BAC Information

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BAC

Clone NameB6Ng01-197I16
Chromosome4 (Build37)
Map Location 6,202,300 - 6,203,412
singlet/doubletsinglet
Overlap geneCyp7a1
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik
Downstream geneSdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197I16.bB6Ng01-197I16.g
ACCGA019375GA019376
length1,1421,200
definitionB6Ng01-197I16.b B6Ng01-197I16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaagctatggctgcctagaagatgagtgctgggaggttttcta
tttcgacgatagtagatagactacatgaagcacctgtggctttataaaca
cactgaacaatcaagcaaaaacaaacaaacaaagaaacaaacaaaacaaa
ctgttccacaccgttcacatcctttaggatcggttgctgtatacttctgg
aaattaatttaaataattttccccaaaggttaatgacatggacagccagt
attaaagccaggatggaaagcttctgcctgttttgctttacaacacactc
cacatctttggtaggtgagctcttctgtagtgtgtttacttctttttcta
cacacagaagcacagtgttagctgttgtccccagctttgaatgttatgtc
agcacatgagggacagaccttcggcttatcgactattgcagctctctgct
tgttctggagcctcttctgagaagatggacttagttcaaggccagataat
gctatttttttcttttttcttttttcttttttttaggaggacaaatagtt
agtgtttgctctggtcacccaagttcaagttattggatcatggtcctgtg
catatataaagcctagttagagccacagtttctggaccgtctttgctttg
ctaagcacagattctccccttgggacgttttcctgcttttgcaaaatgat
gagcattttctttgatctgggggattgctgtggtagtgagctgttgcata
tggttttatcattggaataaggagaaggtatggaaacattttttaaattt
gtcttaatttatttctagtattcaataccttcatgattacacagcatgaa
aaaaatactagtacattagtacctttttaattttaaatttaaaagacaca
tctttgactaaatcttaacagatatagatagttccccttagcatattcac
attcacccactggtaatgccagatcttggttaaactatacttaaaaaatt
acaagttttttgatgcaaagtttatgtatgccgtgtggtggagcaaatcc
taagctgagaagagtatatatttagaaggggttctttttctgtgacattg
aactggactaagatgctcctggctaagcaagtgtgtcgtcat

gaattcaatgaaaatgaatgcacagcatatctaaactaatgggacataat
gaaagaggaaagttcatagcattaagtgccttcataaagaaattggagag
atctcacagtaacaacttaacagcacaatgtaagctctagaacaaaacaa
aagcaaacccacccgagaagagatgtcagaaaataatcaaactgagggct
ttaataaaatagacacaaagagaacaatacacacacacacaatcaatgaa
acaaagacttggttcttgagaaaatcaacaagatagataaatcattatcc
aaactagctaaaagacagaaaaataatatccaaattaacaaaaccagaaa
caaaaaaggagacatagaaacaaataccaaggaaatcctaagaatcatta
ggttatactttaaaagacctgtactccacaaaattggaaaaatgtaaaag
gaatggacagtttcccagatagataccacttggcaaacacaataaaggca
atatatagcaaaccaatagccaacatcaaattgaatgaagagaaactcaa
agcaattccactaaaatcagggacaagacaaggctgtccactctttccat
atatattccatataatacctgagtttaataagagagtaaaaagacaacta
aataagatcaaggggattcaaattaaagagaaagaagtcaaagtttcata
atttgcaagtgatatgacagtatatgtatgtgacaccaaaattcctacca
gagaactcctacagctgataaacaccttaagcaaagtagcgggatataag
ttttcaattggaaaacaaaatcagtagccctcttatatacaaataacaaa
ggggctgagaaagaaatcaggaaacaacacccttcacaatagtcacaatt
aatattaaatgtcttgagtaactgtaaacaaacaggcaaaagacctgtat
aattttaaaaattcaaatccttcggagaggaaatttaaaagaataccaga
gattggaaagatcctcctccatgctcatggaatggataggatcaagataa
taaaaatgtccattttacccaaaatccattcaaatttcattgcaatcccc
caccgaaatttccaatccatctttatagactgaaaaatatatcactcatt
ggaaaacgatgctagcatcctttatacaagaaattctgtggagaaatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6202300_6203412
seq2: B6Ng01-197I16.b_44_1178 (reverse)

seq1  CACACTTGCTTAGGCA-GAGCATC-TAGT-CAGTTC-ATGTCACAG--AA  44
      ||||||||||||| || ||||||| |||| |||||| |||||||||  ||
seq2  CACACTTGCTTAGCCAGGAGCATCTTAGTCCAGTTCAATGTCACAGAAAA  50

seq1  AGAACCCC-TCTAAATAT-TACTCTTCTCAGCTTAGG-TTTGCTCCA-CA  90
      |||||||| ||||||||| |||||||||||||||||| ||||||||| ||
seq2  AGAACCCCTTCTAAATATATACTCTTCTCAGCTTAGGATTTGCTCCACCA  100

seq1  CAC-GCATACATAAAC-TTGCATC-AAAAACTTGTAATTTTTTAGTTAT-  136
      ||| |||||||||||| ||||||| |||||||||||||||||||  ||| 
seq2  CACGGCATACATAAACTTTGCATCAAAAAACTTGTAATTTTTTAAGTATA  150

seq1  GTTTAA-CAAGATCT-GCATTACCAGT-GGTGAATGTGAATATGCTAAGG  183
      |||||| |||||||| ||||||||||| ||||||||||||||||||||||
seq2  GTTTAACCAAGATCTGGCATTACCAGTGGGTGAATGTGAATATGCTAAGG  200

seq1  GGAACTATCTATATCTTGTTAGATTTAGTCAAAGATGTGTCTTTTAAATT  233
      ||||||||||||||||  | ||||||||||||||||||||||||||||||
seq2  GGAACTATCTATATCTGTTAAGATTTAGTCAAAGATGTGTCTTTTAAATT  250

seq1  TAAAATTAAAA--GTACTAATGTACTAGTATTTTTTTCATGCTGTGTAAT  281
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAAAAGGTACTAATGTACTAGTATTTTTTTCATGCTGTGTAAT  300

seq1  CATGAAGGTATTGAATACTAGAAATAAATTAAGACAAATTTAAAAAATGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGTATTGAATACTAGAAATAAATTAAGACAAATTTAAAAAATGT  350

seq1  TTCCATACCTTCTCCTTATTCCAATGAT-AAACCATATGCAACAGCTCAC  380
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCCATACCTTCTCCTTATTCCAATGATAAAACCATATGCAACAGCTCAC  400

seq1  TACCACAGCAATCCCCCAGATCAAAG-AAATGCTCATCATTTTGCAAAAG  429
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACCACAGCAATCCCCCAGATCAAAGAAAATGCTCATCATTTTGCAAAAG  450

seq1  CAGGAAAACGTCCCAAGGGGAGAATCTGTGCTTAGCAAAGC-AAGACGGT  478
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGGAAAACGTCCCAAGGGGAGAATCTGTGCTTAGCAAAGCAAAGACGGT  500

seq1  CCAGAAACTGTGGCTCTAACTAGGCTTTATATATGCACAGGACCATGATC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACTGTGGCTCTAACTAGGCTTTATATATGCACAGGACCATGATC  550

seq1  CAATAACTTGAACTTGGGTGACCAGAGCAAACACTAACTATTTGTCCTCC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTTGAACTTGGGTGACCAGAGCAAACACTAACTATTTGTCCTCC  600

seq1  TAAAAAAAAGAAAAAAGAAAAAAGAAAAAAATAGCATTATCTGGCCTTGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGAAAAAAGAAAAAAGAAAAAAATAGCATTATCTGGCCTTGA  650

seq1  ACTAAGTCCATCTTCTCAGAAGAGGCTCCAGAACAAGCAGAGAGCTGCAA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCCATCTTCTCAGAAGAGGCTCCAGAACAAGCAGAGAGCTGCAA  700

seq1  TAGTCGATAAGCCGAAGGTCTGTCCCTCATGTGCTGACATAACATTCAAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGATAAGCCGAAGGTCTGTCCCTCATGTGCTGACATAACATTCAAA  750

seq1  GCTGGGGACAACAGCTAACACTGTGCTTCTGTGTGTAGAAAAAGAAGTAA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACAACAGCTAACACTGTGCTTCTGTGTGTAGAAAAAGAAGTAA  800

seq1  ACACACTACAGAAGAGCTCACCTACCAAAGATGTGGAGTGTGTTGTAAAG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTACAGAAGAGCTCACCTACCAAAGATGTGGAGTGTGTTGTAAAG  850

seq1  CAAAACAGGCAGAAGCTTTCCATCCTGGCTTTAATACTGGCTGTCCATGT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGGCAGAAGCTTTCCATCCTGGCTTTAATACTGGCTGTCCATGT  900

seq1  CATTAACCTTTGGGGAAAATTATTTAAATTAATTTCCAGAAGTATACAGC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCTTTGGGGAAAATTATTTAAATTAATTTCCAGAAGTATACAGC  950

seq1  AACCGATCCTAAAGGATGTGAACGGTGTGGAACAGTTTGTTTTGTTTGTT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGATCCTAAAGGATGTGAACGGTGTGGAACAGTTTGTTTTGTTTGTT  1000

seq1  TCTTTGTTTGTTTGTTTTTGCTTGATTGTTCAGTGTGTTTATAAAGCCAC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTGTTTGTTTTTGCTTGATTGTTCAGTGTGTTTATAAAGCCAC  1050

seq1  AGGTGCTTCATGTAGTCTATCTACTATCGTCGAAATAGAAAACCTCCCAG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTCATGTAGTCTATCTACTATCGTCGAAATAGAAAACCTCCCAG  1100

seq1  CACTCATCTTCTAGGCAGCCATAGCTTGAGAATTC  1113
      |||||||||||||||||||||||||||||||||||
seq2  CACTCATCTTCTAGGCAGCCATAGCTTGAGAATTC  1135


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