BAC Information

Click to search

BAC

Clone NameB6Ng01-200P19
Chromosome4 (Build37)
Map Location 115,505,475 - 115,506,576
singlet/doubletsinglet
Overlap geneMobkl2c
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1
Downstream geneMknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200P19.bB6Ng01-200P19.g
ACCGA021887GA021888
length1,1271,171
definitionB6Ng01-200P19.b B6Ng01-200P19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctatgagagtacagaatctaatgataaatgagttgtagcccct
gggtataggcgtttcatacagctcctttggatctgaactttcaggagcga
gcactggtagcacagggtagtgagacatgaccttaccagtggctccagtt
ccctctggtccaccaggctgaactcctggatgaagtagtaaaagtgctta
tagcaggtgttgacatgtgcctccgcccccatgctgaggatgctgtcaaa
gtggtggatgtagacatggacaaagactcggaagagtcgggtcaggatct
tggtgcagacctgctggaagttcttggggaagggaactcctagggatgga
gatgagtggaagaggaatcaaaatcctagggagaaaactctgcctccccc
cacccaggcagtcttcacccctcctccgcacaggacccgtagagaaaggc
agaacaagagtttcgctttctcctatagttttctttttgagtgggaagaa
gtgctggggactgaatctaggaatccattcacaccatgagccctaacccc
agcagatcttaaaatgccttcttcctgctctatcccagatcaccttccac
atttcccactccttaaggtagggctttgcaagcttgtcactggccagtct
gcctcagaccacagtgaaaattatggcataacctttcctcagaaacctga
gcacccatacagatatacatacacaccactttctcctgtacagtccagtg
gggaggttgtcagtacgtgggccagtttttaaaaacatgggccttcgggg
ttaagtcttattatcacagcatggcaaggtgcaaagctttttatgagcca
atcctgatggccctctccagtcgcatgctcagttctgctggcttactgtt
ctcacagctgggctcattactctcccgttcccccacccgcctggccaaca
ctcccaggaacttgcttcagaataagcattcattcctttcagaatattca
atatataaggggactttccctctggtgaggcccagcttgtagagcctgga
gccttttgtactctgccctctggctcttccacaattgttggctgaatggg
ctcctgaatagtcatttcccagatatg
gaattctcacctgaggtaataccgaatggcagagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctgacgtggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttccac
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catttatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacaaaatatgtactcactgataagtggatattagccccaaac
ctaggattcccaagatataaggtacaatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccatggaaggagttacagaaacaaagtatggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcttccaaatgctgacaccattgcatacactagcaagattttactgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaaagtaccagagctaaaggatcttcaaccctata
gtgacacattatgactaccagtacccctgagctctgactctagctgcata
ttgtatcaaaagattgctagtcgccaatcacttgaaagaaagccatgaac
actgcaaacttttgtgtgcctagtacagcaacgccagtcctaagggtgca
aagtgcgtgtatacggccgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115505475_115506576
seq2: B6Ng01-200P19.b_45_1171 (reverse)

seq1  CATATCTGG--AATGACTA-TCA-GAGCC--ATCAGC--ACAATTGT-GA  41
      |||||||||  |||||||| ||| |||||   |||||  |||||||| ||
seq2  CATATCTGGGAAATGACTATTCAGGAGCCCATTCAGCCAACAATTGTGGA  50

seq1  AGAG-CAGAGGGCAGAGGTACAAAGGGC-CCA-GCTC-AC-AGCTGGG-C  85
      |||| ||||||||||| ||||||| ||| ||| |||| || ||||||| |
seq2  AGAGCCAGAGGGCAGA-GTACAAAAGGCTCCAGGCTCTACAAGCTGGGCC  99

seq1  TCA-CAGAGGGAAAGT-CCCTTATATTATTGAATA-TCTG-AAGGAATGA  131
      ||| |||||||||||| |||||||| ||||||||| |||| |||||||||
seq2  TCACCAGAGGGAAAGTCCCCTTATA-TATTGAATATTCTGAAAGGAATGA  148

seq1  ATGC-TATTCTGAAGC-AGTT-CTTGGAGTGTTGG-CAAGCGGGTGGGGG  177
      |||| ||||||||||| |||| || |||||||||| || |||||||||||
seq2  ATGCTTATTCTGAAGCAAGTTCCTGGGAGTGTTGGCCAGGCGGGTGGGGG  198

seq1  -ACGGGAGAGTAATGAG-CCAGCTGTGAGAACAGTAAG-CAGCAGAACTG  224
       |||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  AACGGGAGAGTAATGAGCCCAGCTGTGAGAACAGTAAGCCAGCAGAACTG  248

seq1  AGCATGCGACTGGAGAGGGCCATCAGGATTGGCTCAT-AAAAGCTTTGCA  273
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCATGCGACTGGAGAGGGCCATCAGGATTGGCTCATAAAAAGCTTTGCA  298

seq1  CCTTGCCATGCTGTGATAATAAGACTTAACCCCGAAGGCCCATGTTTTTA  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCATGCTGTGATAATAAGACTTAACCCCGAAGGCCCATGTTTTTA  348

seq1  AAAACTGGCCCACGTACTGACAACCTCCCCACTGGACTGTACAGGAGAAA  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGCCCACGTACTGACAACCTCCCCACTGGACTGTACAGGAGAAA  398

seq1  GTGGTGTGTATGTATATCTGTATGGGTGCTCAGGTTTCTGAGGAAAGGTT  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGTATGTATATCTGTATGGGTGCTCAGGTTTCTGAGGAAAGGTT  448

seq1  ATGCCATAATTTTCACTGTGGTCTGAGGCAGACTGGCCAGTGACAAGCTT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAATTTTCACTGTGGTCTGAGGCAGACTGGCCAGTGACAAGCTT  498

seq1  GCAAAGCCCTACCTTAAGGAGTGGGAAATGTGGAAGGTGATCTGGGATAG  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCCTACCTTAAGGAGTGGGAAATGTGGAAGGTGATCTGGGATAG  548

seq1  AGCAGGAAGAAGGCATTTTAAGATCTGCTGGGGTTAGGGCTCATGGTGTG  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGAAGGCATTTTAAGATCTGCTGGGGTTAGGGCTCATGGTGTG  598

seq1  AATGGATTCCTAGATTCAGTCCCCAGCACTTCTTCCCACTCAAAAAGAAA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTCCTAGATTCAGTCCCCAGCACTTCTTCCCACTCAAAAAGAAA  648

seq1  ACTATAGGAGAAAGCGAAACTCTTGTTCTGCCTTTCTCTACGGGTCCTGT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGAGAAAGCGAAACTCTTGTTCTGCCTTTCTCTACGGGTCCTGT  698

seq1  GCGGAGGAGGGGTGAAGACTGCCTGGGTGGGGGGAGGCAGAGTTTTCTCC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGAGGGGTGAAGACTGCCTGGGTGGGGGGAGGCAGAGTTTTCTCC  748

seq1  CTAGGATTTTGATTCCTCTTCCACTCATCTCCATCCCTAGGAGTTCCCTT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTTGATTCCTCTTCCACTCATCTCCATCCCTAGGAGTTCCCTT  798

seq1  CCCCAAGAACTTCCAGCAGGTCTGCACCAAGATCCTGACCCGACTCTTCC  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGAACTTCCAGCAGGTCTGCACCAAGATCCTGACCCGACTCTTCC  848

seq1  GAGTCTTTGTCCATGTCTACATCCACCACTTTGACAGCATCCTCAGCATG  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTGTCCATGTCTACATCCACCACTTTGACAGCATCCTCAGCATG  898

seq1  GGGGCGGAGGCACATGTCAACACCTGCTATAAGCACTTTTACTACTTCAT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGAGGCACATGTCAACACCTGCTATAAGCACTTTTACTACTTCAT  948

seq1  CCAGGAGTTCAGCCTGGTGGACCAGAGGGAACTGGAGCCACTGGTAAGGT  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTTCAGCCTGGTGGACCAGAGGGAACTGGAGCCACTGGTAAGGT  998

seq1  CATGTCTCACTACCCTGTGCTACCAGTGCTCGCTCCTGAAAGTTCAGATC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCACTACCCTGTGCTACCAGTGCTCGCTCCTGAAAGTTCAGATC  1048

seq1  CAAAGGAGCTGTATGAAACGCCTATACCCAGGGGCTACAACTCATTTATC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCTGTATGAAACGCCTATACCCAGGGGCTACAACTCATTTATC  1098

seq1  ATTAGATTCTGTACTCTCATAGAGAATTC  1102
      |||||||||||||||||||||||||||||
seq2  ATTAGATTCTGTACTCTCATAGAGAATTC  1127