BAC Information

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BAC

Clone NameB6Ng01-199N04
Chromosome4 (Build37)
Map Location 57,734,779 - 57,914,403
singlet/doubletdoublet
Overlap geneAkap2
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513
Downstream geneD630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199N04.bB6Ng01-199N04.g
ACCGA021053GA021054
length1,091369
definitionB6Ng01-199N04.b B6Ng01-199N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,734,779 - 57,735,855)(57,914,029 - 57,914,403)
sequence
gaattctcccaggaagcaccatgccctagaaatctgttttgggatttttt
ttcttcttgcttttgacgtagcagaaagtataaactttttttaaaaatca
ataataatgagggccctatcccaacattcctggtttaattggtgtgtggg
gcagcctgaattattgactatatattatattatgtattgtgatattaatt
tattaagcttattaaggtaagtctgcctggtatgcctggtatctggtact
ggaaacagcacctagaaatgtgtgggctaggcagaaatattccaggttca
gtcctttctgctctcccagtaaagggaaggtgtgggcttaggctttggga
atgaagtccaaagcagagcattagccggtcgggcgccctcgggtgattga
tttcagctcagcaagcctgtttctcatctgtaatatggaaacagtacctg
cattgcctgacttctgtgaagagtattttatgtaaagtgtggtggcgcat
tcatgggacaaccttccagacgggaggagggactgcagcctgagcttgga
ctatcttcagtagtctgctgggggtggacccaaggactctgaagggactg
aggaagtggctggaggccaggctatggatgatcagatcattcctctggga
atgagtgacaacctgcaagttcaagggcagacctgggacatactgagtag
acctacagagggtcttggttcggtttggttttcctttgcaaccatccatt
cccatattttttatcttctcttgaaaaattaaatctaaccaggtgagacc
cacatgtccagggggcaggcattttgttgaatgctgggctggactacagg
agatgtctctcaaaacaacaaaaacaatgcaacaacaaccacagcaataa
caataacaatattgattataaggaggaatttgagtagattactttgtata
ttgttcattgcagtattctttcaaaatagtcaaaagattgacataaaaaa
aaaaaacaatacaacccctcctccttattcatccacagattagcataaca
aagcatgtctatgtccacacggtgtaataatgttccagact
ctgtctattctgaagggtcggaacccctagggaagactctaggctagggc
ctgcctttcctttagcaccactgccaccatgtggccactcgcaggcaaac
acgagcctcgttaacccaaaccaacaaaaccccaccctttctgttatcat
ttaaggcaatctttctctatcttcctaatgcttccaccctttaatacatg
cagtccctcatgttgtggtgacctctgaccagaaaattattttcactgtg
tctgtggattgcagaagcttagtaacaaggacagctcaggtgaggatcct
tgaatctcactgagaagagaaatagtggatggggctggggggaactgcct
gggagaggaggtgggggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57734779_57735855
seq2: B6Ng01-199N04.b_44_1134

seq1  GAATTCTCCCAGGAAGCACCATGCCCTAGAAATCTGTTTTGGGATTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAGGAAGCACCATGCCCTAGAAATCTGTTTTGGGATTTTTT  50

seq1  TTCTTCTTGCTTTTGACGTAGCAGAAAGTATAAACTTTTTTTAAAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGCTTTTGACGTAGCAGAAAGTATAAACTTTTTTTAAAAATCA  100

seq1  ATAATAATGAGGGCCCTATCCCAACATTCCTGGTTTAATTGGTGTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGAGGGCCCTATCCCAACATTCCTGGTTTAATTGGTGTGTGGG  150

seq1  GCAGCCTGAATTATTGACTATATATTATATTATGTATTGTGATATTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGAATTATTGACTATATATTATATTATGTATTGTGATATTAATT  200

seq1  TATTAAGCTTATTAAGGTAAGTCTGCCTGGTATGCCTGGTATCTGGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCTTATTAAGGTAAGTCTGCCTGGTATGCCTGGTATCTGGTACT  250

seq1  GGAAACAGCACCTAGAAATGTGTGGGCTAGGCAGAAATATTCCAGGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGCACCTAGAAATGTGTGGGCTAGGCAGAAATATTCCAGGTTCA  300

seq1  GTCCTTTCTGCTCTCCCAGTAAAGGGAAGGTGTGGGCTTAGGCTTTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCTGCTCTCCCAGTAAAGGGAAGGTGTGGGCTTAGGCTTTGGGA  350

seq1  ATGAAGTCCAAAGCAGAGCATTAGCCGGTCGGGCGCCCTCGGGTGATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCCAAAGCAGAGCATTAGCCGGTCGGGCGCCCTCGGGTGATTGA  400

seq1  TTTCAGCTCAGCAAGCCTGTTTCTCATCTGTAATATGGAAACAGTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCAGCAAGCCTGTTTCTCATCTGTAATATGGAAACAGTACCTG  450

seq1  CATTGCCTGACTTCTGTGAAGAGTATTTTATGTAAAGTGTGGTGGCGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTGACTTCTGTGAAGAGTATTTTATGTAAAGTGTGGTGGCGCAT  500

seq1  TCATGGGACAACCTTCCAGACGGGAGGAGGGACTGCAGCCTGAGCTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGACAACCTTCCAGACGGGAGGAGGGACTGCAGCCTGAGCTTGGA  550

seq1  CTATCTTCAGTAGTCTGCTGGGGGTGGACCCAAGGACTCTGAAGGGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCAGTAGTCTGCTGGGGGTGGACCCAAGGACTCTGAAGGGACTG  600

seq1  AGGAAGTGGCTGGAGGCCAGGCTATGGATGATCAGATCATTCCTCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGGCTGGAGGCCAGGCTATGGATGATCAGATCATTCCTCTGGGA  650

seq1  ATGAGTGACAACCTGCAAGTTCAAGGGCAGACCTGGGACATACTGAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGACAACCTGCAAGTTCAAGGGCAGACCTGGGACATACTGAGTAG  700

seq1  ACCTACAGAGGGTCTTGGTTCGGTTTGGTTTTCCTTTGCAACCATCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGAGGGTCTTGGTTCGGTTTGGTTTTCCTTTGCAACCATCCATT  750

seq1  CCCATA-TTTTTATCTTCTCTTGAAAAATTAAATCTAACCAGGTGAGACC  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTTTTTATCTTCTCTTGAAAAATTAAATCTAACCAGGTGAGACC  800

seq1  CACATGTCCAGGGGGCAGGCA-TTTGTTGAATGCT-GGCTGGACTACAGG  847
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  CACATGTCCAGGGGGCAGGCATTTTGTTGAATGCTGGGCTGGACTACAGG  850

seq1  AGATGTCTCTCAAAACAACAAAAACAATGCAACAACAACCACAGCAATAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTCTCAAAACAACAAAAACAATGCAACAACAACCACAGCAATAA  900

seq1  CAATAACAATA-TGATTATAAGGAGGAATTTGAGTAGATTAC-TTGTATA  945
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CAATAACAATATTGATTATAAGGAGGAATTTGAGTAGATTACTTTGTATA  950

seq1  TTGTTCATTGCAGTATTC-TTCCAAATAGTCAAAAGA-TGACA-AAAAAA  992
      |||||||||||||||||| ||| |||||||||||||| ||||| ||||||
seq2  TTGTTCATTGCAGTATTCTTTCAAAATAGTCAAAAGATTGACATAAAAAA  1000

seq1  AAAAAACAAAACAA-CCCTC--TCTTATTCATCAACAGA-TAGCATAACA  1038
      ||||||||| |||| |||||   |||||||||| ||||| ||||||||||
seq2  AAAAAACAATACAACCCCTCCTCCTTATTCATCCACAGATTAGCATAACA  1050

seq1  AAGCATG-CTATGTCCACACGGTGGAATATTG-TCCAGACT  1077
      ||||||| |||||||||||||||| |||| || ||||||||
seq2  AAGCATGTCTATGTCCACACGGTGTAATAATGTTCCAGACT  1091

seq1: chr4_57914029_57914403
seq2: B6Ng01-199N04.g_64_438 (reverse)

seq1  TACCCCCACCTCCTCTCCCAGGCAGTTCCCCCCAGCCCCATCCACTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACCTCCTCTCCCAGGCAGTTCCCCCCAGCCCCATCCACTATTT  50

seq1  CTCTTCTCAGTGAGATTCAAGGATCCTCACCTGAGCTGTCCTTGTTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCAGTGAGATTCAAGGATCCTCACCTGAGCTGTCCTTGTTACTA  100

seq1  AGCTTCTGCAATCCACAGACACAGTGAAAATAATTTTCTGGTCAGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGCAATCCACAGACACAGTGAAAATAATTTTCTGGTCAGAGGTC  150

seq1  ACCACAACATGAGGGACTGCATGTATTAAAGGGTGGAAGCATTAGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAACATGAGGGACTGCATGTATTAAAGGGTGGAAGCATTAGGAAGA  200

seq1  TAGAGAAAGATTGCCTTAAATGATAACAGAAAGGGTGGGGTTTTGTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGATTGCCTTAAATGATAACAGAAAGGGTGGGGTTTTGTTGGT  250

seq1  TTGGGTTAACGAGGCTCGTGTTTGCCTGCGAGTGGCCACATGGTGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTAACGAGGCTCGTGTTTGCCTGCGAGTGGCCACATGGTGGCAGT  300

seq1  GGTGCTAAAGGAAAGGCAGGCCCTAGCCTAGAGTCTTCCCTAGGGGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAAAGGAAAGGCAGGCCCTAGCCTAGAGTCTTCCCTAGGGGTTCC  350

seq1  GACCCTTCAGAATAGACAGGAATTC  375
      |||||||||||||||||||||||||
seq2  GACCCTTCAGAATAGACAGGAATTC  375