BAC Information

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BAC

Clone NameB6Ng01-200L01
Chromosome4 (Build37)
Map Location 39,392,865 - 39,608,264
singlet/doubletdoublet
Overlap gene1700009N14Rik
Upstream geneLOC665520, LOC100039487
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L01.bB6Ng01-200L01.g
ACCGA021682GA021683
length9681,090
definitionB6Ng01-200L01.b B6Ng01-200L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,607,294 - 39,608,264)(39,392,865 - 39,393,949)
sequence
gaattcacagttgctaaaagtgaagttgctcccaacagctgctctaggct
tggctaatttgcctgcattggttagtatgtgcatctgtttgaaaggggag
cctaggtatgaagggaaagtttaaattgaattgaatcccactgaccttgt
aagacgtatcatgttccataactgggatcctacattgctaaataaatgta
aatcaattgcaatcattaaactatgtgtgtatcatcatgggccttttgaa
gtttgcttgtactggtttggagtgttgggatcattttgagagagcttaca
aaccatatattgcttgtttggcagcaagtcattagaggaagcaaggggac
tttccatttgtgtagttgcctgaatatattgctccagaaatataccgcct
gggtgactgcttttgcaagcatattagaatatccagctaatgtatgctag
tctaaccagggatggcagacaaagcccagaccatattttaagcctaatgc
actttgggagcctggaatacaatttgaagtgtaagcccctagggatgcat
gctcatcaatggctggctgcaaacagatttctgtgcaaaccttccatacg
aataactgcagcctgagaattagattatcagaaagctaagaagctaaaat
cacatcaagaagtgatttcagggaagtagaataagagtgaagactgaggc
tgggggatcagtcagatctcatttccaatgtgagagtcattgcttgtcat
ctgggtgtggcttttaccctccctgagcttctgtgttcttgtgtgtaaat
gagaatgctagggcacttttcactggggatggttgaagtctaaagaagta
gttcatgcatagcaacaagtactgtgctcagcaatctctcctctcactga
atggcattgtggctgactttatttgagattgtacatccatgtttgaaaac
cctgaggggaccctcttc
gaattcttttttaggataaaaggagaactgtttggagcacactcatgcac
atgctcacacacacacacacacacacacacacaagggagtaagcaggaca
tggacagggagatctcctagaatagcaagcaagcagaatagagagagaag
catactgggaaagctgtattaagcagaatacatgtcatcagcttgaatcc
acaatttggatctagttgttctttttgctgctccccgacactccttctct
cagaacccctttccaagccaacaatggtccttgacatacctgcacacaca
cacacacacacacacacacaaaataaaagtaaatcaaaagcacacatcca
aaaatttctaaaaatccaaaacagtccaatgagaacgtatttgagaaaac
taaattgtttctcacagaatgcttccaatgacatatttttaactgttggg
aaattgtggtaacattttaaacccttaaatacctctatttaaataagctt
taatcctcactgttttcttatctgttatagatttttaaattattttctgt
aaagatgcaatgttgccaaaaaactggtttttattttcatgtttattaac
aactttttaaaatagaaaaaggaatgccaccataatataggaaaagacag
tacccctttctgttatttcagttttgtttttcaaattccatctcttagat
gatttgatattaaaattttaacaacagcattattatatctattcccacaa
gaggctcttcagcacactggttctgaaaaggtaagaataaaacagagccc
gatgattttagctcaggaaattaatctagtaagctagtcattgtaagtgt
gatagaattacacttttgctctttaactaacttctatgacagtaaaaaga
tttttcttcccaaaaggttgagaggtgaatagataatttcaccaaaactc
tgaaaaaaagtgaacattactacatgactatgattacttaaagacagata
tactggtgatttccaccttctgaaggtgtgaacaagtgacaatttatgtc
cttcaacaaaagtgttgatgaaaacttagcttatttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39607294_39608264
seq2: B6Ng01-200L01.b_44_1011 (reverse)

seq1  GAAGAGGTTCCCCTCAGGGTTTTCAAAACAT-GATGTACAATCTTCAAAT  49
      ||||||| |||||||||||||||| |||||| ||||||||||| ||||||
seq2  GAAGAGGGTCCCCTCAGGGTTTTC-AAACATGGATGTACAATC-TCAAAT  48

seq1  AAAGTCAGCCACAATGCCATTCAGTTGAAAGGAGAGGATTTGCTGAGCAC  99
      |||||||||||||||||||||||| ||| |||||||   |||||||||||
seq2  AAAGTCAGCCACAATGCCATTCAG-TGAGAGGAGAG--ATTGCTGAGCAC  95

seq1  AGTACTTGTTGCTATGCATGAACTGCTTTCTTTAGACTTCAACCAT-CCC  148
      |||||||||||||||||||||||| | ||||||||||||||||||| |||
seq2  AGTACTTGTTGCTATGCATGAACTAC-TTCTTTAGACTTCAACCATCCCC  144

seq1  AGTGAAAAGTGCCCTAGCATTCTCATTTACACACAAGAACACAGAAGCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGTGCCCTAGCATTCTCATTTACACACAAGAACACAGAAGCTC  194

seq1  AGGGAGGGTAAAAGCCACACCCAGATGACAAGCAATGACTCTCACATTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGTAAAAGCCACACCCAGATGACAAGCAATGACTCTCACATTGG  244

seq1  AAATGAGATCTGACTGATCCCCCAGCCTCAGTCTTCACTCTTATTCTACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATCTGACTGATCCCCCAGCCTCAGTCTTCACTCTTATTCTACT  294

seq1  TCCCTGAAATCACTTCTTGATGTGATTTTAGCTTCTTAGCTTTCTGATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAATCACTTCTTGATGTGATTTTAGCTTCTTAGCTTTCTGATAA  344

seq1  TCTAATTCTCAGGCTGCAGTTATTCGTATGGAAGGTTTGCACAGAAATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTCAGGCTGCAGTTATTCGTATGGAAGGTTTGCACAGAAATCT  394

seq1  GTTTGCAGCCAGCCATTGATGAGCATGCATCCCTAGGGGCTTACACTTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGCCAGCCATTGATGAGCATGCATCCCTAGGGGCTTACACTTCA  444

seq1  AATTGTATTCCAGGCTCCCAAAGTGCATTAGGCTTAAAA-GCAGTCTGGG  497
      |||||||||||||||||||||||||||||||||||||||    |||||||
seq2  AATTGTATTCCAGGCTCCCAAAGTGCATTAGGCTTAAAATATGGTCTGGG  494

seq1  CTTTGTCTGCCATCCCTGGTTAGACTAGCATACATTAGCTGGATATTCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTGCCATCCCTGGTTAGACTAGCATACATTAGCTGGATATTCTA  544

seq1  ATATGCTTGCAAAAGCAGTCACCCAGGCGGTATATTTCTGGAGCAATATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTGCAAAAGCAGTCACCCAGGCGGTATATTTCTGGAGCAATATA  594

seq1  TTCAGGCAACTACACAAATGGAAAGTCCCCTTGCTTCCTCTAATGACTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAACTACACAAATGGAAAGTCCCCTTGCTTCCTCTAATGACTTG  644

seq1  CTGCCAAACAAGCAATATATGGTTTGTAAGCTCTCTCAAAATGATCCCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAACAAGCAATATATGGTTTGTAAGCTCTCTCAAAATGATCCCAA  694

seq1  CACTCCAAACCAGTACAAGCAAACTTCAAAAGGCCCATGATGATACACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAACCAGTACAAGCAAACTTCAAAAGGCCCATGATGATACACAC  744

seq1  ATAGTTTAATGATTGCAATTGATTTACATTTATTTAGCAATGTAGGATCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAATGATTGCAATTGATTTACATTTATTTAGCAATGTAGGATCC  794

seq1  CAGTTATGGAACATGATACGTCTTACAAGGTCAGTGGGATTCAATTCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGGAACATGATACGTCTTACAAGGTCAGTGGGATTCAATTCAAT  844

seq1  TTAAACTTTCCCTTCATACCTAGGCTCCCCTTTCAAACAGATGCACATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTCCCTTCATACCTAGGCTCCCCTTTCAAACAGATGCACATAC  894

seq1  TAACCAATGCAGGCAAATTAGCCAAGCCTAGAGCAGCTCTTGGGAGCAAC  947
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAACCAATGCAGGCAAATTAGCCAAGCCTAGAGCAGCTGTTGGGAGCAAC  944

seq1  TTCACTTTTAGCAACTGTGAATTC  971
      ||||||||||||||||||||||||
seq2  TTCACTTTTAGCAACTGTGAATTC  968

seq1: chr4_39392865_39393949
seq2: B6Ng01-200L01.g_66_1155

seq1  GAATTCTTTTTTAGGATAAAAGGAGAACTGTTTGGAGCACACTCATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTAGGATAAAAGGAGAACTGTTTGGAGCACACTCATGCAC  50

seq1  ATGCTCACACACACACACACACACACACACACAAGCAAGTAAGCAGGACA  100
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  ATGCTCACACACACACACACACACACACACACAAGGGAGTAAGCAGGACA  100

seq1  TGGACAGGGAGATCTCCTAGAATAGCAAGCAAGCAGAATAGAGAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGGAGATCTCCTAGAATAGCAAGCAAGCAGAATAGAGAGAGAAG  150

seq1  CATACTGGGAAAGCTGTATTAAGCAGAATACATGTCATCAGCTTGAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGGAAAGCTGTATTAAGCAGAATACATGTCATCAGCTTGAATCC  200

seq1  ACAATTTGGATCTAGTTGTTCTTTTTGCTGCTCCCCGACACTCCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGGATCTAGTTGTTCTTTTTGCTGCTCCCCGACACTCCTTCTCT  250

seq1  CAGAACCCCTTTCCAAGCCAACAATGGTCCTTGACATACCTGCACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCCTTTCCAAGCCAACAATGGTCCTTGACATACCTGCACACACA  300

seq1  CACACACACACACACACACAAAATAAAAGTAAATCAAAAGCACACATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAAAATAAAAGTAAATCAAAAGCACACATCCA  350

seq1  AAAATTTCTAAAAATCCAAAACAGTCCAATGAGAACGTATTTGAGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTAAAAATCCAAAACAGTCCAATGAGAACGTATTTGAGAAAAC  400

seq1  TAAATTGTTTCTCACAGAATGCTTCCAATGACATATTTTTAACTGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTTTCTCACAGAATGCTTCCAATGACATATTTTTAACTGTTGGG  450

seq1  AAATTGTGGTAACATTTTAAACCCTTAAATACCTCTATTTAAATAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGGTAACATTTTAAACCCTTAAATACCTCTATTTAAATAAGCTT  500

seq1  TAATCCTCACTGTTTTCTTATCTGTTATAGATTTTTAAATTATTTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCACTGTTTTCTTATCTGTTATAGATTTTTAAATTATTTTCTGT  550

seq1  AAAGATGCAATGTTGCCAAAAAACTGGTTTTTATTTTCATGTTTATTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCAATGTTGCCAAAAAACTGGTTTTTATTTTCATGTTTATTAAC  600

seq1  AACTTTTTAAAATAGAAAAAGGAATGCCACCATAATATAGGAAAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTAAAATAGAAAAAGGAATGCCACCATAATATAGGAAAAGACAG  650

seq1  TACCCCTTTCTGTTATTTCAGTTTTGTTTTTCAAATTCCATCTCTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTTCTGTTATTTCAGTTTTGTTTTTCAAATTCCATCTCTTAGAT  700

seq1  GATTTGATATTAAAATTTTAACAACAGCATTATTATATCTATT-CCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTTGATATTAAAATTTTAACAACAGCATTATTATATCTATTCCCACAA  750

seq1  GAGGCTCTTCAGCACACTGGTTCTGAAAAGGTAAGAATAAAACAGAG-CC  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGGCTCTTCAGCACACTGGTTCTGAAAAGGTAAGAATAAAACAGAGCCC  800

seq1  GATGA-TTTAGCTCAGGAAATTAATCTAGTAAGCTAGTCATTGTAAGTGT  847
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTAGCTCAGGAAATTAATCTAGTAAGCTAGTCATTGTAAGTGT  850

seq1  GATAGAAATTTACACTTTTGCTCTTTTAACTAACTTCTATGACAGTAAAA  897
      |||||||  |||||||||||||| ||||||||||||||||||||||||||
seq2  GATAGAA--TTACACTTTTGCTC-TTTAACTAACTTCTATGACAGTAAAA  897

seq1  AGA-TTTTCTTCCCAAAAGG-TGAGAGGTGAATAGATAATTTCACCAAAA  945
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATTTTTCTTCCCAAAAGGTTGAGAGGTGAATAGATAATTTCACCAAAA  947

seq1  CTCTGAAAAAAAGTGAACAATAACTACATGACTTATGATTACTTAAAGAC  995
      |||||||||||||||||| || |||||||||| |||||||||||||||||
seq2  CTCTGAAAAAAAGTGAAC-ATTACTACATGAC-TATGATTACTTAAAGAC  995

seq1  AGATATACTGGTGATTTCCACC-TCTGAGGGTGTGAACAAAGTGACAATT  1044
      |||||||||||||||||||||| ||||| ||||||||| |||||||||||
seq2  AGATATACTGGTGATTTCCACCTTCTGAAGGTGTGAAC-AAGTGACAATT  1044

seq1  TATGTTCTTCA--CAGAGTGTTGATGAAAAC-TAGCT--ATTGGAG  1085
      ||||| |||||   | ||||||||||||||| |||||   ||||||
seq2  TATGTCCTTCAACAAAAGTGTTGATGAAAACTTAGCTTATTTGGAG  1090