BAC Information

Click to search

BAC

Clone NameB6Ng01-197D09
Chromosome4 (Build37)
Map Location 151,374,659 - 151,520,582
singlet/doubletdoublet
Overlap geneKlhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn
Upstream geneUts2, Per3, Vamp3, Camta1, LOC100041960, Dnajc11, Thap3, Phf13
Downstream geneLOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197D09.bB6Ng01-197D09.g
ACCGA019137GA019138
length1,180226
definitionB6Ng01-197D09.b B6Ng01-197D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,519,413 - 151,520,582)(151,374,659 - 151,374,884)
sequence
gaattctccagggccacagagttcaataaaaggaccccacagcctagcca
cagcctagccccaaagctgtggctccctactctttcagggcttcctggcc
tgctgtgaagggttgtaaattattcagaagagctcagctctctctggtgc
ctcagtgaaggaggaagggtgccatccctacccgtgggaaactcgatcct
gcccagggagactgtgggtaagcatgggccatggtgctgacaggtcacag
caactctggagggccaggcagctttgggaagggcctgtgaacaccggttg
tgccccagtgaacaccggttatgacttggggcactgcacagagcttgccg
gtgcaggaacgcgctgcactctttttctagtctaccccagttcattgaac
tgaatctttccagaagcagaagttgccattgaacacctccctctttctcc
tctcagtaccccacagaaaggagaccccctaatctgagagtcctgggggc
tatgcctaggagtgagggagacgggtgggctgacagtcctcctggataag
gacacaagtggcacactgtacatataatgtctgcaaccccacctggggca
actgaaaagcctcgaggggctggcagacatctttgcttctaacagggttc
gtgagtccaaccgccccgccccaccccatcccacgtgcgtttgccaagtc
tgctttgggctgctggaggagggcctgggctttgccctgactttgagctt
tgagactggagagaggggaaggacctggggtctttctctcagctcctgag
cccttatcatctttggacagtgtcctacatgtctctctgtgtcttttctt
tctgttggatcccataactaatgaagctgcaggctttatcttcctcgccg
tgtgtgcccagtgcctcccacgcagttgcgcctttgtttgatgactgatg
aaggagactggaatcctgggtcttttgccctggtgacaggttacttactg
cctgtgacttctagaatggaaacttcctcttcttcatctcccttgtgccc
aatttggcaagtgcaccacactcctacctgaagaaggcagagccattggt
ggaccaggagctccagactggcctgcctccttttcacattaaccctcacc
taacaaattgggtctactctttgccagttg
actgaagccttgcattttaaccaaagcagcctcatagcttgcagctatgg
tgaagggtcaactccccctgggaagccatctaccttctttcatgctgcct
tgttttcaggtgcactgtcctgttcctagcacccacggtgagtgacccta
agtaacaggttagccatgatatccagaccctgggaatcacagggttttgg
gttgttttttggggggggcggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_151519413_151520582
seq2: B6Ng01-197D09.b_48_1227 (reverse)

seq1  CAACTGGGCAAAGAGTTTAGACCCATTTTGGTGAGTGAGTGTATATGTGA  50
      ||||| |||||||||  |||||||| |||| |  ||||| ||  ||||||
seq2  CAACT-GGCAAAGAG--TAGACCCAATTTGTTAGGTGAGGGTTAATGTGA  47

seq1  AAA-GAGGCAGCCAGGCCGGGAGCTCTGTGCCCACCATGGCCTCTGCCT-  98
      ||| ||||||| |  | | |||||||   | ||||||  | |||||||| 
seq2  AAAGGAGGCAGGCCAGTCTGGAGCTCCTGGTCCACCAATGGCTCTGCCTT  97

seq1  -CTCAGGTA-GAGTGT-GTGCACTTGCCAAA-TGGGCAC-AGGGAGATGA  143
        ||||||| |||||| |||||||||||||| ||||||| ||||||||||
seq2  CTTCAGGTAGGAGTGTGGTGCACTTGCCAAATTGGGCACAAGGGAGATGA  147

seq1  AGAAGA-GAAG-TTCCA-TCTAG-AGTCACAGGCAGTAAGTAACCTGTCA  189
      |||||| |||| ||||| ||||| ||||||||||||||||||||||||||
seq2  AGAAGAGGAAGTTTCCATTCTAGAAGTCACAGGCAGTAAGTAACCTGTCA  197

seq1  CCAGG--CATAGACCCAGGATTCCAGTCTCC-TCATCAGTCATCAAACAA  236
      |||||   | ||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGGGCAAAAGACCCAGGATTCCAGTCTCCTTCATCAGTCATCAAACAA  247

seq1  AGGCGCAACTGCGTGGGAGGCACTGGGCACACACGGCGAGGAAGATAAAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCAACTGCGTGGGAGGCACTGGGCACACACGGCGAGGAAGATAAAG  297

seq1  CCTGCAGCTTCATTAGTTATGGGATCCAACAGAAAGAAAAGACACAGAGA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCTTCATTAGTTATGGGATCCAACAGAAAGAAAAGACACAGAGA  347

seq1  GACATGTAGGACACTGTCCAAAGATGATAAGGGCTCAGGAGCCTGAGAGA  386
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACATGTAGGACACTGTCCAAAGATGATAAGGGCTCAGGAG-CTGAGAGA  396

seq1  AAGACCCCAGGTCCTTCCCCTCTCTCCAGTCTCAAAGCTCAAAGTCAGGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCAGGTCCTTCCCCTCTCTCCAGTCTCAAAGCTCAAAGTCAGGG  446

seq1  CAAAGCCCAGGCCCTCCTCCAGCAGCCCAAAGCAGACTTGGCAAACGCAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCAGGCCCTCCTCCAGCAGCCCAAAGCAGACTTGGCAAACGCAC  496

seq1  GTGGGATGGGGTGGGGCGGGGCGGTTGGACTCACGAACCCTGTTAGAAGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATGGGGTGGGGCGGGGCGGTTGGACTCACGAACCCTGTTAGAAGC  546

seq1  AAAGATGTCTGCCAGCCCCTCGAGGCTTTTCAGTTGCCCCAGGTGGGGTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCTGCCAGCCCCTCGAGGCTTTTCAGTTGCCCCAGGTGGGGTT  596

seq1  GCAGACATTATATGTACAGTGTGCCACTTGTGTCCTTATCCAGGAGGACT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATTATATGTACAGTGTGCCACTTGTGTCCTTATCCAGGAGGACT  646

seq1  GTCAGCCCACCCGTCTCCCTCACTCCTAGGCATAGCCCCCAGGACTCTCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCCACCCGTCTCCCTCACTCCTAGGCATAGCCCCCAGGACTCTCA  696

seq1  GATTAGGGGGTCTCCTTTCTGTGGGGTACTGAGAGGAGAAAGAGGGAGGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGGGTCTCCTTTCTGTGGGGTACTGAGAGGAGAAAGAGGGAGGT  746

seq1  GTTCAATGGCAACTTCTGCTTCTGGAAAGATTCAGTTCAATGAACTGGGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGGCAACTTCTGCTTCTGGAAAGATTCAGTTCAATGAACTGGGG  796

seq1  TAGACTAGAAAAAGAGTGCAGCGCGTTCCTGCACCGGCAAGCTCTGTGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGAAAAAGAGTGCAGCGCGTTCCTGCACCGGCAAGCTCTGTGCA  846

seq1  GTGCCCCAAGTCATAACCGGTGTTCACTGGGGCACAACCGGTGTTCACAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCAAGTCATAACCGGTGTTCACTGGGGCACAACCGGTGTTCACAG  896

seq1  GCCCTTCCCAAAGCTGCCTGGCCCTCCAGAGTTGCTGTGACCTGTCAGCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCCAAAGCTGCCTGGCCCTCCAGAGTTGCTGTGACCTGTCAGCA  946

seq1  CCATGGCCCATGCTTACCCACAGTCTCCCTGGGCAGGATCGAGTTTCCCA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCCATGCTTACCCACAGTCTCCCTGGGCAGGATCGAGTTTCCCA  996

seq1  CGGGTAGGGATGGCACCCTTCCTCCTTCACTGAGGCACCAGAGAGAGCTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAGGGATGGCACCCTTCCTCCTTCACTGAGGCACCAGAGAGAGCTG  1046

seq1  AGCTCTTCTGAATAATTTACAACCCTTCACAGCAGGCCAGGAAGCCCTGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCTGAATAATTTACAACCCTTCACAGCAGGCCAGGAAGCCCTGA  1096

seq1  AAGAGTAGGGAGCCACAGCTTTGGGGCTAGGCTGTGGCTAGGCTGTGGGG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGGGAGCCACAGCTTTGGGGCTAGGCTGTGGCTAGGCTGTGGGG  1146

seq1  TCCTTTTATTGAACTCTGTGGCCCTGGAGAATTC  1170
      ||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATTGAACTCTGTGGCCCTGGAGAATTC  1180

seq1: chr4_151374659_151374884
seq2: B6Ng01-197D09.g_71_296

seq1  ACTGAAGCCTTGCATTTTAACCAAAGCAGCCTCATAGCTTGCAGCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCCTTGCATTTTAACCAAAGCAGCCTCATAGCTTGCAGCTATGG  50

seq1  TGAAGGGTCAACTCCCCCTGGGAAGCCATCTACCTTCTTTCATGCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTCAACTCCCCCTGGGAAGCCATCTACCTTCTTTCATGCTGCCT  100

seq1  TGTTTTCAGGTGCACTGTCCTGTTCCTAGCACCCACGGTGAGTGACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGGTGCACTGTCCTGTTCCTAGCACCCACGGTGAGTGACCCTA  150

seq1  AGTAACAGGTTAGCCATGATATCCAGACCCTGGGAATCACAGGGTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGGTTAGCCATGATATCCAGACCCTGGGAATCACAGGGTTTTGG  200

seq1  GTTGTTTTTTGGGGGGGGCGGGGGGG  226
      ||||||||||||||||||||||||||
seq2  GTTGTTTTTTGGGGGGGGCGGGGGGG  226