BAC Information

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BAC

Clone NameB6Ng01-200K11
Chromosome4 (Build37)
Map Location 23,823,586 - 23,954,896
singlet/doubletdoublet
Overlap genenone
Upstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464, LOC623873
Downstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200K11.bB6Ng01-200K11.g
ACCGA021654GA021655
length1,207970
definitionB6Ng01-200K11.b B6Ng01-200K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,823,586 - 23,824,699)(23,953,932 - 23,954,896)
sequence
gaattcctcatatggaggttgtaaaaggcaaactaataggaggaacaaag
tcccagaaaacagacaaaagagtgagagacacagctactttcattattag
gaggcccacaaaaattacagccatagcacatgttcaaaggagctggtgca
aactcatgtacactccctacctgctgcttcagtctttgtgagtccttatg
caccctacgtagttgttttagtggaacatgttgtcctggtgtgcagttca
gagaaaaatgaatgtctcatgttttctctcatttatggatgttaacttga
atcttcagataactgtgatatatttggaatactcatagaattcaaaaagt
tattaagggatcatgagaggaaaatttcaagggaggagagctagaacata
gtggtctaaggataaataatagagcaagaagaattaaatgatatgggtga
ttggatcttatggtagagaacagaatatatgaatggataactaacattaa
aatattaaaaaggtcatatggaaactcactatcacagaaacttctttatc
tacacaatacacataaataaaaagaatttatttgaccagcacaaattgaa
tgtcagggatttttattgttgttattgctttgttttctttttctttcttt
taatagagagaaagaacattaagttgggtgggcatggagaagaggaaggc
tctggggggaagctagggaatagaaaagatagaatcaaaatatacgatat
gacattctcaaagaataactggaaacaaagtgtttaactgaagttcctta
taacggtagaaatgttcccattagacaccataggctaataagaaaagatc
tcggtactagcagaggatggctttttggagctgttgggatactaatgtcc
cctagacctcaaaacatttacagggtttttgctaataacccttctgaact
caaaattaagactttatgactaaaattgtcgcatacttgatatgccataa
cccctagagaagaacctacaactattattttgctaactgtgtattactat
ttaatcaacatccgaatgactaaattgcggtatcattacattaaccctac
acagtgaaggagcttttggaagtaatggagattataccgagatcctgcat
attaatccaaggcagaaagaatgttctctcatgaacacagctcagggcat
attgaca
gaattcagttcatcttcaatctgtcagaacacataagaggtgattctgag
tccttacatcctgggcctgttcatatactgaaataaagagaccaattcca
ctgttgtccagggttttctaaactcattttacaatgggtttccaatgatg
ctgggatgaactcaccttgtagtttcagatgtaggtgggtaatgtttggt
taaggttggatttgttttatttgtgcagatacattctttgcaccacagaa
agttttcatgaatatgattttaaagtaaacccaagaaattcagcatatgg
aggaaatattcttttctagtgtggtaatgaaatatcttatgaatcatcaa
catattagactgggtgtttattcacttgggaagctttccctttgtggaca
ccacaaactaccatcacctctacatatttaatggagataataccaaggac
acccatctgtctcttgggaaagaagtcccagtgatggaatgtttagtgaa
gctagtggtcacatcagctttacaccccttactaacctttcatagttaat
tttggagttgccgactgtatttctgccatgtaaatattattagcatcaat
attcttttcttttttcattttatagacagtgattactcacactgtggaat
taggctttctgtttttatctgtagagtttcagggggtaattttatctttt
ggttggcaattaattgattttttaaaaatttctgaacatgttttcgtagc
ttatgacgctacaattccaattttaataacttgggaaaagggcgtcataa
gctacatatctatgattgtcctacacaaaattttacggggggtttaagtt
aatgaacaaaaattttttgtctgaaaattagctttcttacccgtcatata
cacaatacgaacaactaaagattgggagagatcttatacctagtcgcaga
atctgaaaggggggactaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_23823586_23824699
seq2: B6Ng01-200K11.b_123_1249

seq1  ACAGCTACTTTCATTATTAGGAGGCCCACAAAAATTACAGCCATAGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACTTTCATTATTAGGAGGCCCACAAAAATTACAGCCATAGCACA  50

seq1  TGTTCAAAGGAGCTGGTGCAAACTCATGTACACTCCCTACCTGCTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAGGAGCTGGTGCAAACTCATGTACACTCCCTACCTGCTGCTTC  100

seq1  AGTCTTTGTGAGTCCTTATGCACCCTACGTAGTTGTTTTAGTGGAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGTGAGTCCTTATGCACCCTACGTAGTTGTTTTAGTGGAACATG  150

seq1  TTGTCCTGGTGTGCAGTTCAGAGAAAAATGAATGTCTCATGTTTTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGTGTGCAGTTCAGAGAAAAATGAATGTCTCATGTTTTCTCTC  200

seq1  ATTTATGGATGTTAACTTGAATCTTCAGATAACTGTGATATATTTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGATGTTAACTTGAATCTTCAGATAACTGTGATATATTTGGAAT  250

seq1  ACTCATAGAATTCAAAAAGTTATTAAGGGATCATGAGAGGAAAATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGAATTCAAAAAGTTATTAAGGGATCATGAGAGGAAAATTTCAA  300

seq1  GGGAGGAGAGCTAGAACATAGTGGTCTAAGGATAAATAATAGAGCAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAGCTAGAACATAGTGGTCTAAGGATAAATAATAGAGCAAGAA  350

seq1  GAATTAAATGATATGGGTGATTGGATCTTATGGTAGAGAACAGAATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATGATATGGGTGATTGGATCTTATGGTAGAGAACAGAATATAT  400

seq1  GAATGGATAACTAACATTAAAATATTAAAAAGGTCATATGGAAACTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATAACTAACATTAAAATATTAAAAAGGTCATATGGAAACTCACT  450

seq1  ATCACAGAAACTTCTTTATCTACACAATACACATAAATAAAAAGAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAAACTTCTTTATCTACACAATACACATAAATAAAAAGAATTTA  500

seq1  TTTGACCAGCACAAATTGAATGTCAGGGATTTTTATTGTTGTTATTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCAGCACAAATTGAATGTCAGGGATTTTTATTGTTGTTATTGCTT  550

seq1  TGTTTTCTTTTTCTTTCTTTTAATAGAGAGAAAGAACATTAAGTTGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTTTCTTTCTTTTAATAGAGAGAAAGAACATTAAGTTGGGTG  600

seq1  GGCATGGAGAAGAGGAAGGCTCTGGGGGGAAGCTAGGGAATAGAAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGAGAAGAGGAAGGCTCTGGGGGGAAGCTAGGGAATAGAAAAGAT  650

seq1  AGAATCAAAATATACGATATGACATTCTCAAAGAATAACTGGAAACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAAAATATACGATATGACATTCTCAAAGAATAACTGGAAACAAAG  700

seq1  TGTTTAACTGAAGTTCCTTATAACGGTAGAAATGTTCCCATTAGACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAACTGAAGTTCCTTATAACGGTAGAAATGTTCCCATTAGACACCA  750

seq1  TAGGCTAATAAGAAAAGATCTCGGTACTAGCAGAGGATGGC-TTTTGGAG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGGCTAATAAGAAAAGATCTCGGTACTAGCAGAGGATGGCTTTTTGGAG  800

seq1  CTGTT-GGATACTAATGTCCCCTAGACCTCAAAACA-TTACAGGG-TTTT  846
      ||||| |||||||||||||||||||||||||||||| |||||||| ||||
seq2  CTGTTGGGATACTAATGTCCCCTAGACCTCAAAACATTTACAGGGTTTTT  850

seq1  GCTAATAAACCCTTCTGAACTCAAAATTAAGACTTTATGACTAAAATTGT  896
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAT-AACCCTTCTGAACTCAAAATTAAGACTTTATGACTAAAATTGT  899

seq1  CGCATACTTGATATGCCATAACCCCTAGGAGAGAACCTACAACTATTATT  946
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CGCATACTTGATATGCCATAACCCCTAGAGAAGAACCTACAACTATTATT  949

seq1  TTGCTAACTGTGTA-TACTATTAAATTAACAT-CGAATGACT-AATTGCT  993
      |||||||||||||| ||||||| ||| ||||| ||||||||| |||||| 
seq2  TTGCTAACTGTGTATTACTATTTAATCAACATCCGAATGACTAAATTGCG  999

seq1  GTATCCATACATTAACCCTCACCAGTGAAGGAGCCTTTTGAAGTAAATGA  1043
      |||||  ||||||||||||   |||||||||||| ||| |||||||  ||
seq2  GTATCATTACATTAACCCTACACAGTGAAGGAGCTTTTGGAAGTAATGGA  1049

seq1  GATTAATACAGAGA-CCTGCA-ATT-ATTCAAGGAAGAAAAGAATGTTCT  1090
      |||| |||| |||| |||||| ||| || ||||| || ||||||||||||
seq2  GATT-ATACCGAGATCCTGCATATTAATCCAAGGCAG-AAAGAATGTTCT  1097

seq1  C-CA--GACACAG--CAAGGCATA-TGACA  1114
      | ||   ||||||  || |||||| |||||
seq2  CTCATGAACACAGCTCAGGGCATATTGACA  1127

seq1: chr4_23953932_23954896
seq2: B6Ng01-200K11.g_65_1034 (reverse)

seq1  ATTAGT--CCCCTGTCTGATT-TGGGA-TAGGTA-AAGATCCTTTCCCAA  45
      ||||||  ||||| || |||| || || |||||| ||||| || ||||||
seq2  ATTAGTCCCCCCTTTCAGATTCTGCGACTAGGTATAAGAT-CTCTCCCAA  49

seq1  TCTTTTGGTGGTCTTTTTGTCTTATTGACGGTGTAAGAAAGCTAATTTTC  95
      ||||| | || || | |||| |   |||||| ||||||||||||||||||
seq2  TCTTTAGTTGTTCGTATTGTGTATATGACGG-GTAAGAAAGCTAATTTTC  98

seq1  AGACAAAAATTCTTTGTTCATTGACTT-AACCCCCCTTAAAATTTTGTGT  144
      ||||||||| | |||||||||| |||| |||||||| |||||||||||||
seq2  AGACAAAAAATTTTTGTTCATTAACTTAAACCCCCCGTAAAATTTTGTGT  148

seq1  AGGACAATCATGAATATGTAGCTTATGACGCCATTTTCCCAAGTTAATAA  194
      |||||||||||  ||||||||||||||||||| ||||||||||||| |||
seq2  AGGACAATCATAGATATGTAGCTTATGACGCCCTTTTCCCAAGTTATTAA  198

seq1  ATTTGG-ATTTTAGCGTCATAAGCTACGAAAACATGTTCAGAAATTTTTT  243
      | |||| ||| |||||||||||||||||||||||||||||||||||||| 
seq2  AATTGGAATTGTAGCGTCATAAGCTACGAAAACATGTTCAGAAATTTTTA  248

seq1  AAAAATCAATTAATTGCCAACCAAAAGATAAAATTACCCCCTGAAACTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAATTAATTGCCAACCAAAAGATAAAATTACCCCCTGAAACTCT  298

seq1  ACAGATAAAAACAGAAAGCCTAATTCCACAGTGTGAGTAATCACTGTCTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAAACAGAAAGCCTAATTCCACAGTGTGAGTAATCACTGTCTA  348

seq1  TAAAATGAAAAAAGAAAAGAATATTGATGCTAATAATATTTACATGGCAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAAAAAGAAAAGAATATTGATGCTAATAATATTTACATGGCAG  398

seq1  AAATACAGTCGGCAACTCCAAAATTAACTATGAAAGGTTAGTAAGGGGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTCGGCAACTCCAAAATTAACTATGAAAGGTTAGTAAGGGGTG  448

seq1  TAAAGCTGATGTGACCACTAGCTTCACTAAACATTCCATCACTGGGACTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGATGTGACCACTAGCTTCACTAAACATTCCATCACTGGGACTT  498

seq1  CTTTCCCAAGAGACAGATGGGTGTCCTTGGTATTATCTCCATTAAATATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAAGAGACAGATGGGTGTCCTTGGTATTATCTCCATTAAATATG  548

seq1  TAGAGGTGATGGTAGTTTGTGGTGTCCACAAAGGGAAAGCTTCCCAAGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGATGGTAGTTTGTGGTGTCCACAAAGGGAAAGCTTCCCAAGTG  598

seq1  AATAAACACCCAGTCTAATATGTTGATGATTCATAAGATATTTCATTACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACCCAGTCTAATATGTTGATGATTCATAAGATATTTCATTACC  648

seq1  ACACTAGAAAAGAATATTTCCTCCATATGCTGAATTTCTTGGGTTTACTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAAAAGAATATTTCCTCCATATGCTGAATTTCTTGGGTTTACTT  698

seq1  TAAAATCATATTCATGAAAACTTTCTGTGGTGCAAAGAATGTATCTGCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCATATTCATGAAAACTTTCTGTGGTGCAAAGAATGTATCTGCAC  748

seq1  AAATAAAACAAATCCAACCTTAACCAAACATTACCCACCTACATCTGAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAATCCAACCTTAACCAAACATTACCCACCTACATCTGAAA  798

seq1  CTACAAGGTGAGTTCATCCCAGCATCATTGGAAACCCATTGTAAAATGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGTGAGTTCATCCCAGCATCATTGGAAACCCATTGTAAAATGAG  848

seq1  TTTAGAAAACCCTGGACAACAGTGGAATTGGTCTCTTTATTTCAGTATAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAACCCTGGACAACAGTGGAATTGGTCTCTTTATTTCAGTATAT  898

seq1  GAACAGGCCCAGGATGTAAGGACTCAGAATCACCTCTTATGTGTTCTGAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGCCCAGGATGTAAGGACTCAGAATCACCTCTTATGTGTTCTGAC  948

seq1  AGATTGAAGATGAACTGAATTC  965
      ||||||||||||||||||||||
seq2  AGATTGAAGATGAACTGAATTC  970