BAC Information

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BAC

Clone NameB6Ng01-200C07
Chromosome4 (Build37)
Map Location 138,018,761 - 138,222,773
singlet/doubletdoublet
Overlap geneLOC100040618, 4931403E03Rik
Upstream geneHspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1
Downstream geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200C07.bB6Ng01-200C07.g
ACCGA021286GA021287
length854225
definitionB6Ng01-200C07.b B6Ng01-200C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,018,761 - 138,019,605)(138,222,549 - 138,222,773)
sequence
gaattccctccttttcttgtgtgcacactgcgtcttcgggggaggggggc
aatctctgtgcaaagcgcatattttaggggcaagagcacttccacgtctt
gagatcttctgcacaggccgtcaaggaagccattgtccagtagttccatg
tccagcaaagagagacaggcacaagttcagagaagccatgaattccaggc
acaccacagggctggagaagacccaggatttgcaaaatcccccacagtgt
agtcagatgaccgatagatggagccgtgcaaaaaagagaaagagagagag
ggaaaaaaaagatttttaacaaattaatagaagcgacttcctgcggagga
actgtcatcctggttagaaactgtgcagcctctaatctttttcttggaaa
ctcaggcagctgctctggtttacacaatctgcctatgggagggaaaggga
acagggaatcaaccgtgctgtccttattcaacagcagagaagtctcctaa
accatatgcaaaaataaatctcaggcagtgcctgtaacccaggaaacctg
gcagctggactgaagcctgctgggcggcctggggacaaagatcttaggtc
caaagacccatgccccactgcagagggaccaagagtcacagacagacaga
cagacagacagacagacagacagacagacagacagacggacagacatccc
cagccttcccctcaagtgtttcccgatacacagatttgcctgaccttggc
accccttcatgcttggagggtctgtcccctaactcggggcctggggggga
catctcccagagttctggaacagggttcttgaacctagaggcaatccgtt
ttga
tcacctatggtcagcactcacagaacgctgtacccctcccccttacttct
gagtcccgcaaggccaggttctgtggctgccaaggctgacatccatcttc
ctgcctgctcggatgatgtcctttcttgtcctctaaacagctggccaagg
atgagtcacttccccaggagaggcatatcttacagaggggaaggagaggc
gcatgggggtagggtgggggtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138018761_138019605
seq2: B6Ng01-200C07.b_48_901

seq1  GAATTCCCTCCTTTTCTTGTGTGCACACTGCGTCTTCGGGGGAGGGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCTTTTCTTGTGTGCACACTGCGTCTTCGGGGGAGGGGGGC  50

seq1  AATCTCTGTGCAAAGCGCATATTTTAGGGGCAAGAGCACTTCCACGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTGCAAAGCGCATATTTTAGGGGCAAGAGCACTTCCACGTCTT  100

seq1  GAGATCTTCTGCACAGGCCGTCAAGGAAGCCATTGTCCAGTAGTTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTCTGCACAGGCCGTCAAGGAAGCCATTGTCCAGTAGTTCCATG  150

seq1  TCCAGCAAAGAGAGACAGGCACAAGTTCAGAGAAGCCATGAATTCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAAAGAGAGACAGGCACAAGTTCAGAGAAGCCATGAATTCCAGGC  200

seq1  ACACCACAGGGCTGGAGAAGACCCAGGATTTGCAAAATCCCCCACAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGGGCTGGAGAAGACCCAGGATTTGCAAAATCCCCCACAGTGT  250

seq1  AGTCAGATGACCGATAGATGGAGCCGTGCAAAAAAGAGAAAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGACCGATAGATGGAGCCGTGCAAAAAAGAGAAAGAGAGAGAG  300

seq1  GGAAAAAAAAGATTTTTAACAAATTAATAGAAGCGACTTCCTGCGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAGATTTTTAACAAATTAATAGAAGCGACTTCCTGCGGAGGA  350

seq1  ACTGTCATCCTGGTTAGAAACTGTGCAGCCTCTAATCTTTTTCTTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCCTGGTTAGAAACTGTGCAGCCTCTAATCTTTTTCTTGGAAA  400

seq1  CTCAGGCAGCTGCTCTGGTTTACACAATCTGCCTATGGGAGGGAAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAGCTGCTCTGGTTTACACAATCTGCCTATGGGAGGGAAAGGGA  450

seq1  ACAGGGAATCAACCGTGCTGTCCTTATTCAACAGCAGAGAAGTCTCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATCAACCGTGCTGTCCTTATTCAACAGCAGAGAAGTCTCCTAA  500

seq1  ACCATATGCAAAAATAAATCTCAGGCAGTGCCTGTAACCCAGGAAACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATGCAAAAATAAATCTCAGGCAGTGCCTGTAACCCAGGAAACCTG  550

seq1  GCAGCTGGACTGAAGCCTGCTGGGCGGCCTGGGGACAAAGATCTTAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGACTGAAGCCTGCTGGGCGGCCTGGGGACAAAGATCTTAGGTC  600

seq1  CAAAGACCCAAGCCCCACTGCAGAGGGACCAAGAGTCACAGACAGACAGA  650
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCCATGCCCCACTGCAGAGGGACCAAGAGTCACAGACAGACAGA  650

seq1  CAGACAGACAGACAGACAGACAGACAGACAGACAGACGGACAGACATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAGACAGACAGACAGACAGACAGACGGACAGACATCCC  700

seq1  CAGCCTTCCCCTCAAGTG-TTCCCGATACACAGATTTGCCTGACCTTGGC  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCCTTCCCCTCAAGTGTTTCCCGATACACAGATTTGCCTGACCTTGGC  750

seq1  ACCCC-TCATGC-TGGAGGGTCTGT-CCCTAACTCGGGGCCT-GGGGGGA  795
      ||||| |||||| |||||||||||| |||||||||||||||| |||||||
seq2  ACCCCTTCATGCTTGGAGGGTCTGTCCCCTAACTCGGGGCCTGGGGGGGA  800

seq1  CA-CCCCCAGAG-TCTGGAACAGGGTCCTTG-ACCTAGAGGC-AGCTGTT  841
      || | ||||||| ||||||||||||| |||| |||||||||| | | |||
seq2  CATCTCCCAGAGTTCTGGAACAGGGTTCTTGAACCTAGAGGCAATCCGTT  850

seq1  TTGA  845
      ||||
seq2  TTGA  854

seq1: chr4_138222549_138222773
seq2: B6Ng01-200C07.g_73_297 (reverse)

seq1  TCCCACCCCCACCCTACCCCCATGCGCCTCTCCTTCCCCTCTGTAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCCCACCCTACCCCCATGCGCCTCTCCTTCCCCTCTGTAAGATA  50

seq1  TGCCTCTCCTGGGGAAGTGACTCATCCTTGGCCAGCTGTTTAGAGGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCTGGGGAAGTGACTCATCCTTGGCCAGCTGTTTAGAGGACAA  100

seq1  GAAAGGACATCATCCGAGCAGGCAGGAAGATGGATGTCAGCCTTGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACATCATCCGAGCAGGCAGGAAGATGGATGTCAGCCTTGGCAGC  150

seq1  CACAGAACCTGGCCTTGCGGGACTCAGAAGTAAGGGGGAGGGGTACAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACCTGGCCTTGCGGGACTCAGAAGTAAGGGGGAGGGGTACAGCG  200

seq1  TTCTGTGAGTGCTGACCATAGGTGA  225
      |||||||||||||||||||||||||
seq2  TTCTGTGAGTGCTGACCATAGGTGA  225