BAC Information

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BAC

Clone NameB6Ng01-197G15
Chromosome4 (Build37)
Map Location 80,485,877 - 80,669,404
singlet/doubletdoublet
Overlap geneTyrp1, D4Bwg0951e
Upstream genenone
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197G15.bB6Ng01-197G15.g
ACCGA019285GA019286
length1,1231,145
definitionB6Ng01-197G15.b B6Ng01-197G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,485,877 - 80,487,002)(80,668,280 - 80,669,404)
sequence
gaattcattccacttctgcttagcattttgactgctagcttcaggcagat
gcctgccttcctagttcagcattgcagtgtagatctctaaacaaaactcc
tttagtgctttgcaaataagtccgtgtgagacaaaacaggcagtctgtca
gcaaaccagaatctatctaagtacttgcagtcatccagaccacattctaa
acaaaaattatcgttacacaaatcatttcaaaattgaagtcataaactgc
taggagttcatggtgtttcaattaaaaataagaaagtgggagaggtagaa
aaatcaaggattaaaaaataaaactcaaggattgtgatacaaccaacaga
aacacaattagctgccaataatggaaactatgttttcctccacatatttt
tggagaagtttcttcatgaagtgagtttcgttgtttctactgcccatttg
actcccccaactaaattccaaactttgttcaataagtctggggtcccaaa
cattattgacacactcactgactccttagcaggtagagagctaaaggaaa
aggacaccagggctaagcaagccaggacacaagatgttagcagaagcaga
gaccactaatggatttctatgatctaggagatgctgcaggagccttcttt
ctcccttccttactggaattttgcaactgggaaaaacgtctgcgatgtct
gcactgatgacttgatgggatccagaagcaacttcgattctactcttata
agccccaactctgtcttttctcaatggagagtggtctgtgaatccttgga
agagtacgataccctgggaacactttgtaacagtaagacccaaatgacag
ctactattcacaattctttattctataaatgactgtgttgcctgtaaggt
ccctcttcagagtgaaatctgctatctctcttcagagaatcaatgcagtt
gcacgttaagcacccaggagactcaaggcagtctaactggtgcttcttgg
gaaacacaaagtacttgtgtattttattgatttttcttcagcatcagtac
gttctaacttcgttttcaaaggcttgtgtagatattcctctaatacattc
agaactgcctagcagtcatgtgt

gaattcagaaagttacttccaatgttcctctgtgtgtatatgtgtccctc
cttctttatctctctctccctccttctctttgtatgtatgcatgcatgta
tgttttcttgcatgatatgtccaggtgaaggtcattatcttcaccctcca
acccaacatcacttccgtgcctataccttagggacaccagctttcatgta
acaatactgaaagttgtagcccttggcactgacagccaagtacaaatccc
agtatcatttctaagtctttgtactacttatgtttaagagtgattcacta
tgaaattcactacaagaaaattaaaccctttgtgcaggggaatatttcca
caacccaaggcatttctcatgtaaataagagaaaaaataaaatgagaaaa
aaaacatatcttaagaaaatatttatctgactaaatatcttatattgtaa
attgcaattcaatgtttttccttcctttgtctaggaaagcatttttttaa
atgaaaacatcataatgtactatggaaaatttcaaaacagaaatcagaag
tattattgcagtttacattttttttttgagaaaatgcaggatctggaaga
agcatttagttaaatttacctggaatatgatgtgttacagtgaacagtac
tacataagtaataaattaattacattgagttttctgataacaaaacatgg
caggaagaagtctatttctagtgacccacttagatatattcttgtaactt
taccacagacaagtggacaagcctcacatctatttctccttgtagaccct
ttgcaaggtgcaatcagaaacccatagttgcatgagaggcagccccgctc
acaaggcattggctcttctgtgagtcaagtcacaacaggttagtgatcct
catctaaatggcctggtttttttttttttttttctaagatgcagcaagaa
atatcccttcttggttttattttgtgaataaaaacctttttaaccactta
acaaaatttcctattaaaaataattttgaaaattatgttgggtcccttta
agcaatcaattaatgcttttgaataccaataaatgagaaattaggaccaa
agtgacactatttgttatttggagagagtttgctataagtatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80485877_80487002
seq2: B6Ng01-197G15.b_46_1168

seq1  GAATTCATTCCACTTCTGCTTAGCATTTTGACTGCTAGCTTCAGGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCACTTCTGCTTAGCATTTTGACTGCTAGCTTCAGGCAGAT  50

seq1  GCCTGCCTTCCTAGTTCAGCATTGCAGTGTAGATCTCTAAACAAAACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTTCCTAGTTCAGCATTGCAGTGTAGATCTCTAAACAAAACTCC  100

seq1  TTTAGTGCTTTGCAAATAAGTCCGTGTGAGACAAAACAGGCAGTCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCTTTGCAAATAAGTCCGTGTGAGACAAAACAGGCAGTCTGTCA  150

seq1  GCAAACCAGAATCTATCTAAGTACTTGCAGTCATCCAGACCACATTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAGAATCTATCTAAGTACTTGCAGTCATCCAGACCACATTCTAA  200

seq1  ACAAAAATTATCGTTACACAAATCATTTCAAAATTGAAGTCATAAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTATCGTTACACAAATCATTTCAAAATTGAAGTCATAAACTGC  250

seq1  TAGGAGTTCATGGTGTTTCAATTAAAAATAAGAAAGTGGGAGAGGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTCATGGTGTTTCAATTAAAAATAAGAAAGTGGGAGAGGTAGAA  300

seq1  AAATCAAGGATTAAAAAATAAAACTCAAGGATTGTGATACAACCAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGGATTAAAAAATAAAACTCAAGGATTGTGATACAACCAACAGA  350

seq1  AACACAATTAGCTGCCAATAATGGAAACTATGTTTTCCTCCACATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATTAGCTGCCAATAATGGAAACTATGTTTTCCTCCACATATTTT  400

seq1  TGGAGAAGTTTCTTCATGAAGTGAGTTTCGTTGTTTCTACTGCCCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGTTTCTTCATGAAGTGAGTTTCGTTGTTTCTACTGCCCATTTG  450

seq1  ACTCCCCCAACTAAATTCCAAACTTTGTTCAATAAGTCTGGGGTCCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCAACTAAATTCCAAACTTTGTTCAATAAGTCTGGGGTCCCAAA  500

seq1  CATTATTGACACACTCACTGACTCCTTAGCAGGTAGAGAGCTAAAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGACACACTCACTGACTCCTTAGCAGGTAGAGAGCTAAAGGAAA  550

seq1  AGGACACCAGGGCTAAGCAAGCCAGGACACAAGATGTTAGCAGAAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCAGGGCTAAGCAAGCCAGGACACAAGATGTTAGCAGAAGCAGA  600

seq1  GACCACTAATGGATTTCTATGATCTAGGAGATGCTGCAGGAGCCTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTAATGGATTTCTATGATCTAGGAGATGCTGCAGGAGCCTTCTTT  650

seq1  CTCCCTTCCTTACTGGAATTTTGCAACTGGGAAAAACGTCTGCGATGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCCTTACTGGAATTTTGCAACTGGGAAAAACGTCTGCGATGTCT  700

seq1  GCACTGATGACTTGATGGGATCCAGAAGCAACTTCGATTCTACTCTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGATGACTTGATGGGATCCAGAAGCAACTTCGATTCTACTCTTATA  750

seq1  AGCCCCAACTCTGTCTTTTCTCAATGGAGAGTGGTCTGTGAATCCTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAACTCTGTCTTTTCTCAATGGAGAGTGGTCTGTGAATCCTTGGA  800

seq1  AGAGTACGATACCCTGGGAACACTTTGTAACAGTAAGACCCAAATGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACGATACCCTGGGAACACTTTGTAACAGTAAGACCCAAATGACAG  850

seq1  CTACTATTCACAATTCTTTATTCTATAAATGACTGTGTTGCCTGTAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATTCACAATTCTTTATTCTATAAATGACTGTGTTGCCTGTAAGGT  900

seq1  CCCTCTTCAGAGTGAAATCTGCTATCTCTCTTCAGAGAATCAATGCAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCAGAGTGAAATCTGCTATCTCTCTTCAGAGAATCAATGCAGTT  950

seq1  GCACGTTAAGCACCCAGGAGACTCAAGGCAGTCTAACTGGTGC-TCTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCACGTTAAGCACCCAGGAGACTCAAGGCAGTCTAACTGGTGCTTCTTGG  1000

seq1  GAAACACAAAGTACTTGTGTATTTTATTGA-TTTTCTTCAGCATCAGTAC  1048
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAACACAAAGTACTTGTGTATTTTATTGATTTTTCTTCAGCATCAGTAC  1050

seq1  GTTTCTAACTTCGTTTTCAAAAAGCCTAGTGTAGATTAATCCTCTTAATA  1098
      | ||||||||||||||||  |||| || ||||||| || ||||| |||||
seq2  G-TTCTAACTTCGTTTTC--AAAGGCTTGTGTAGA-TATTCCTC-TAATA  1095

seq1  CATCCAGAACTGCTTAGCAGTCATGTGT  1126
      ||| ||||||||| ||||||||||||||
seq2  CATTCAGAACTGCCTAGCAGTCATGTGT  1123


seq1: chr4_80668280_80669404
seq2: B6Ng01-197G15.g_68_1212 (reverse)

seq1  CAGATACTTATAGCAAA-ACTCTC--AAT-ACAA--TGTGTCACTTTTGG  44
      |||||||||||||||||  |||||  ||| ||||   ||||||||||  |
seq2  CAGATACTTATAGCAAACTCTCTCCAAATAACAAATAGTGTCACTTT--G  48

seq1  GTCATAA--TCTCATTATTGGGTACTCAAAAGCATTAATTTGATTGCTTA  92
      ||| |||  |||||||  | |||| ||||||||||||| |||||||||||
seq2  GTCCTAATTTCTCATTTATTGGTATTCAAAAGCATTAA-TTGATTGCTTA  97

seq1  AAGGGA-CCAACATAATTTTAAAAATTATTTTTAATA-GAAATTT--GTA  138
      |||||| ||||||||||||| |||||||||||||||| |||||||   ||
seq2  AAGGGACCCAACATAATTTTCAAAATTATTTTTAATAGGAAATTTTGTTA  147

seq1  AGT-GTTAAAAAGGTTTT--ATCAACAAATAAAACC-AGAA-GGATAATT  183
      ||| ||||||||||||||   |||  |||||||||| |||| ||||| ||
seq2  AGTGGTTAAAAAGGTTTTTATTCACAAAATAAAACCAAGAAGGGATATTT  197

seq1  CTTGCTGCATCTTAG--AAAAAAAAAAAAAAACCA-GCCATTTAGATTGA  230
      |||||||||||||||  |||||||||||||||||| |||||||||| |||
seq2  CTTGCTGCATCTTAGAAAAAAAAAAAAAAAAACCAGGCCATTTAGA-TGA  246

seq1  GGATCACTAACCTG-TGTGACTTGACTCACAGAAGAGCCAATGCCTTGTG  279
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGATCACTAACCTGTTGTGACTTGACTCACAGAAGAGCCAATGCCTTGTG  296

seq1  AGCGGGGCTGCCTCTCATGC-ACTATGGGTTTCTGATTGCACCTTGCAAA  328
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCGGGGCTGCCTCTCATGCAACTATGGGTTTCTGATTGCACCTTGCAAA  346

seq1  GGGTCTACAAGGAG-AATAGATGTGAGGCTTGTCCACTTGTCTGTGGT-A  376
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GGGTCTACAAGGAGAAATAGATGTGAGGCTTGTCCACTTGTCTGTGGTAA  396

seq1  AGTTACAAGAATATATCTAAGTGGGTCACTAGAAATAGACTTCTTCCTGC  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAGAATATATCTAAGTGGGTCACTAGAAATAGACTTCTTCCTGC  446

seq1  CATGTTTTGTTATCAGAAAACTCAATGTAATTAATTTATTACTTATGTAG  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTGTTATCAGAAAACTCAATGTAATTAATTTATTACTTATGTAG  496

seq1  TACTGTTCACTGTAACACATCATATTCCAGGTAAATTTAACTAAATGCTT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCACTGTAACACATCATATTCCAGGTAAATTTAACTAAATGCTT  546

seq1  CTTCCAGATCCTGCATTTTCTCAAAAAAAAAATGTAAACTGCAATAATAC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATCCTGCATTTTCTCAAAAAAAAAATGTAAACTGCAATAATAC  596

seq1  TTCTGATTTCTGTTTTGAAATTTTCCATAGTACATTATGATGTTTTCATT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTCTGTTTTGAAATTTTCCATAGTACATTATGATGTTTTCATT  646

seq1  TAAAAAAATGCTTTCCTAGACAAAGGAAGGAAAAACATTGAATTGCAATT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATGCTTTCCTAGACAAAGGAAGGAAAAACATTGAATTGCAATT  696

seq1  TACAATATAAGATATTTAGTCAGATAAATATTTTCTTAAGATATGTTTTT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATAAGATATTTAGTCAGATAAATATTTTCTTAAGATATGTTTTT  746

seq1  TTTCTCATTTTATTTTTTCTCTTATTTACATGAGAAATGCCTTGGGTTGT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTTTATTTTTTCTCTTATTTACATGAGAAATGCCTTGGGTTGT  796

seq1  GGAAATATTCCCCTGCACAAAGGGTTTAATTTTCTTGTAGTGAATTTCAT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTCCCCTGCACAAAGGGTTTAATTTTCTTGTAGTGAATTTCAT  846

seq1  AGTGAATCACTCTTAAACATAAGTAGTACAAAGACTTAGAAATGATACTG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCACTCTTAAACATAAGTAGTACAAAGACTTAGAAATGATACTG  896

seq1  GGATTTGTACTTGGCTGTCAGTGCCAAGGGCTACAACTTTCAGTATTGTT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTACTTGGCTGTCAGTGCCAAGGGCTACAACTTTCAGTATTGTT  946

seq1  ACATGAAAGCTGGTGTCCCTAAGGTATAGGCACGGAAGTGATGTTGGGTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGCTGGTGTCCCTAAGGTATAGGCACGGAAGTGATGTTGGGTT  996

seq1  GGAGGGTGAAGATAATGACCTTCACCTGGACATATCATGCAAGAAAACAT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGAAGATAATGACCTTCACCTGGACATATCATGCAAGAAAACAT  1046

seq1  ACATGCATGCATACATACAAAGAGAAGGAGGGAGAGAGAGATAAAGAAGG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCATACATACAAAGAGAAGGAGGGAGAGAGAGATAAAGAAGG  1096

seq1  AGGGACACATATACACACAGAGGAACATTGGAAGTAACTTTCTGAATTC  1125
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACATATACACACAGAGGAACATTGGAAGTAACTTTCTGAATTC  1145


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