BAC Information

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BAC

Clone NameB6Ng01-199P09
Chromosome4 (Build37)
Map Location 146,918,132 - 147,052,305
singlet/doubletdoublet
Overlap geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
Upstream geneLOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199P09.bB6Ng01-199P09.g
ACCGA021153GA021154
length3891,125
definitionB6Ng01-199P09.b B6Ng01-199P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,918,132 - 146,918,520)(147,051,178 - 147,052,305)
sequence
tgaagatgtctcacacctgattgcttgtaagaaaaaacctaacattctat
ttctgggacaagaattggagggtggaatttctggatggaaaaagtgatgt
agggaagagaaaggaggtggaaaagatttaatgggagacagagaagagca
cagataaatgggaaaaggggcagagataaagagcaagctacacatgaggt
cataggcttgaatagtctgaaatttaaatgattattggtagactgctcca
atgaaaggcctatgctttaaattatatagaaacctccttctcacaattta
taacactggtgtgtccaccagtactcccactacactcacgtacatatgca
atgtgtatatatatatatatatgtatatgtgtgtgtgta
gaattccttttactttctttgagtgttcctactatgtgcttatgtaaatg
ctctgagatatccagagactcctgaatgagggaaattctagttaaaatca
taactttttcattgtgtttcctttacatttctctgctttctttggaaaag
taaccactgctatattctctgagatcactccttatctcttatctagcttc
agtgaacttaaaaaagttcaagaaaaaatttaaatatccagaacaagaaa
ttatatttctgtacatataatagttgcaattataaaaatcttactattgc
attaaaatgtatccttatttatgaatgtaaaaatatacaaggtttcaagt
ggatatagagctgttggtttgagcaattttttttctttatttaacttttt
gacatttgatctctgtgtttagatctgggacaacataatctttaccctag
cattttggatgttgaaacaaatctatttagtgatttccctgacactatgg
gctatatcataaatttatacctgagcaaaattatatcagattcagtgtca
ctctgaatcaaattgtaatcataaaattagagatatattgtttagagttc
tactttcgggaaattcactacagatggatcatttatttgtccagcttatg
caaagtacaattttcttttttattggtcattttatttatttacatgtcaa
atgttatgccccttctccattccctgtctgtaagctctatatcccacccc
tccccctgttttttttgatgatgctcccaccaccaatccatctactccca
cctcatgcccctaggattctcctatgcggggatactgaacctttcacagt
accaaagggactcccctcctgttgatgccacataaaggcaatcctctggt
aatatataaagctagagccatttgtacttcccatgtgtactctttatttt
tgtgatttgacccttgaaagctttgtgggtcttgaatattgttgttcctc
ctacacagttgcaagcctttcagcttctcaagcttcccttaactccttca
ttgtagtcccttgctcagttcaatatgcctgcaagaatctgcatcctttt
ggacagtctctggatagcctcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146918132_146918520
seq2: B6Ng01-199P09.b_42_430

seq1  TGAAGATGTCTCACACCTGATTGCTTGTAAGAAAAAACCTAACATTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTCTCACACCTGATTGCTTGTAAGAAAAAACCTAACATTCTAT  50

seq1  TTCTGGGACAAGAATTGGAGGGTGGAATTTCTGGATGGAAAAAGTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGACAAGAATTGGAGGGTGGAATTTCTGGATGGAAAAAGTGATGT  100

seq1  AGGGAAGAGAAAGGAGGTGGAAAAGATTTAATGGGAGACAGAGAAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGAAAGGAGGTGGAAAAGATTTAATGGGAGACAGAGAAGAGCA  150

seq1  CAGATAAATGGGAAAAGGGGCAGAGATAAAGAGCAAGCTACACATGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATGGGAAAAGGGGCAGAGATAAAGAGCAAGCTACACATGAGGT  200

seq1  CATAGGCTTGAATAGTCTGAAATTTAAATGATTATTGGTAGACTGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTTGAATAGTCTGAAATTTAAATGATTATTGGTAGACTGCTCCA  250

seq1  ATGAAAGGCCTATGCTTTAAATTATATAGAAACCTCCTTCTCACAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGCCTATGCTTTAAATTATATAGAAACCTCCTTCTCACAATTTA  300

seq1  TAACACTGGTGTGTCCACCAGTACTCCCACTACACTCACGTACATATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGGTGTGTCCACCAGTACTCCCACTACACTCACGTACATATGCA  350

seq1  ATGTGTATATATATATATATATGTATATGTGTGTGTGTA  389
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATATATATATATATATGTATATGTGTGTGTGTA  389

seq1: chr4_147051178_147052305
seq2: B6Ng01-199P09.g_65_1189 (reverse)

seq1  TGAAGGGAAGGCTATCCAGAGACTGGCCCAAAGAGATGCAGATCCTTGCA  50
      |||||   ||||||||||||||||| || |||| ||||||||| ||||||
seq2  TGAAG---AGGCTATCCAGAGACTGTCCAAAAG-GATGCAGATTCTTGCA  46

seq1  GCCAACCATTGAACTGAGCAAGGGGACCACAATGAAGGAGTTAAGGGAAG  100
      | ||   |||||||||||||| ||||| ||||||||||||||||||||||
seq2  GGCA--TATTGAACTGAGCAA-GGGACTACAATGAAGGAGTTAAGGGAAG  93

seq1  GCCTGAAGAAGCTGAAGGGCTTTGCAACTGTGTAGGAGGAACAACAATA-  149
        ||  |||||||||| ||| |||||||||||||||||||||||||||| 
seq2  --CTTGAGAAGCTGAAAGGC-TTGCAACTGTGTAGGAGGAACAACAATAT  140

seq1  TCAAGACCCACAAAGCTCTCAAGGGTCAAATCAC-AAAATAAAGAGTACA  198
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TCAAGACCCACAAAGCTTTCAAGGGTCAAATCACAAAAATAAAGAGTACA  190

seq1  CAT-GGAAGTACAAATGGCTCTAGCTTTATATA-TACCAGAGGATTGCC-  245
      ||| ||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CATGGGAAGTACAAATGGCTCTAGCTTTATATATTACCAGAGGATTGCCT  240

seq1  TTATGTGGCATCAACAGGAGGGGAGTCCC-TTGGTACTGTG-AAGGTTCA  293
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TTATGTGGCATCAACAGGAGGGGAGTCCCTTTGGTACTGTGAAAGGTTCA  290

seq1  GTATCCCCGCATAGGAGAATCCTAGGGGCATGAGGTGGGAGTAGATGGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCCGCATAGGAGAATCCTAGGGGCATGAGGTGGGAGTAGATGGAT  340

seq1  TGGTGGTGGGAGCATCATCAAAAAAAACAGGGGGAGGGGTGGGATATAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGGAGCATCATCAAAAAAAACAGGGGGAGGGGTGGGATATAGA  390

seq1  GCTTACAGACAGGGAATGGAGAAGGGGCATAACATTTGACATGTAAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGACAGGGAATGGAGAAGGGGCATAACATTTGACATGTAAATAA  440

seq1  ATAAAATGACCAATAAAAAAGAAAATTGTACTTTGCATAAGCTGGACAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGACCAATAAAAAAGAAAATTGTACTTTGCATAAGCTGGACAAA  490

seq1  TAAATGATCCATCTGTAGTGAATTTCCCGAAAGTAGAACTCTAAACAATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATCCATCTGTAGTGAATTTCCCGAAAGTAGAACTCTAAACAATA  540

seq1  TATCTCTAATTTTATGATTACAATTTGATTCAGAGTGACACTGAATCTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAATTTTATGATTACAATTTGATTCAGAGTGACACTGAATCTGA  590

seq1  TATAATTTTGCTCAGGTATAAATTTATGATATAGCCCATAGTGTCAGGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTGCTCAGGTATAAATTTATGATATAGCCCATAGTGTCAGGGA  640

seq1  AATCACTAAATAGATTTGTTTCAACATCCAAAATGCTAGGGTAAAGATTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTAAATAGATTTGTTTCAACATCCAAAATGCTAGGGTAAAGATTA  690

seq1  TGTTGTCCCAGATCTAAACACAGAGATCAAATGTCAAAAAGTTAAATAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCCCAGATCTAAACACAGAGATCAAATGTCAAAAAGTTAAATAAA  740

seq1  GAAAAAAAATTGCTCAAACCAACAGCTCTATATCCACTTGAAACCTTGTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATTGCTCAAACCAACAGCTCTATATCCACTTGAAACCTTGTA  790

seq1  TATTTTTACATTCATAAATAAGGATACATTTTAATGCAATAGTAAGATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACATTCATAAATAAGGATACATTTTAATGCAATAGTAAGATTT  840

seq1  TTATAATTGCAACTATTATATGTACAGAAATATAATTTCTTGTTCTGGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGCAACTATTATATGTACAGAAATATAATTTCTTGTTCTGGAT  890

seq1  ATTTAAATTTTTTCTTGAACTTTTTTAAGTTCACTGAAGCTAGATAAGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTTTTTCTTGAACTTTTTTAAGTTCACTGAAGCTAGATAAGAG  940

seq1  ATAAGGAGTGATCTCAGAGAATATAGCAGTGGTTACTTTTCCAAAGAAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGTGATCTCAGAGAATATAGCAGTGGTTACTTTTCCAAAGAAAG  990

seq1  CAGAGAAATGTAAAGGAAACACAATGAAAAAGTTATGATTTTAACTAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATGTAAAGGAAACACAATGAAAAAGTTATGATTTTAACTAGAA  1040

seq1  TTTCCCTCATTCAGGAGTCTCTGGATATCTCAGAGCATTTACATAAGCAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCATTCAGGAGTCTCTGGATATCTCAGAGCATTTACATAAGCAC  1090

seq1  ATAGTAGGAACACTCAAAGAAAGTAAAAGGAATTC  1128
      |||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGAACACTCAAAGAAAGTAAAAGGAATTC  1125