BAC Information

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BAC

Clone NameB6Ng01-199F24
Chromosome4 (Build37)
Map Location 67,270,394 - 67,271,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F24.bB6Ng01-199F24.g
ACCGA020724GA020725
length1,145775
definitionB6Ng01-199F24.b B6Ng01-199F24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttacctatatatctttaattttatgtcaaccccttttaatatca
cttatattttctcccagttcagagatgaaaaaattaaatgaaccaaaagt
taacagatttgttgataagatgagtgattattgcagctggactttacatc
aggttcttttggctgcaaggctcattttgatttttattctgaaagatatt
ccaagttccttgggttaaagagtacatgatggtaggaattatcttttgtt
tatcccttgctgcacacagtatctctttttcaataagattaaacacatac
aatttggtgtggtctagatataattttaacaaatttaggcagtggagaat
cagcaccatttcaataagctggaccctgttatttctggaaatgttgatgc
tatccaatttacagagtaatcagcaccactttccaaagtgctttgaggtt
cccaccctcatcaattgttcttcctctatacattgtatactacagctgta
acttcaggacctcagccccccccccaactggtgatttaatggccccttac
tctttggagcaccatctaaggctcctctttaatcagcttcccagggaaag
actcaggtggggacaaagaggtaggtcacttcaactgtgtttccatggtg
acccatacatgaatgtgatcttagcccaggactttagacctaatgacctc
taatcacatcctcaatactgttggggactcaatgatagagcaatttcctg
tgacttgctctaatgaaagagctttcagaaaggtagacttcctgccttaa
gcagcagggtcaaccagcaattactttagagcaaaactagacagaatctt
tgtagaaatgctgtgaccaaagttgataatacattactaggatcagaggt
gccataagaccactcctgttggagtatttcagctcctaattaacctgatg
cgattcaatctgacctacttcatttatgatctacataagatatgtgaaaa
ggaattgtctcaaagaaatcatgaagacatgtctgctgggataagagaaa
gagagttgttataggttaagatcaatatgtcatacgtggactgataaaat
aacgggagttgtatctacagtatctacatggcagtaagtcttggc

gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
ttgaatgctttttctgcatctaacgagaagatcatgtggtttctgtcttt
gagtttgtttatataatggattacgttgatggatttctgtatattaatcc
atccccgcatccctggaataaagcctacttggtcaggatggatgattgtt
ttaatgtattcttggattcggttagcgagaattttattgagtatttttgc
atctatattcataagggaatttggtcttaagttctctatctttgtaggat
atttctgtggtttaggtatcagagtaattgtggcttcatagaatgaattg
ggtagagtaccttctacttctattttgtggactagtttgtgcagaactgg
aattagatcttctctgaaggtcttatagaactctgcactaaacccatctg
ctcctgggcttttgttggctgggagactattaatgactgcttctatatct
ttaagggatatgggactgtttagatcgttaacttgatcttgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
ttctttcaggatctgttgttatgtctcccttatcatttctgattttgtta
attaggatgctgtccctggttcctctagtaatctagctaaggggttaatc
tatcttgttgattttctcaaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67270394_67271565
seq2: B6Ng01-199F24.b_48_1192

seq1  GAATTCTTACCTATATATCTTTAATTTTATGTCAACCCCTTTTAATATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTATATATCTTTAATTTTATGTCAACCCCTTTTAATATCA  50

seq1  CTTATATTTTCTCCCAGTTCAGAGATGAAAAAATTAAATGAACCAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTCTCCCAGTTCAGAGATGAAAAAATTAAATGAACCAAAAGT  100

seq1  TAACAGATTTGTTGATAAGATGAGTGATTATTGCAGCTGGACTTTACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATTTGTTGATAAGATGAGTGATTATTGCAGCTGGACTTTACATC  150

seq1  AGGTTCTTTTGGCTGCAAGGCTCATTTTGATTTTTATTCTGAAAGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTTTGGCTGCAAGGCTCATTTTGATTTTTATTCTGAAAGATATT  200

seq1  CCAAGTTCCTTGGGTTAAAGAGTACATGATGGTAGGAATTATCTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCCTTGGGTTAAAGAGTACATGATGGTAGGAATTATCTTTTGTT  250

seq1  TATCCCTTGCTGCACACAGTATCTCTTTTTCAATAAGATTAAACACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTGCTGCACACAGTATCTCTTTTTCAATAAGATTAAACACATAC  300

seq1  AATTTGGTGTGGTCTAGATATAATTTTAACAAATTTAGGCAGTGGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTGTGGTCTAGATATAATTTTAACAAATTTAGGCAGTGGAGAAT  350

seq1  CAGCACCATTTCAATAAGCTGGACCCTGTTATTTCTGGAAATGTTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATTTCAATAAGCTGGACCCTGTTATTTCTGGAAATGTTGATGC  400

seq1  TATCCAATTTACAGAGTAATCAGCACCACTTTCCAAAGTGCTTTGAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAATTTACAGAGTAATCAGCACCACTTTCCAAAGTGCTTTGAGGTT  450

seq1  CCCACCCTCATCAATTGTTCTTCCTCTATACATTGTATACTACAGCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTCATCAATTGTTCTTCCTCTATACATTGTATACTACAGCTGTA  500

seq1  ACTTCAGGACCTCAGCCCCCCCCCCAACTGGTGATTTAATGGCCCCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGACCTCAGCCCCCCCCCCAACTGGTGATTTAATGGCCCCTTAC  550

seq1  TCTTTGGAGCACCATCTAAGGCTCCTCTTTAATCAGCTTCCCAGGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAGCACCATCTAAGGCTCCTCTTTAATCAGCTTCCCAGGGAAAG  600

seq1  ACTCAGGTGGGGACAAAGAGGTAGGTCACTTCAACTGTGTTTCCATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTGGGGACAAAGAGGTAGGTCACTTCAACTGTGTTTCCATGGTG  650

seq1  ACCCATACATGAATGTGATCTTAGCCCAGGACTTTAGACCTAATGACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATACATGAATGTGATCTTAGCCCAGGACTTTAGACCTAATGACCTC  700

seq1  TAATCACATCCTCAATACTGTTGGGGACTCAATGATAGAGCAATTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACATCCTCAATACTGTTGGGGACTCAATGATAGAGCAATTTCCTG  750

seq1  TGACTTGCTCTAATGAAAGAGCTTTCAGAAAGGTAGACTTCCTGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCTCTAATGAAAGAGCTTTCAGAAAGGTAGACTTCCTGCCTTAA  800

seq1  GCAGGCAGGGTCAACCAGCAATTACTTTAGAGCAAAACTAGACAGAATCT  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-GCAGGGTCAACCAGCAATTACTTTAGAGCAAAACTAGACAGAATCT  849

seq1  TTGTAGAAATGCTGTGACCAAAGTTGATAATACATTACTAGGATCAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAAATGCTGTGACCAAAGTTGATAATACATTACTAGGATCAGAGG  899

seq1  TGCCATAAAGACCACTCCTGTTGGAGTATTTCAGCTCCTAATTAACCTGA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAT-AAGACCACTCCTGTTGGAGTATTTCAGCTCCTAATTAACCTGA  948

seq1  TGCGATTCAATTCTGACCTACTTCATTTATGAATTCTACATAAAGATAAT  1000
      |||||||||| |||||||||||||||||||||  ||||||| ||||| ||
seq2  TGCGATTCAA-TCTGACCTACTTCATTTATGA--TCTACAT-AAGAT-AT  993

seq1  GTGGAAAAGGAAATTGTCTCAAAAAGAAATCATTGAAGGAACAATGTCTG  1050
      || ||||||| |||||||||  |||||||||| |||||  || |||||||
seq2  GT-GAAAAGG-AATTGTCTC--AAAGAAATCA-TGAAG--AC-ATGTCTG  1035

seq1  CTGGGATAAGAAGAAAGAGGAAGTGTTATAAGGTTAAAGATTAAATATGT  1100
      |||||||||| ||||||| ||  |||||| ||||| |||| | |||||||
seq2  CTGGGATAAG-AGAAAGA-GAGTTGTTAT-AGGTT-AAGA-TCAATATGT  1080

seq1  CATACGTTGACATGATAAAAAATAAATTGGAGTTGTATCTACGAGTATAC  1150
      ||||||| ||| ||||||||    ||  |||||||||||||| ||||| |
seq2  CATACGTGGAC-TGATAAAA---TAACGGGAGTTGTATCTAC-AGTAT-C  1124

seq1  TCACTGGGCAGTAAGTCTTGGC  1172
      | ||  ||||||||||||||||
seq2  T-ACATGGCAGTAAGTCTTGGC  1145


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