BAC Information

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BAC

Clone NameB6Ng01-202N13
Chromosome4 (Build37)
Map Location 122,908,965 - 123,058,002
singlet/doubletdoublet
Overlap geneHeyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a
Downstream geneD830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202N13.bB6Ng01-202N13.g
ACCGA023227GA023228
length9831,072
definitionB6Ng01-202N13.b B6Ng01-202N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,057,024 - 123,058,002)(122,908,965 - 122,910,031)
sequence
gaattctgggtttaatttactaacagctcatacttggaactgaagctaaa
agggacttatataaagacaaggcctttctggacctttccagactgtacta
gtgaaatatgtgtgtatggggtctttcaggaaatagatattattgatata
ttttgctaccttcttttgtaggaactacattcccagctgagagccaagga
agagatttacaatcagttgcttgacaagggcaggcttatgctcctcagcc
gtggtgactctgggtctggctcaaaaacagagcagagtgtagcgctcttg
gaacagaagtggcatgcggtcagcagtaaggtggaagagagaaaggtacc
gctgcagagcactgtctgagcagtgtgttcagtgacctgtgacatcactg
tcttcatttttgtagatgggtgtgttgtgatatgtcagagaacttatctc
ataatggactttatattaatctatctgacagtaatctttagtttgtgttc
ctacttacaaagttttgctggagtttataacattgaattaagaagatggg
gacagggcaatgtaagaaatgtgaccagcaattttcttttaaggaatttt
actgaagatcagaagaaaagtaaattatgagctcttcccactagttctca
gaaattggattttcttctttataagagcaaaagaggggatatgaactcaa
ggttttttgttttttgttttgttttttttttttttttcaaaaaagttggg
gtttgtttgatttttttttttttcttttttttttttttaaatggctacag
agtctcattctcttctttgacaatcaggtcaagtataaatcctgcaaata
aactccattgggcattgtcccctcaatcagtagtgagctaggtgttagta
ggaagagtaacaagtagaccagtcgttttgtattgattggtcagaaccaa
accagtttcccatgtactgaagggacattttta
tccttcttcttctgccggagttgctctaactacccatctcctttcgcttg
gccaattgagggttaaatgaattaaaatttacagaacacttagaataaca
gttctcaacctgtgggctgagaccctttggggattgaacaaccttctcac
aagggttgcctaagaccataaaagaaaacacagatatttacattatgatt
cataacagtagcaaaattatagttatgaagtagcaatgaaaataatttta
tggttgggggtcaccacagcatgaagctttgtattaaagggtcacagcac
taagaaggctgagaaccactggcttaggtacctttccagctgctgtgaga
agcactcaccaaacagtaactaacaggctccgccgcctctccatccattt
gccctctcccaaagctttaaaggccgtccattacctaatgacttccaaac
ttaaatctctttgccgaaccccatagtccctatttaactgtgcagtgtat
tttgaggacctgggacgtctctcgagaacatgcctacctcagagccctta
ccttcccctgcaaatctgccagccctttctctctcagccaatcacataga
gcaaacaagtatctgcctttctaggaaatgcctagtgcacacattgggca
ctcttcacactggttgaggttctcactgttttggcaggtgcccacagaaa
ttatgtgagtgctgagggcatttggaacaggagaattggtgcttgcggct
gcggtggccagcagagtttcctgatggcgaccgttcatgccagtcctatc
tggtcatctatgagcatgataagtttctgtgcttggccaagtggttacgt
gtgggtctgagtggcaagaggcctgttctttcccatcaggaagtatctgc
caggcagagctgactatggttgaaagtgtgtgtagtcagctttcaggtga
ccaaccccactttccttacaacaaaagcttggcttttcttttgttgcctg
tccagtgagcagacaagggagaggactcctctgtgccttgctcaccatac
cccacttcccaccatctccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123057024_123058002
seq2: B6Ng01-202N13.b_47_1029 (reverse)

seq1  TAAAAATGTCCC-TCAGTACATGGG-AACTTGTTTGTGTTCTGACCAA-C  47
      |||||||||||| |||||||||||| |||| ||||| ||||||||||| |
seq2  TAAAAATGTCCCTTCAGTACATGGGAAACTGGTTTG-GTTCTGACCAATC  49

seq1  CATTCCAAACGACTGGTCTACTTGTTTACTCTTCCTACTAACACCTAGCT  97
       || | |||||||||||||||||| |||||||||||||||||||||||||
seq2  AATACAAAACGACTGGTCTACTTG-TTACTCTTCCTACTAACACCTAGCT  98

seq1  CACTACTGATTGAGGGGAC-ATGCCCAAT-GAGTTTATTTGCAGATTTTA  145
      ||||||||||||||||||| ||||||||| ||||||||||||||  ||||
seq2  CACTACTGATTGAGGGGACAATGCCCAATGGAGTTTATTTGCAGGATTTA  148

seq1  TACTTGACCTGATTGTCAAAGAAGAGAATGAGACTCTGTAGCCATTTAAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACCTGATTGTCAAAGAAGAGAATGAGACTCTGTAGCCATTTAAA  198

seq1  AAAAAAAAAAAG-AAAAAAAAAAAATCAAACAAACCCCAACTTTTTTGAA  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAAAAAAAAAAAAATCAAACAAACCCCAACTTTTTTGAA  248

seq1  AAAAAAAAAAAAAACAAAACAAAAAACAAAAAACCTTGAGTTCATATCCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACAAAACAAAAAACAAAAAACCTTGAGTTCATATCCC  298

seq1  CTCTTTTGCTCTTATAAAGAAGAAAATCCAATTTCTGAGAACTAGTGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGCTCTTATAAAGAAGAAAATCCAATTTCTGAGAACTAGTGGGA  348

seq1  AGAGCTCATAATTTACTTTTCTTCTGATCTTCAGTAAAATTCCTTAAAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCATAATTTACTTTTCTTCTGATCTTCAGTAAAATTCCTTAAAAG  398

seq1  AAAATTGCTGGTCACATTTCTTACATTGCCCTGTCCCCATCTTCTTAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTGGTCACATTTCTTACATTGCCCTGTCCCCATCTTCTTAATT  448

seq1  CAATGTTATAAACTCCAGCAAAACTTTGTAAGTAGGAACACAAACTAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTATAAACTCCAGCAAAACTTTGTAAGTAGGAACACAAACTAAAG  498

seq1  ATTACTGTCAGATAGATTAATATAAAGTCCATTATGAGATAAGTTCTCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTCAGATAGATTAATATAAAGTCCATTATGAGATAAGTTCTCTG  548

seq1  ACATATCACAACACACCCATCTACAAAAATGAAGACAGTGATGTCACAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCACAACACACCCATCTACAAAAATGAAGACAGTGATGTCACAGG  598

seq1  TCACTGAACACACTGCTCAGACAGTGCTCTGCAGCGGTACCTTTCTCTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAACACACTGCTCAGACAGTGCTCTGCAGCGGTACCTTTCTCTCT  648

seq1  TCCACCTTACTGCTGACCGCATGCCACTTCTGTTCCAAGAGCGCTACACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTACTGCTGACCGCATGCCACTTCTGTTCCAAGAGCGCTACACT  698

seq1  CTGCTCTGTTTTTGAGCCAGACCCAGAGTCACCACGGCTGAGGAGCATAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTTTTTGAGCCAGACCCAGAGTCACCACGGCTGAGGAGCATAA  748

seq1  GCCTGCCCTTGTCAAGCAACTGATTGTAAATCTCTTCCTTGGCTCTCAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCTTGTCAAGCAACTGATTGTAAATCTCTTCCTTGGCTCTCAGC  798

seq1  TGGGAATGTAGTTCCTACAAAAGAAGGTAGCAAAATATATCAATAATATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGTAGTTCCTACAAAAGAAGGTAGCAAAATATATCAATAATATC  848

seq1  TATTTCCTGAAAGACCCCATACACACATATTTCACTAGTACAGTCTGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGAAAGACCCCATACACACATATTTCACTAGTACAGTCTGGAA  898

seq1  AGGTCCAGAAAGGCCTTGTCTTTATATAAGTCCCTTTTAGCTTCAGTTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGAAAGGCCTTGTCTTTATATAAGTCCCTTTTAGCTTCAGTTCC  948

seq1  AAGTATGAGCTGTTAGTAAATTAAACCCAGAATTC  979
      |||||||||||||||||||||||||||||||||||
seq2  AAGTATGAGCTGTTAGTAAATTAAACCCAGAATTC  983

seq1: chr4_122908965_122910031
seq2: B6Ng01-202N13.g_79_1150

seq1  TCCTTCTTCTTCTGCCGGAGTTGCTCTAACTACCCATCTCCTTTCGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCTTCTGCCGGAGTTGCTCTAACTACCCATCTCCTTTCGCTTG  50

seq1  GCCAATTGAGGGTTAAATGAATTAAAATTTACAGAACACTTAGAATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTGAGGGTTAAATGAATTAAAATTTACAGAACACTTAGAATAACA  100

seq1  GTTCTCAACCTGTGGGCTGAGACCCTTTGGGGATTGAACAACCTTCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAACCTGTGGGCTGAGACCCTTTGGGGATTGAACAACCTTCTCAC  150

seq1  AAGGGTTGCCTAAGACCATAAAAGAAAACACAGATATTTACATTATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGCCTAAGACCATAAAAGAAAACACAGATATTTACATTATGATT  200

seq1  CATAACAGTAGCAAAATTATAGTTATGAAGTAGCAATGAAAATAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGTAGCAAAATTATAGTTATGAAGTAGCAATGAAAATAATTTTA  250

seq1  TGGTTGGGGGTCACCACAGCATGAAGCTTTGTATTAAAGGGTCACAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGGGTCACCACAGCATGAAGCTTTGTATTAAAGGGTCACAGCAC  300

seq1  TAAGAAGGCTGAGAACCACTGGCTTAGGTACCTTTCCAGCTGCTGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCTGAGAACCACTGGCTTAGGTACCTTTCCAGCTGCTGTGAGA  350

seq1  AGCACTCACCAAACAGTAACTAACAGGCTCCGCCGCCTCTCCATCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCACCAAACAGTAACTAACAGGCTCCGCCGCCTCTCCATCCATTT  400

seq1  GCCCTCTCCCAAAGCTTTAAAGGCCGTCCATTACCTAATGACTTCCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCCCAAAGCTTTAAAGGCCGTCCATTACCTAATGACTTCCAAAC  450

seq1  TTAAATCTCTTTGCCGAACCCCATAGTCCCTATTTAACTGTGCAGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTCTTTGCCGAACCCCATAGTCCCTATTTAACTGTGCAGTGTAT  500

seq1  TTTGAGGACCTGGGACGTCTCTCGAGAACATGCCTACCTCAGAGCCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGACCTGGGACGTCTCTCGAGAACATGCCTACCTCAGAGCCCTTA  550

seq1  CCTTCCCCTGCAAATCTGCCAGCCCTTTCTCTCTCAGCCAATCACATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTGCAAATCTGCCAGCCCTTTCTCTCTCAGCCAATCACATAGA  600

seq1  GCAAACAAGTATCTGCCTTTCTAGGAAATGCCTAGTGCACACATTGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGTATCTGCCTTTCTAGGAAATGCCTAGTGCACACATTGGGCA  650

seq1  CTCTTCACACTGGTTGAGGTTCTCACTGTTTTGGCAGGTGCCCACAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACACTGGTTGAGGTTCTCACTGTTTTGGCAGGTGCCCACAGAAA  700

seq1  TTATGTGAGTGCTGAGGGCATTTGGAACAGGAGAATTGGTGCTTGCGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAGTGCTGAGGGCATTTGGAACAGGAGAATTGGTGCTTGCGGCT  750

seq1  GCGGTGGCCAGCAGAGTTTCCTGATGGCGACCGTTCATGCCAGTCCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGCCAGCAGAGTTTCCTGATGGCGACCGTTCATGCCAGTCCTATC  800

seq1  TGGTCATCTATGAGCATGATAAGTTTCTGTGCTTGGCCAAGTGGTTACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCTATGAGCATGATAAGTTTCTGTGCTTGGCCAAGTGGTTACGT  850

seq1  GTGGGTCTGAGTGGCAAGAGGCCTGTTCTTTCCCATCAGGAAGTATCTG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGGTCTGAGTGGCAAGAGGCCTGTTCTTTCCCATCAGGAAGTATCTGC  900

seq1  CAAGCAGAGCTGACTATGG-TGAAAGTGTGTGTAGTCAGC-TTCAGGTGA  947
      || |||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CAGGCAGAGCTGACTATGGTTGAAAGTGTGTGTAGTCAGCTTTCAGGTGA  950

seq1  CCAACCCCAC-TTCCCTACACCAAAAGC-TGGC-TTTCTTTTG-TGCCTG  993
      |||||||||| |||| |||| ||||||| |||| ||||||||| ||||||
seq2  CCAACCCCACTTTCCTTACAACAAAAGCTTGGCTTTTCTTTTGTTGCCTG  1000

seq1  TCCCAGTGAGCAGAACAAAGGGAGAGGACTCCTCTGGTGCCCTGCCCACC  1043
      | ||||||||||||   |||||||||||||||||| ||||| ||| ||||
seq2  T-CCAGTGAGCAGA--CAAGGGAGAGGACTCCTCT-GTGCCTTGCTCACC  1046

seq1  ACACCCACCT--CCACCATCTCCCTG  1067
      | ||||  ||  ||||||||||||||
seq2  ATACCCCACTTCCCACCATCTCCCTG  1072