BAC Information

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BAC

Clone NameB6Ng01-197O15
Chromosome4 (Build37)
Map Location 135,189,777 - 135,397,753
singlet/doubletdoublet
Overlap geneIl28ra, Il22ra1, LOC665334, Myom3
Upstream geneMan1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
Downstream geneFusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197O15.bB6Ng01-197O15.g
ACCGA019652GA019653
length1,133270
definitionB6Ng01-197O15.b B6Ng01-197O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,396,610 - 135,397,753)(135,189,777 - 135,190,046)
sequence
gaattccagagcagttgactctggatgctttgaattaaattctgctactt
ctgtctcccagacccattttcagccaaagtttctcctgattgcaggtagt
atcacaaaataaaataaaaataagttctgttgctcccagccttgatctct
aacatgaaagaaaaacggtttaggcttcttcttctttttttttttttttt
ttcctatgcacttgcaagttgaggcgctgtaatttacccaacacaaattc
cagtgccagatggcgatcttctccaaacacttccttcttcctcactccca
ttttcaaggaagtgatggaggaaatgagcaggaacaaacctggaggggca
gcaagaataagtgagcagggctggagaaatggctcagcggttaagagcac
tggctcttccttcttatagaggtcctgtgttcaattctgagccacatggt
ggctcacaaccatttgtaacaagatgtggtgtgtccaaggagaagcacaa
tgtgctcatgtacataaaataaatcctaaaaaatgaaagaaagaaaaaaa
gaaagaaagaaagaaagaaagaaagaaaggtaggttatggttttaaaaaa
aagaataaatggacagttaggtaacaatccttcaacaaaagcttatgaaa
acagacagacagacagactgacagacacccaaactaagcaccccagagta
aacctagggctgtcaagcagagagaggcctgggccccaggtagaatttgc
ctctatgggagatatgctgtgcaggtacctgccagccaccagggcaactt
ctgtggaagtgccaaagataattgactgacacagaactctggctgggcct
agtggctcagcccggataactttggggagctgaggcaggaggtttgcgag
tttcaaaggcctgcctacagagggagttggggttacctgaattacttaac
aaaaacttaggtcctcataatatggaaccctttccaccccaccccaccct
tacccaaaaaacccaaaacccaaagctcactcttcatttaggaataagaa
cccccacaccccacaagtgtgagactggtcttggggagatccatagaatt
gacgtactatgactagccatcaacaggagaagg
ttgttggcccattctacaaaggttcgtccacagactggcaagtatcagag
ctctctcccttgtgaaggctgactgatattaagttgtatgtgtttctcca
tacgggagagccatacggtcatctgttcagttttctgtcttctattcttt
ggatcatatatgcagaaggaggaggaggagttgtgtatgtgtgcatgtga
gtgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtatgc
cagaaatcaacctcatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135396610_135397753
seq2: B6Ng01-197O15.b_46_1178 (reverse)

seq1  CCTTCTCCTGGTGGAATGTGCTAGTCATAGTAACGTCAA-TCTATGGATC  49
      |||||||||| ||  ||| |||||||||||| ||||||| ||||||||||
seq2  CCTTCTCCTGTTG--ATG-GCTAGTCATAGT-ACGTCAATTCTATGGATC  46

seq1  TCCCCAGAACACAGTCACTCACACTTGGTGGGTGTGGGTGTTCCTTTATT  99
      ||||||  || ||||  ||||||||||  ||||||||| ||||  ||| |
seq2  TCCCCAAGAC-CAGT--CTCACACTTGTGGGGTGTGGGGGTTC--TTA-T  90

seq1  TCCTTAATGAAGAGTTGAGCTTTGGGTTTTTGGGTTTTTTTGGGGTAGGG  149
      |||| ||||||||| |||||||||||||||  || |||||||||  ||||
seq2  TCCTAAATGAAGAG-TGAGCTTTGGGTTTT--GGGTTTTTTGGGTAAGGG  137

seq1  TGGGGTGGGGTGGGAAGGGTTCCATATTTATGAGGA-CTAAGTTTTTTGT  198
      ||||||||||||| |||||||||||| ||||||||| ||||| |||||||
seq2  TGGGGTGGGGTGGAAAGGGTTCCATA-TTATGAGGACCTAAG-TTTTTGT  185

seq1  TAAGTAATTCAGGTAACCCCAACTCCCTCTGTAGGCAGGCCTTTGAAACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTCAGGTAACCCCAACTCCCTCTGTAGGCAGGCCTTTGAAACT  235

seq1  CGCAAACCTCCTGCCTCAGCTCCCCAA--GTATCCGGGCTGAGCCACTAG  296
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  CGCAAACCTCCTGCCTCAGCTCCCCAAAGTTATCCGGGCTGAGCCACTAG  285

seq1  GCCCAGCCAGAGTTCTGTGTCAGTCAATTATCTTTGGCACTTCCACAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCAGAGTTCTGTGTCAGTCAATTATCTTTGGCACTTCCACAGAA  335

seq1  GTTGCCCTGGTGGCTGGCAGGTACCTGCACAGCATATCTCCCATAGAGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTGGTGGCTGGCAGGTACCTGCACAGCATATCTCCCATAGAGGC  385

seq1  AAATTCTACCTGGGGCCCAGGCCTCTCTCTGCTTGACAGCCCTAGGTTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTACCTGGGGCCCAGGCCTCTCTCTGCTTGACAGCCCTAGGTTTA  435

seq1  CTCTGGGGTGCTTAGTTTGGGTGTCTGTCAGTCTGTCTGTCTGTCTGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGTGCTTAGTTTGGGTGTCTGTCAGTCTGTCTGTCTGTCTGTTT  485

seq1  TCATAAGCTTTTGTTGAAGGATTGTTACCTAACTGTCCATTTATTCTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGCTTTTGTTGAAGGATTGTTACCTAACTGTCCATTTATTCTTTT  535

seq1  TTTTAAAACCATAACCTACCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACCATAACCTACCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  585

seq1  TTTTTCTTTCTTTCATTTTTTAGGATTTATTTTATGTACATGAGCACATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTTTCATTTTTTAGGATTTATTTTATGTACATGAGCACATT  635

seq1  GTGCTTCTCCTTGGACACACCACATCTTGTTACAAATGGTTGTGAGCCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCCTTGGACACACCACATCTTGTTACAAATGGTTGTGAGCCAC  685

seq1  CATGTGGCTCAGAATTGAACACAGGACCTCTATAAGAAGGAAGAGCCAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGCTCAGAATTGAACACAGGACCTCTATAAGAAGGAAGAGCCAGT  735

seq1  GCTCTTAACCGCTGAGCCATTTCTCCAGCCCTGCTCACTTATTCTTGCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACCGCTGAGCCATTTCTCCAGCCCTGCTCACTTATTCTTGCTG  785

seq1  CCCCTCCAGGTTTGTTCCTGCTCATTTCCTCCATCACTTCCTTGAAAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCAGGTTTGTTCCTGCTCATTTCCTCCATCACTTCCTTGAAAATG  835

seq1  GGAGTGAGGAAGAAGGAAGTGTTTGGAGAAGATCGCCATCTGGCACTGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGGAAGAAGGAAGTGTTTGGAGAAGATCGCCATCTGGCACTGGA  885

seq1  ATTTGTGTTGGGTAAATTACAGCGCCTCAACTTGCAAGTGCATAGGAAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTGGGTAAATTACAGCGCCTCAACTTGCAAGTGCATAGGAAAA  935

seq1  AAAAAAAAAAAAAAGAAGAAGAAGCCTAAACCGTTTTTCTTTCATGTTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGAAGAAGAAGCCTAAACCGTTTTTCTTTCATGTTAG  985

seq1  AGATCAAGGCTGGGAGCAACAGAACTTATTTTTATTTTATTTTGTGATAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGGCTGGGAGCAACAGAACTTATTTTTATTTTATTTTGTGATAC  1035

seq1  TACCTGCAATCAGGAGAAACTTTGGCTGAAAATGGGTCTGGGAGACAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCAATCAGGAGAAACTTTGGCTGAAAATGGGTCTGGGAGACAGAA  1085

seq1  GTAGCAGAATTTAATTCAAAGCATCCAGAGTCAACTGCTCTGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAATTTAATTCAAAGCATCCAGAGTCAACTGCTCTGGAATTC  1133

seq1: chr4_135189777_135190046
seq2: B6Ng01-197O15.g_73_342

seq1  TTGTTGGCCCATTCTACAAAGGTTCGTCCACAGACTGGCAAGTATCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGCCCATTCTACAAAGGTTCGTCCACAGACTGGCAAGTATCAGAG  50

seq1  CTCTCTCCCTTGTGAAGGCTGACTGATATTAAGTTGTATGTGTTTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCTTGTGAAGGCTGACTGATATTAAGTTGTATGTGTTTCTCCA  100

seq1  TACGGGAGAGCCATACGGTCATCTGTTCAGTTTTCTGTCTTCTATTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGAGAGCCATACGGTCATCTGTTCAGTTTTCTGTCTTCTATTCTTT  150

seq1  GGATCATATATGCAGAAGGAGGAGGAGGAGTTGTGTATGTGTGCATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATATATGCAGAAGGAGGAGGAGGAGTTGTGTATGTGTGCATGTGA  200

seq1  GTGAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCACGTGGAGGC  250
      |||||||||||||||||||||||||||||||||||| |||  ||| | ||
seq2  GTGAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTATGC  250

seq1  CAGAAATCCACCTCAGCTGT  270
      |||||||| |||||| ||||
seq2  CAGAAATCAACCTCATCTGT  270