BAC Information

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BAC

Clone NameB6Ng01-199M08
Chromosome4 (Build37)
Map Location 32,842,912 - 32,971,903
singlet/doubletdoublet
Overlap geneMdn1, Lyrm2, Ankrd6
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2
Downstream geneLOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199M08.bB6Ng01-199M08.g
ACCGA021015GA021016
length1,008372
definitionB6Ng01-199M08.b B6Ng01-199M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,971,236 - 32,971,903)(32,842,912 - 32,843,289)
sequence
gaattccccagatgatgggaaggtctttttctctcgttccaagtcacatt
attagtactggagcttaatgtgactactggggaagagtttaatttgcaaa
gacaattaggcaatttcatggctgacttgaagcatttgtctctccggcca
ctgagttggttctggttgtcaccctaacatcctccctgccatcgggagga
gagcggagtgtgagaagtacaggcttttggcttgtcacaacaaaccggaa
caaaccaaacaaaccagaacaaacaaaacaaaccggaacaaacaaaacaa
accagaacgaaaacctatttgcagaaagaggtcttttcttagtttgaaga
agggacatagaaaaatgtttcggctgggggtgagtgttactcaatagaag
tttttttgtgaaagctaatcttggttgtctacttgacaaaccagtgaaga
ggtgaggatttgcctccatcagattgggcatctctgtagggcgttttctt
aattgctaacagatgtaggagggcccagccaactgtgtggctggacaggt
ggtcccgggaggcattagagagtgggcttaaccaggctcagcagtataga
cctgatacaggtgcaggcagatctttatgagttctaggccagtttggtct
gcagggcaaattgcaggtcaggcaaggctctacatagtgagaccatgtct
caaaaaagaaaaagaaagggttgcccagagagatggctccatggtcaaga
gcactgtctgctcttcctgaagacctaagtccagttcccagcactgatgt
gacagctcttagctgtctggaattctggtccccagacatccatctgacac
cctttctgtcttcctcagtcaccaggtctgcatgtggttcccagacatat
atgtggacaattcgtctatgcacataaaataaagggagcctgctgaacat
gaccctggaagcaagccagtaagcagtgtttctttccacagcccgtgttt
tcatttcc
ctttttttttttttctttcttttttttttcgagacagggtttctctgtat
agccctggctatcctggaactcattttgtaggccaggctggcctcaaact
cagaaatccccctgcctctgcctcccaagtgctggaattaaaggtgtgcg
ccaccactgcccagcgaattccatattctttacacatatctctgaaatgc
taatttgaagttttggttggttggttgttttatgatggtggtagtgtttt
tacaattctcatgaaaaaagccaaataaaattctatattttctgatcaga
aaatcaaaaaaataaaataaatttactccagaaatgtgaagctaaccttc
ataatttactgcatgtggtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_32971236_32971903
seq2: B6Ng01-199M08.b_41_708 (reverse)

seq1  ACCTGCAATTTGCCCTGCAGACCAAACTGGCCTAGAACTCATAAAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAATTTGCCCTGCAGACCAAACTGGCCTAGAACTCATAAAGATCT  50

seq1  GCCTGCACCTGTATCAGGTCTATACTGCTGAGCCTGGTTAAGCCCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACCTGTATCAGGTCTATACTGCTGAGCCTGGTTAAGCCCACTCT  100

seq1  CTAATGCCTCCCGGGACCACCTGTCCAGCCACACAGTTGGCTGGGCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCTCCCGGGACCACCTGTCCAGCCACACAGTTGGCTGGGCCCTC  150

seq1  CTACATCTGTTAGCAATTAAGAAAACGCCCTACAGAGATGCCCAATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGTTAGCAATTAAGAAAACGCCCTACAGAGATGCCCAATCTGA  200

seq1  TGGAGGCAAATCCTCACCTCTTCACTGGTTTGTCAAGTAGACAACCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAAATCCTCACCTCTTCACTGGTTTGTCAAGTAGACAACCAAGA  250

seq1  TTAGCTTTCACAAAAAAACTTCTATTGAGTAACACTCACCCCCAGCCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTCACAAAAAAACTTCTATTGAGTAACACTCACCCCCAGCCGAA  300

seq1  ACATTTTTCTATGTCCCTTCTTCAAACTAAGAAAAGACCTCTTTCTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCTATGTCCCTTCTTCAAACTAAGAAAAGACCTCTTTCTGCAA  350

seq1  ATAGGTTTTCGTTCTGGTTTGTTTTGTTTGTTCCGGTTTGTTTTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTTCGTTCTGGTTTGTTTTGTTTGTTCCGGTTTGTTTTGTTTGT  400

seq1  TCTGGTTTGTTTGGTTTGTTCCGGTTTGTTGTGACAAGCCAAAAGCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTGTTTGGTTTGTTCCGGTTTGTTGTGACAAGCCAAAAGCCTGT  450

seq1  ACTTCTCACACTCCGCTCTCCTCCCGATGGCAGGGAGGATGTTAGGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCACACTCCGCTCTCCTCCCGATGGCAGGGAGGATGTTAGGGTGA  500

seq1  CAACCAGAACCAACTCAGTGGCCGGAGAGACAAATGCTTCAAGTCAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAACCAACTCAGTGGCCGGAGAGACAAATGCTTCAAGTCAGCCA  550

seq1  TGAAATTGCCTAATTGTCTTTGCAAATTAAACTCTTCCCCAGTAGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGCCTAATTGTCTTTGCAAATTAAACTCTTCCCCAGTAGTCACA  600

seq1  TTAAGCTCCAGTACTAATAATGTGACTTGGAACGAGAGAAAAAGACCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCCAGTACTAATAATGTGACTTGGAACGAGAGAAAAAGACCTTC  650

seq1  CCATCATCTGGGGAATTC  668
      ||||||||||||||||||
seq2  CCATCATCTGGGGAATTC  668

seq1: chr4_32842912_32843289
seq2: B6Ng01-199M08.g_61_438

seq1  GAATTCCTTTTTTTTTTTTTCTTTCTTTTTTTTTTCGAGACAGGGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTTTTTTTTTCTTTCTTTTTTTTTTCGAGACAGGGTTTCT  50

seq1  CTGTATAGCCCTGGCTATCCTGGAACTCATTTTGTAGGCCAGGCTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTATCCTGGAACTCATTTTGTAGGCCAGGCTGGCCT  100

seq1  CAAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGG  150

seq1  TGTGCGCCACCACTGCCCAGCGAATTCCATATTCTTTACACATATCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCCACCACTGCCCAGCGAATTCCATATTCTTTACACATATCTCTG  200

seq1  AAATGCTAATTTGAAGTTTTGGTTGGTTGGTTGTTTTATGATGGTGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAATTTGAAGTTTTGGTTGGTTGGTTGTTTTATGATGGTGGTAG  250

seq1  TGTTTTTACAATTCTCATGAAAAAAGCCAAATAAAATTCTATATTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTACAATTCTCATGAAAAAAGCCAAATAAAATTCTATATTTTCTG  300

seq1  ATCAGAAAATCAAAAAAATAAAATAAATTTACTCCAGAAATGTGAAGCAA  350
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCAGAAAATCAAAAAAATAAAATAAATTTACTCCAGAAATGTGAAGCTA  350

seq1  ACCTTCATAAATTACTGCATGTGGTCAT  378
      |||||||||| |||||||||||||||||
seq2  ACCTTCATAATTTACTGCATGTGGTCAT  378