BAC Information

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BAC

Clone NameB6Ng01-199N01
Chromosome4 (Build37)
Map Location 142,298,970 - 142,457,223
singlet/doubletdoublet
Overlap geneLOC546484, 6330411D24Rik
Upstream geneAgmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199N01.bB6Ng01-199N01.g
ACCGA021049GA021050
length899710
definitionB6Ng01-199N01.b B6Ng01-199N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,456,326 - 142,457,223)(142,298,970 - 142,299,672)
sequence
gaattcccagcacccatatgactgctcacaaccatctataacacctgctt
ctgacccccttcccactaagcacacatgtggtgcacagatttatatgcag
caaataccaatacatatacatttattgtaattaaaaaaaaagagttagtc
ttgctattgcagaagactagagttcagttctcagaatccatatcaggcag
cccataatcacctgtaaatccaaatccaagggggtctcataaactctgta
gcccccccccccacacacagtattcgttcctgcacacagtttaaacaact
aaaaaaatcaaaaaaaaaaaaaaaaaaagagagagagagagagagaggat
gcccagtatttcatgctgctttagtcttttggttaaaacatgctattcta
taaaaccaggtattagcattatatacctgctgggttccatctttgggaga
tctgtgaacctgtggatacggcatctgaggttccctccatcaatgcaatc
atcctatgtgaagggaaatgtgtcatttaaagttgttatttcagtcctta
gaaactcccagagccaccatcttgcagctctgggcttgctgagtcctctt
cagtgacatcggtttttttttttttttttttttgcgggtgaggtgtctct
gtatgaatgcggtgtttgaaggtttgcttgtcattcctgtgattcagaca
gaggctgacacagttaatgcatcaagctttcaatttactcccagtagttc
caactctttcagggtggggagatggctggcgtgttaagcagaaaaaatag
caatggtagtcacaaagcaggaagggggtggtgcacctcaaacccaaagt
aggaaatgcctgcatccagctgcctgccacctgtgattcagtgagggtg
gaattcacaaacgattggctaggttcagtgagaaacatagaaaggaggta
aaaatgatgagggtgcatcactagagaccctacagacattgagctctgtg
accatggcaactcttataaagaaaaacgttgaactggggctggcttacag
tttcagaggttttgtctattatcatcaaggtgagaagcatgccaacatgc
aggcagatatgatgctggagaaagagctgagagttctacatcttgattcc
caggcagcaggagacttccacactagtcttagcttgatcatatgagacct
caaaaccaacctccacagtaacacacctccttcaacaaggccacacctcc
taatagtgccattccctaagggccaagcattcaaacacttgagtctatgg
gggagggggagtattcctattcaaaccaccacaggaataaaacaaaatga
atattattttttcccttttcttttctctcctttccttgttcattctctct
gtgccccctcctctctctgtctgtctctctctttctctttgttttgtgtc
caatcatctactcacccatgcgtacataccacatccacactcacagttga
atataggccagaatggccttgaaattactacacagttcaaggatgacttt
gagtctttgatcctcctatttcccctcattgagttacttacttggtgatg
ggtggatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142456326_142457223
seq2: B6Ng01-199N01.b_47_945 (reverse)

seq1  CACCCTCACTGACTCACAGGTGGCCAGGCAGCTGGATGCAAGCATTTCCT  50
      |||||||||||| |||||||||| |||||||||||||||| |||||||||
seq2  CACCCTCACTGAATCACAGGTGG-CAGGCAGCTGGATGCAGGCATTTCCT  49

seq1  ACTTT-GGTCTGATGCTGCACCACCCCCTTCCTGCTTTGTGACTAACCAT  99
      ||||| ||| ||| | |||||||||||||||||||||||||||| |||||
seq2  ACTTTGGGTTTGA-GGTGCACCACCCCCTTCCTGCTTTGTGACT-ACCAT  97

seq1  TGCTA-TTTTTCTGC-TCACACGCCAGCCATCTCCCCACCCTG-AAGAGT  146
      ||||| ||||||||| | ||||||||||||||||||||||||| ||||||
seq2  TGCTATTTTTTCTGCTTAACACGCCAGCCATCTCCCCACCCTGAAAGAGT  147

seq1  TGGAACTACTGGGAGT-AATTGAAAGCTTGATGCATTAACTGTGTCAGCC  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAACTACTGGGAGTAAATTGAAAGCTTGATGCATTAACTGTGTCAGCC  197

seq1  TCTGTCTGAATCACAGGAATGACAAGCAAACCTTCAAACACCGCATTCAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGAATCACAGGAATGACAAGCAAACCTTCAAACACCGCATTCAT  247

seq1  ACAGAGACACCTCACCCGCAAAAAAAAAAAAAAAAAAAAACCGATGTCAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACCTCACCCGCAAAAAAAAAAAAAAAAAAAAACCGATGTCAC  297

seq1  TGAAGAGGACTCAGCAAGCCCAGAGCTGCAAGATGGTGGCTCTGGGAGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGACTCAGCAAGCCCAGAGCTGCAAGATGGTGGCTCTGGGAGTT  347

seq1  TCTAAGGACTGAAATAACAACTTTAAATGACACATTTCCCTTCACATAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGACTGAAATAACAACTTTAAATGACACATTTCCCTTCACATAGG  397

seq1  ATGATTGCATTGATGGAGGGAACCTCAGATGCCGTATCCACAGGTTCACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCATTGATGGAGGGAACCTCAGATGCCGTATCCACAGGTTCACA  447

seq1  GATCTCCCAAAGATGGAACCCAGCAGGTATATAATGCTAATACCTGGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCCAAAGATGGAACCCAGCAGGTATATAATGCTAATACCTGGTTT  497

seq1  TATAGAATAGCATGTTTTAACCAAAAGACTAAAGCAGCATGAAATACTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATAGCATGTTTTAACCAAAAGACTAAAGCAGCATGAAATACTGG  547

seq1  GCATCCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTGATTTT  595
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCATCCTCTCTCTCTCTCTCTCTC-TTTTTTTTTTTTTTTTTTTGATTTT  596

seq1  TTTAGTTGTTTAAACTGTGTGCAGGAACGAATACTGTGTGTGGGGGGGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGTTTAAACTGTGTGCAGGAACGAATACTGTGTGTGGGGGGGGG  646

seq1  GGCTACAGAGTTTATGAGACCCCCTTGGATTTGGATTTACAGGTGATTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGTTTATGAGACCCCCTTGGATTTGGATTTACAGGTGATTAT  696

seq1  GGGCTGCCTGATATGGATTCTGAGAACTGAACTCTAGTCTTCTGCAATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCTGATATGGATTCTGAGAACTGAACTCTAGTCTTCTGCAATAG  746

seq1  CAAGACTAACTCTTTTTTTTTAATTACAATAAATGTATATGTATTGGTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTAACTCTTTTTTTTTAATTACAATAAATGTATATGTATTGGTAT  796

seq1  TTGCTGCATATAAATCTGTGCACCACATGTGTGCTTAGTGGGAAGGGGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCATATAAATCTGTGCACCACATGTGTGCTTAGTGGGAAGGGGGT  846

seq1  CAGAAGCAGGTGTTATAGATGGTTGTGAGCAGTCATATGGGTGCTGGGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGGTGTTATAGATGGTTGTGAGCAGTCATATGGGTGCTGGGAA  896

seq1  TTC  898
      |||
seq2  TTC  899

seq1: chr4_142298970_142299672
seq2: B6Ng01-199N01.g_63_772

seq1  GAATTCACAAACGATTGGCTAGGTTCAGTGAGAAACATAGAAAGGAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACGATTGGCTAGGTTCAGTGAGAAACATAGAAAGGAGGTA  50

seq1  AAAATGATGAGGGTGCATCACTAGAGACCCTACAGACATTGAGCTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATGAGGGTGCATCACTAGAGACCCTACAGACATTGAGCTCTGTG  100

seq1  ACCATGGCAACTCTTATAAAGAAAAACGTTGAACTGGGGCTGGCTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCAACTCTTATAAAGAAAAACGTTGAACTGGGGCTGGCTTACAG  150

seq1  TTTCAGAGGTTTTGTCTATTATCATCAAGGTGAGAAGCATGCCAACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGGTTTTGTCTATTATCATCAAGGTGAGAAGCATGCCAACATGC  200

seq1  AGGCAGATATGATGCTGGAGAAAGAGCTGAGAGTTCTACATCTTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATATGATGCTGGAGAAAGAGCTGAGAGTTCTACATCTTGATTCC  250

seq1  CAGGCAGCAGGAGACTTCCACACTAGTCTTAGCTTGATCATATGAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCAGGAGACTTCCACACTAGTCTTAGCTTGATCATATGAGACCT  300

seq1  CAAAACCAACCTCCACAGTAACACACCTCCTTCAACAAGGCCACACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAACCTCCACAGTAACACACCTCCTTCAACAAGGCCACACCTCC  350

seq1  TAATAGTGCCATTCCCTAAGGGCCAAGCATTCAAACACTTGAGTCTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTGCCATTCCCTAAGGGCCAAGCATTCAAACACTTGAGTCTATGG  400

seq1  GGGAGGGGGAGTATTCCTATTCAAACCACCACAGGAATAAAACAAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGAGTATTCCTATTCAAACCACCACAGGAATAAAACAAAATGA  450

seq1  ATATTATTTTTTCCCTTTTCTTTTCTCTCCTTTCCTTGTTCATTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTTTTCCCTTTTCTTTTCTCTCCTTTCCTTGTTCATTCTCTCT  500

seq1  GTGCCCCCTCCTCTCTCTGTCTGTCTCTCTCTTTCTCTTTG-TTTGTGTC  549
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGCCCCCTCCTCTCTCTGTCTGTCTCTCTCTTTCTCTTTGTTTTGTGTC  550

seq1  CAATCATCTACTCACCCATGCGTACATACCACATCCACACTCACAGTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCTACTCACCCATGCGTACATACCACATCCACACTCACAGTTGA  600

seq1  ATATAGGCCAGAATGGCCTTGAAATTACTACACAG-TCAAGGATGACTTT  648
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATAGGCCAGAATGGCCTTGAAATTACTACACAGTTCAAGGATGACTTT  650

seq1  GAGTCTTTGATCCTCCTATTTCCCCTCA-TGAG-TAC-TACT--GGGATG  693
      |||||||||||||||||||||||||||| |||| ||| ||||  | ||||
seq2  GAGTCTTTGATCCTCCTATTTCCCCTCATTGAGTTACTTACTTGGTGATG  700

seq1  GGTGGATGGG  703
      ||||||||||
seq2  GGTGGATGGG  710