||||| ||||||||||| || |||||| ||||||| ||||||||||| 
seq2  AGTCACATTGTGAAGGGAGTTCCCAGTGG-AAGACTG-CTACATCAGATA  92

seq1  AGCCAGAAGATATGCCTGTGGGGTATTATTCTGATTGTTATTTGATATCA  146
       ||||| ||||||| |||||||||||   |||||||||||||||||||||
seq2  GGCCAG-AGATATG-CTGTGGGGTAT--ATCTGATTGTTATTTGATATCA  138

seq1  ATGATGAACTGTGACCTGG-AAGTATAAACT-AAATAAACTTTCTTCCCA  194
      |||||| |||||||||||| ||||||||||| ||||||||||||||||||
seq2  ATGATG-ACTGTGACCTGGAAAGTATAAACTAAAATAAACTTTCTTCCCA  187

seq1  CAATTGATTACGCCAGAATATTTTATTACAGCAATATAAATTAAAGTAGA  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAATTGATTACGCCAGAATA-TTTATTACAGCAATATAAATTAAAGTAGA  236

seq1  CTGCTGTATATAAGATACTAAAATACTTGTATCTAGGACAGTATTCCATA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTATATAAGATACTAAAATACTTGTATCTAGGACAGTATTCCATA  286

seq1  CATAGGATTCTCACATAGTGGTTTTGATTCTCAGGAAAGTTAGCTTCTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATTCTCACATAGTGGTTTTGATTCTCAGGAAAGTTAGCTTCTAC  336

seq1  CTTG-CCTTGGTTACATGAGTTCTAGCACTAAAGTGATCATCTCTGATTC  393
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTTGGTTACATGAGTTCTAGCACTAAAGTGATCATCTCTGATTC  386

seq1  TTTCATGCAAAATGCCATTGGAAAGCTCTTAAAGCACTGAGAGCCAGGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCAAAATGCCATTGGAAAGCTCTTAAAGCACTGAGAGCCAGGAT  436

seq1  TCACTTTTGAGTTTGTTTAAAAATAAATATTTACACATGGTAGGCTTCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTGAGTTTGTTTAAAAATAAATATTTACACATGGTAGGCTTCTC  486

seq1  TGATAATTCTTTTTCAAAGAGGTTATAGGGGAATCAAACTCTAAACCTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTCTTTTTCAAAGAGGTTATAGGGGAATCAAACTCTAAACCTCA  536

seq1  TGTCTTATTAATACTGAAGGTCATCGATATCTATCAGAGATAATGATGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATTAATACTGAAGGTCATCGATATCTATCAGAGATAATGATGTT  586

seq1  ATTGTCAGTAGCTATGCTGAGTTGGTTAAATATGCCACTCAGTATATCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGTAGCTATGCTGAGTTGGTTAAATATGCCACTCAGTATATCAA  636

seq1  AAATAATTCCCTTTATAAATTTAATAAGATCCTTTGTTTTCTTATTTCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCCCTTTATAAATTTAATAAGATCCTTTGTTTTCTTATTTCAG  686

seq1  GTATTTAAAGTTTACACTCAGACAAGTATGTATATACTCTCCTAGAATTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAGTTTACACTCAGACAAGTATGTATATACTCTCCTAGAATTA  736

seq1  TTTGATAGAGGATGTTTTTTATCTGTAAACATTTTTAAGTGAGTAGGTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGAGGATGTTTTTTATCTGTAAACATTTTTAAGTGAGTAGGTCA  786

seq1  GATTACAAAAGTTAAATGATATTTATGTAGATTGTGCATATCATTGACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAAAAGTTAAATGATATTTATGTAGATTGTGCATATCATTGACAT  836

seq1  AGAAAAGTTGGGTAACTACTTATAAGACAAGTTTGAGAAGGGGAGATTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTGGGTAACTACTTATAAGACAAGTTTGAGAAGGGGAGATTTG  886

seq1  CAAAGATGAAATTCTAAGACTATGTCTGATAATTTAAAAATTTCTAAATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGAAATTCTAAGACTATGTCTGATAATTTAAAAATTTCTAAATA  936

seq1  GTTAGAAAACTCTCTATTAGGCAGAGGCATGTGTATCAATCTCTATGAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAACTCTCTATTAGGCAGAGGCATGTGTATCAATCTCTATGAGT  986

seq1  TCCCTGCCAGCCAATGTTATATAGTGATACTTTGACTGAAAAAAATAATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCAGCCAATGTTATATAGTGATACTTTGACTGAAAAAAATAATA  1036

seq1  AAATAAGCTGGGTGTGGCAACATATGCCTTTAATTCCAGGAGGTAGAGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTGGGTGTGGCAACATATGCCTTTAATTCCAGGAGGTAGAGGC  1086

seq1  AGGCAGATAGATCTCTATGATTTCCAACCCAGCCTACCCTATGTAGTGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATAGATCTCTATGATTTCCAACCCAGCCTACCCTATGTAGTGAA  1136

seq1  TTC  1146
      |||
seq2  TTC  1139


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