BAC Information

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BAC

Clone NameB6Ng01-202E07
Chromosome4 (Build37)
Map Location 122,212,396 - 122,213,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666927, LOC666931, LOC666937
Downstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202E07.g
ACCGA022810
length1,052
definitionB6Ng01-202E07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttgtcaaatttttatgtggttgctctctcctatgaat
cacacggaatggattgtaggatggatattcgtatattaaccccatgaacc
ctaatgcccatgactgggctgatgaccatatggatattgggcctgtgttc
tcagggatgtgggatgcttcaatacatttttttttttttttttttactgc
tattaggaataacagggagggaggccggcgaggaaaaaaacaaggtgaac
atatatagaggactctgttagttaccaagggaggaaaatataggtagaga
aatttctagaagtaaaacaaatctgtaacattgagagtttggaacacatg
ggtcaaaccctttaggtcatcgaacttaatccatgatttgacttagagtc
attatttttgccactcccagaaacctcttatctcagaacccctctccatg
ctgaggttggtcctttgcacatataggcaaaattcttctacagataaaat
aagtaacaaatatcaagcctgtcaaagtgaaaaaaaaaacaaactaaaat
cataataaatgaaatgggaaagaatgaaaagaaatgtctgcaagaagatg
ggaactggccaacagcagcattgctctttactaaaatgcaagataaaaca
acaaagttctgaggtgagggagcaatcttgggtccctggtccctcaaaga
ctagtctgcacatgtgagagtgcagactaaagaagggacacaacttctgg
gataggcagaagtgacacagctttctgggtacagaccccatttcaggctt
ccagacatccaggcacctttccctaccagaggagagggtggcacccgggg
aggggctcttttcagatcaggtgagggagccattcagtggatgatttata
ttcagaaatccataaacatatcccctttatagcaattcaaagaacaaaac
catatgttcatcttttttaatgctagaatcatttgaacaaatgcaccccc
ccttcatgattaaagtcttggataaattcaggaattcatagccataacct
aa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122212396_122213431
seq2: B6Ng01-202E07.g_79_1116 (reverse)

seq1  TTAGGTATGGGCTTTGAATTCCTGAATTT-TCCAAGACTTTTATCATGAA  49
      ||||||   |||| ||||||||||||||| ||||||||||| ||||||||
seq2  TTAGGTTATGGCTATGAATTCCTGAATTTATCCAAGACTTTAATCATGAA  50

seq1  GGGGTGTTGCATTTTGTCAAATGCTTTCTTAGCATTTAAAAAGATGATCA  99
      |||| | |||||||  ||||||| ||   ||||||| |||||||||| ||
seq2  GGGGGGGTGCATTTGTTCAAATGATT--CTAGCATTAAAAAAGATGAACA  98

seq1  TATGGTTTTTGTCTTTGAATTTGCTTATATAGTGGATTATGTTTATTGAT  149
      |||||||||  |||||||| |||| |||| || ||| ||||||||| |||
seq2  TATGGTTTTGTTCTTTGAA-TTGC-TATAAAGGGGA-TATGTTTATGGAT  145

seq1  TTCTGTATATTAAATCATCACCTG-ATGGCTCCCTCACCTGATCTG-AAA  197
      ||||| ||| |||||||||  ||| ||||||||||||||||||||| |||
seq2  TTCTGAATA-TAAATCATCCACTGAATGGCTCCCTCACCTGATCTGAAAA  194

seq1  GAGCCC--TCCCGGGTGGCCACCTCTCCTCTGGTAGGG-AAGGTGCCTGG  244
      ||||||   |||||||| |  ||||||||||||||||| |||||||||||
seq2  GAGCCCCTCCCCGGGTGCCACCCTCTCCTCTGGTAGGGAAAGGTGCCTGG  244

seq1  ATGTCTGG-AGCCTGAAATGGGGTCTGT-CCCAG-AAGCTGTGTCACTTC  291
      |||||||| ||||||||||||||||||| ||||| |||||||||||||||
seq2  ATGTCTGGAAGCCTGAAATGGGGTCTGTACCCAGAAAGCTGTGTCACTTC  294

seq1  TGCCTATCCCAGAAGTTGTGTCCCTTCTTTAGTCTGCACTCTCACATGTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATCCCAGAAGTTGTGTCCCTTCTTTAGTCTGCACTCTCACATGTG  344

seq1  CAGACTAGTCTTTGAGGGACCAGGGACCCAAGATTGCTCCCTCACCTCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGTCTTTGAGGGACCAGGGACCCAAGATTGCTCCCTCACCTCAG  394

seq1  AACTTTGTTGTTTTATCTTGCATTTTAGTAAAGAGCAATGCTGCTGTTGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTGTTTTATCTTGCATTTTAGTAAAGAGCAATGCTGCTGTTGG  444

seq1  CCAGTTCCCATCTTCTTGCAGACATTTCTTTTCATTCTTTCCCATTTCAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCCATCTTCTTGCAGACATTTCTTTTCATTCTTTCCCATTTCAT  494

seq1  TTCTTATGATTTTAGTTTG-TTTTTTTTTCACTTTGACAGGCTTGATATT  540
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATTATGATTTTAGTTTGTTTTTTTTTTCACTTTGACAGGCTTGATATT  544

seq1  TGTTACTTATTTTATCTGTAGAAGAATTTTGCCTATATGTGCAAAGGACC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTATTTTATCTGTAGAAGAATTTTGCCTATATGTGCAAAGGACC  594

seq1  AACCTCAGCATGGAGAGGGGTTCTGAGATAAGAGGTTTCTGGGAGTGGCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGCATGGAGAGGGGTTCTGAGATAAGAGGTTTCTGGGAGTGGCA  644

seq1  AAAATAATGACTCTAAGTCAAATCATGGATTTATGCTGATGACCTGTGTT  690
      ||||||||||||||||||||||||||||||| |    ||||||||     
seq2  AAAATAATGACTCTAAGTCAAATCATGGATTAAGTTCGATGACCT-AAAG  693

seq1  TGTTTGATCCAGCTGTTCCAAACTCTTTATCTTTATGTTCTGTTTTACTT  740
       |||||| |||  |||||||||||||  || ||   | | ||||||||||
seq2  GGTTTGACCCATGTGTTCCAAACTCTCAATGTTACAGATTTGTTTTACTT  743

seq1  CTAGATATTTCTCTGTCTATATTTTCCTTGCTTGGTATTCTAACAGAGCT  790
      ||||| ||||||||  ||||||||||||  |||||||  |||||||||  
seq2  CTAGAAATTTCTCTACCTATATTTTCCTCCCTTGGTA-ACTAACAGAGTC  792

seq1  CTCTATCTATGTCTTGCTTGATTTTATCTGTGTCAGTTCTCCAAGCAGTT  840
      |||||| |||||    |||| |||| ||  |  | |  ||||        
seq2  CTCTATATATGTTCACCTTGTTTTTTTC-CTCGCCGGCCTCC--------  833

seq1  CTCTCTTTATTTCCT----------AAAAAAAAAAAAAAAAAATCCTCTG  880
      ||| || |  |||||          |||||||||||||||||||    ||
seq2  CTCCCTGTTATTCCTAATAGCAGTAAAAAAAAAAAAAAAAAAATGTATTG  883

seq1  AA-AATCCCATCTCCTTCAGAACACAGGTCCAGTCTCTTATTTTACTATC  929
      ||  ||||||  ||| | |||||||||| ||| | ||  || |    |||
seq2  AAGCATCCCACATCCCTGAGAACACAGGCCCAATATC-CATATGGTCATC  932

seq1  AGCCCAGGCATTTACTCCTGGTTTCATTTGATTAACTTATGAATCAGCAT  979
      ||||||| |||   |    || |||||  | ||||  || ||||   |||
seq2  AGCCCAGTCATGGGCATTAGGGTTCATGGGGTTAATATACGAATATCCAT  982

seq1  CCTACAATCCCTGCCTTTTGATTCATAGGAGAGAGCAAGCACATATTTTT  1029
      |||||||||| | || | |||||||||||||||||||| ||||||     
seq2  CCTACAATCCATTCCGTGTGATTCATAGGAGAGAGCAACCACATA-AAAA  1031

seq1  TTTGACA  1036
      |||||||
seq2  TTTGACA  1038