BAC Information

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BAC

Clone NameB6Ng01-197N11
Chromosome14 (Build37)4 (Build37)
Map Location 40,375,926 - 40,377,06925,831,996 - 25,832,357
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N11.bB6Ng01-197N11.g
ACCGA019600GA019601
length1,125762
definitionB6Ng01-197N11.b B6Ng01-197N11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,375,926 - 40,377,069)(25,831,996 - 25,832,357)
sequence
gaattcaaggaaaatctctggaagactttatagggagccaaagtgaaggt
tgaaggggtgcaattatgttatcatctcaaaaaaataaaagaaagttaag
aaattaatgcaagaagacaacctagaggatcttgtactcactgctgtgat
gcaattattatttcttcctaagctacctcttttactggtcacgtttcatt
aggagcaggatgtctgagttagtatgggaagatggctctatggttaagga
acttgttatataaagtatgaggagctgaaatcaagagcacttgtttcata
agtatgaagaactgaattcagattcttaacatccatctaaaagattgtca
gatgtgagtagtggcttgttcctttaaccccagtagtcaggatataacga
tatgtgtatctgtaataattcaagatcagcctagtctacatagtgtattc
cctgttagccaagtctatgtggtaagatttgcatctcaaaaatctaaatt
aattaattgataatggtgtgactacttgcctgtgatcctctaagtgttgg
cgaatcggtgaggctcactggtcatcaagttagtctaaaatgatgatctt
caggtttaagagatcatgtttcaggagacgaggcaaaaaaatgattgagg
agatcactgggcatcttccactcacctctatattatcatttacaggcata
tacttacatgtacacacacagagacacagacagacagacagacacacaca
cacacacacacacacatacacacacatacacacacacacacacacacaca
cacacacacacacatatatatatacatacatcatacacaagcacttgcac
atgcacaaacacacacacacatatttctaggttagcctgagctataggag
agatcttgtctcaaaaagaatctaaatctttaacacattcctccacaagc
tgcttgctaagttgttcttagaggactagatgaagtgtcccaagagaaac
agacagagattgtggggaaataaaggttagtctgcctttgcattcagaac
agcatgcctctggtgtgctgcagttgtgggctgcagtagactctgtcttg
gcctctgtagcatgactgcccatgc

gaattctcatctcttatttatttgtttttattacatactcatcaatacat
aaaacaacctgcccagtctgtatgttgtcattgttgttcttgttttttgg
aaaggtggttgataagcagcaaggactcatttgaataagaaagggaatat
gggtggagcccagcacacattccctgtccactgcccagttagttactcct
gtagctgactcacaaagtattttgtgtggagctgcagacttgaggatgat
gaatgaagctcaacagtggggcttctatacagcctcactcagactacatg
aaaaagcatacccaaaggctaccctgctttcatactagaatgagagcatc
agtctgtagacattaatttagggatgaaatccttatctgttcctgttcta
gatcacaaaaaattgatacaaagacctactaagtttattaacaaatagag
cttacatttcaaatgttatcccctttaccagtttccccctctgcaaacca
cctattccattcccccttaccctgcttctatgagggtgctccctccagcc
cccagccaactcctgcctcactgccctagcattcctctacagtgggacat
caagccttcacaggaccaagcgtcccctcccattgatgccagataaagcc
cccttagctccttcagtccttcccctaacccctctattagggtccctgtg
ctcattccaatgatctgcatttgtattggtcaagatctgatagggcctct
caggagacagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_40375926_40377069
seq2: B6Ng01-197N11.b_50_1174

seq1  GAATTCAAGGAAAATCTCTGGAAGACTTTATAGGGAGCCAAAGTGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAAATCTCTGGAAGACTTTATAGGGAGCCAAAGTGAAGGT  50

seq1  TGAAGGGGTGCAATTATGTTATCATCTCAAAAAAATAAAAGAAAGTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGTGCAATTATGTTATCATCTCAAAAAAATAAAAGAAAGTTAAG  100

seq1  AAATTAATGCAAGAAGACAACCTAGAGGATCTTGTACTCACTGCTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGCAAGAAGACAACCTAGAGGATCTTGTACTCACTGCTGTGAT  150

seq1  GCAATTATTATTTCTTCCTAAGCTACCTCTTTTACTGGTCACGTTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTATTTCTTCCTAAGCTACCTCTTTTACTGGTCACGTTTCATT  200

seq1  AGGAGCAGGATGTCTGAGTTAGTATGGGAAGATGGCTCTATGGTTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGGATGTCTGAGTTAGTATGGGAAGATGGCTCTATGGTTAAGGA  250

seq1  ACTTGTTATATAAAGTATGAGGAGCTGAAATCAAGAGCACTTGTTTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTATATAAAGTATGAGGAGCTGAAATCAAGAGCACTTGTTTCATA  300

seq1  AGTATGAAGAACTGAATTCAGATTCTTAACATCCATCTAAAAGATTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAGAACTGAATTCAGATTCTTAACATCCATCTAAAAGATTGTCA  350

seq1  GATGTGAGTAGTGGCTTGTTCCTTTAACCCCAGTAGTCAGGATATAACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGTAGTGGCTTGTTCCTTTAACCCCAGTAGTCAGGATATAACGA  400

seq1  TATGTGTATCTGTAATAATTCAAGATCAGCCTAGTCTACATAGTGTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATCTGTAATAATTCAAGATCAGCCTAGTCTACATAGTGTATTC  450

seq1  CCTGTTAGCCAAGTCTATGTGGTAAGATTTGCATCTCAAAAATCTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGCCAAGTCTATGTGGTAAGATTTGCATCTCAAAAATCTAAATT  500

seq1  AATTAATTGATAATGGTGTGACTACTTGCCTGTGATCCTCTAAGTGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTGATAATGGTGTGACTACTTGCCTGTGATCCTCTAAGTGTTGG  550

seq1  CGAATCGGTGAGGCTCACTGGTCATCAAGTTAGTCTAAAATGATGATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCGGTGAGGCTCACTGGTCATCAAGTTAGTCTAAAATGATGATCTT  600

seq1  CAGGTTTAAGAGATCATGTTTCAGGAGACGAGGCAAAAAAATGATTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTAAGAGATCATGTTTCAGGAGACGAGGCAAAAAAATGATTGAGG  650

seq1  AGATCACTGGGCATCTTCCACTCACCTCTATATTATCATTTACAGGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGGGCATCTTCCACTCACCTCTATATTATCATTTACAGGCATA  700

seq1  TACTTACATGTACACACACAGAGACACAGACAGACAGACAGACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATGTACACACACAGAGACACAGACAGACAGACAGACACACACA  750

seq1  CACACACACACACACATACACACACATACACACACACACACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACATACACACACATACACACACACACACACACACACA  800

seq1  CACACACACACACATATATATATACATACATCATACACAAGCACTTGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACATATATATATACATACATCATACACAAGCACTTGCAC  850

seq1  ATGCACAAACACACACACACATATTTCTAGGTTAGCCTGAGCTATAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAACACACACACACATATTTCTAGGTTAGCCTGAGCTATAGGAG  900

seq1  AGATCTTGTCTCAAAAAGAAATCTAAATCTTTAACACAATTCCCCCACAA  950
      |||||||||||||||||| |||||||||||||||||| ||||| ||||||
seq2  AGATCTTGTCTCAAAAAG-AATCTAAATCTTTAACAC-ATTCCTCCACAA  948

seq1  GCTGCTTGCTAAGTTGTTCTTAAGAGGACTAGATGAAGTGTCCCAAGAGA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTGCTTGCTAAGTTGTTCTT-AGAGGACTAGATGAAGTGTCCCAAGAGA  997

seq1  AACAGGAACAGGAGATTGTGGGGAAATAAAGGTTAGGTCTGCTTTTGCAT  1050
      |||||  ||| |||||||||||||||||||||||| |||||| |||||||
seq2  AACAG--ACA-GAGATTGTGGGGAAATAAAGGTTA-GTCTGCCTTTGCAT  1043

seq1  TCCAGACAGCATGGCTCTGGTGGTTGCTGCAAGTTGGTGGGCTTGCAAGT  1100
      ||   |||||||| ||||||||  |||||| |||| |||||| ||| |||
seq2  TCAGAACAGCATGCCTCTGGTG--TGCTGC-AGTT-GTGGGC-TGC-AGT  1087

seq1  TAAGACTCTGTCCTTGCACTCTGTAAGCATGACTGGCCCCATGC  1144
        ||||||||| ||||  |||||| ||||||||||  |||||||
seq2  --AGACTCTGT-CTTGGCCTCTGT-AGCATGACTG--CCCATGC  1125


seq1: chr4_25831996_25832357
seq2: B6Ng01-197N11.g_517_827 (reverse)

seq1  AGCTGTCTCCTGAGAGAC---ATCAGCTGAAGAAAGGATCCAAGGAACTG  47
      |||||||||||||||| |   ||||| |   ||      ||||   |   
seq2  AGCTGTCTCCTGAGAGGCCCTATCAGATCTTGA------CCAATACA---  41

seq1  AAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTAC  97
      ||      |||||   ||| |||           |||| |  ||  | ||
seq2  AA------TGCAG-ATCATTGGA-----------ATGAGC--ACAGGGAC  71

seq1  CCCATAGCTCCCAGGAACTAAACGATCAATCAAAGAGTACACATGGTGTG  147
      ||                           | | ||||       |||  |
seq2  CC---------------------------TAATAGAG------GGGTTAG  88

seq1  GCTCATGGCTTCAGCTGCATATGTAGCAGAGGATGGCCTTGTCAGTCATC  197
      |   | | ||          | | |||  |||  ||| || || | ||||
seq2  GGGAAGGACT---------GAAGGAGCTAAGG-GGGCTTTATCTGGCATC  128

seq1  AATGGGAGGAGAAGCCTTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAC  247
      ||||||||| || ||  |||||||||||||||||  ||| |||| |||| 
seq2  AATGGGAGGGGACGC--TTGGTCCTGTGAAGGCTTGATGTCCCACTGTAG  176

seq1  AGAAATGCCAGGGCCAGGAAGG--GGAG-----TGGGTGGTTGGGGG---  287
      || ||||| |||| |||  |||  ||||     |||| | | | |||   
seq2  AGGAATGCTAGGG-CAGTGAGGCAGGAGTTGGCTGGGGGCTGGAGGGAGC  225

seq1  -----------AGCAGGGGAAGGGGGAGAGG-ATAGGGGATCTTTTGGAG  325
                 ||||||| ||||||||  || ||||| | | |   |  |
seq2  ACCCTCATAGAAGCAGGGTAAGGGGGAATGGAATAGGTGGTTTGCAGAGG  275

seq1  GTGAAATTAGGAAAGGGGAATAACATTTGAAATGTAA  362
      | |||| | | ||||||| ||||||||||||||||||
seq2  GGGAAACTGGTAAAGGGG-ATAACATTTGAAATGTAA  311


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