BAC Information

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BAC

Clone NameB6Ng01-203N19
Chromosome4 (Build37)
Map Location 84,513,836 - 84,649,341
singlet/doubletdoublet
Overlap geneD530005L17Rik, LOC622811
Upstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284
Downstream geneLOC100040303, Sh3gl2, A930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203N19.bB6Ng01-203N19.g
ACCGA023963GA023964
length8831,021
definitionB6Ng01-203N19.b B6Ng01-203N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,648,461 - 84,649,341)(84,513,836 - 84,514,857)
sequence
gaattctcctaagtggctatcaaaagtattggtatgttcataccaagaag
tgttttatatcatagatatatagaaatttttgataaagaaaaataacata
caaaatgtcaatgctttcctggaatgctcagaaaaaaaaacctattattt
aacagaaaatttagaatattttcagataactgctgcaaggttgttaaaag
gaagtatattctaatacctaaaatagccattaaattttaagatacttatt
ttaattttgtggcagacatttaaatttagtgtgtattggattcttcatct
ttaaaatataacatatttatatatattataggacacaaagaatgaattaa
aacttgaattttgagaatataacatttatcatcaatcaatatataatcat
atttatgtgtgtttctgtttgatagtacctttttaatgtatcatgctgat
ccattaatattcagtatcaccagcactataacttcaacctaaaggaaatc
tatctaatatatacattgtctccataagttatgttatagtgactgtctat
ccttagaaaggtaaattttctttaagtacattatatttattttattagat
aatttttatttacattttaaatgctatcctgaaagttccctataccccct
cccccgccctgccagcctggcagttaggatgatgattgtatttcatctga
gaaagagagagagaggaagtgagaggaaattgagaggaaagcaagggggg
ggggacgacagacacacagagatacagagacagagagatatagagagaca
gaaatagagaaagacagagagagatgctagacatggaaagagaaggaaga
aggaaagaggaagagggggagaaaaggaggagg

gaattcataacagaggaatctcaagcgggtgaaaagcacctaaagaaatg
ttcaaagttcttagtggtcagggaaatgcaaatcaaaatgaccctgagat
tccaccttacaccaatcagaatggctaagttcaaaacctcaggtgacagc
acatgttggctaggatgtacagaaagaggaacacttctccattgctggtg
ggattgtaaactggtacagccactctggaggttcctcagaaaattggaaa
ttgatctacttgaagacccaactatatacccaaaagatgccccaccatgc
cacagggtcatgtgttccactatgttcatagcaatctaatttgtgatagt
cttacatttatatttaggatacattttaaatttttatgtaagatatatag
tattagttgaaattgaaaaatatgtccaataccaaatgatcatctctgaa
aacataaatagaactaacattacacagactgagtaggtcaaacagttaat
gaaaaagagaccatgaattagaaagggagcaaggaggggtgtatgggagg
ttttagaaggaagaaagtaaaggagaaaataatctaaccatattataatc
tcaaaaataaaagaaatatacagcttttaaaagtgagcaggattttttcc
tttgaacttttcacatttaccagaaattaatctaccacactttgaacagt
atttgagctatttctgcatctcatttgttctttgaatttatggtctgttt
ctttctcccttaccaaactttcttagttaatataactttatgttaagaca
aaattaggagccataaattttctaactttgtttttatttttgtaattgtt
tcttttcttctatgttgttgggtccaggaaattgccacagaaaccataag
tacaccatctcagttaatcaagaatagtttatagaatgcataccatatac
tgggacatccaggaaaaccagacgaaaaacctaattgtgccagtggtctg
tctcagagcaaacctttttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84648461_84649341
seq2: B6Ng01-203N19.b_49_931 (reverse)

seq1  CCTCCTCCTTTTCTCCCCCTCTTCCTC-TTCCTTCTTCCTTCTC-TTCCA  48
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CCTCCTCCTTTTCTCCCCCTCTTCCTCTTTCCTTCTTCCTTCTCTTTCCA  50

seq1  TGTCTAGCATCTCTCTCTGTCTTTCTCTATTTCTGTCTCTCTATATCTCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGCATCTCTCTCTGTCTTTCTCTATTTCTGTCTCTCTATATCTCT  100

seq1  CTGTCTCTGTATCTCTGTGTGTCTGTCGTCCCCCCCCCCTTGCTTTCCTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTATCTCTGTGTGTCTGTCGTCCCCCCCCCCTTGCTTTCCTC  150

seq1  TCAATTTCCTCTCACTTCCTCTCTCTCTCTTTCTCAGATGAAATACAATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCCTCTCACTTCCTCTCTCTCTCTTTCTCAGATGAAATACAATC  200

seq1  ATCATCCTAACTGCCAGGCTGGCAGGGCGGGGGAGGGGGTATAGGGAACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTAACTGCCAGGCTGGCAGGGCGGGGGAGGGGGTATAGGGAACT  250

seq1  TTCAGGATAGCATTTAAAATGTAAATAAAAATTATCTAATAAAATAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATAGCATTTAAAATGTAAATAAAAATTATCTAATAAAATAAATA  300

seq1  TAATGTACTTAAAGAAAATTTACCTTTCTAAGGATAGACAGTCACTATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACTTAAAGAAAATTTACCTTTCTAAGGATAGACAGTCACTATAA  350

seq1  CATAACTTATGGAGACAATGTATATATTAGATAGATTTCCTTTAGGTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTATGGAGACAATGTATATATTAGATAGATTTCCTTTAGGTTGA  400

seq1  AGTTATAGTGCTGGTGATACTGAATATTAATGGATCAGCATGATACATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGTGCTGGTGATACTGAATATTAATGGATCAGCATGATACATTA  450

seq1  AAAAGGTACTATCAAACAGAAACACACATAAATATGATTATATATTGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTACTATCAAACAGAAACACACATAAATATGATTATATATTGATT  500

seq1  GATGATAAATGTTATATTCTCAAAATTCAAGTTTTAATTCATTCTTTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAAATGTTATATTCTCAAAATTCAAGTTTTAATTCATTCTTTGTG  550

seq1  TCCTATAATATATATAAATATGTTATATTTTAAAGATGAAGAATCCAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAATATATATAAATATGTTATATTTTAAAGATGAAGAATCCAATA  600

seq1  CACACTAAATTTAAATGTCTGCCACAAAATTAAAATAAGTATCTTAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAAATTTAAATGTCTGCCACAAAATTAAAATAAGTATCTTAAAAT  650

seq1  TTAATGGCTATTTTAGGTATTAGAATATACTTCCTTTTAACAACCTTGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTATTTTAGGTATTAGAATATACTTCCTTTTAACAACCTTGCA  700

seq1  GCAGTTATCTGAAAATATTCTAAATTTTCTGTTAAATAATAGGTTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATCTGAAAATATTCTAAATTTTCTGTTAAATAATAGGTTTTTTT  750

seq1  TTCTGAGCATTCCAGGAAAGCATTGACATTTTGTATGTTATTTTTCTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCATTCCAGGAAAGCATTGACATTTTGTATGTTATTTTTCTTTA  800

seq1  TCAAAAATTTCTATATATCTATGATATAAAACACTTCTTGGTATGAACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTTCTATATATCTATGATATAAAACACTTCTTGGTATGAACAT  850

seq1  ACCAATACTTTTGATAGCCACTTAGGAGAATTC  881
      |||||||||||||||||||||||||||||||||
seq2  ACCAATACTTTTGATAGCCACTTAGGAGAATTC  883


seq1: chr4_84513836_84514857
seq2: B6Ng01-203N19.g_65_1085

seq1  GAATTCATAACAGAGGAATCTCAAGCGGGTGAAAAGCACCTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACAGAGGAATCTCAAGCGGGTGAAAAGCACCTAAAGAAATG  50

seq1  TTCAAAGTTCTTAGTGGTCAGGGAAATGCAAATCAAAATGACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTTCTTAGTGGTCAGGGAAATGCAAATCAAAATGACCCTGAGAT  100

seq1  TCCACCTTACACCAATCAGAATGGCTAAGTTCAAAACCTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTACACCAATCAGAATGGCTAAGTTCAAAACCTCAGGTGACAGC  150

seq1  ACATGTTGGCTAGGATGTACAGAAAGAGGAACACTTCTCCATTGCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGCTAGGATGTACAGAAAGAGGAACACTTCTCCATTGCTGGTG  200

seq1  GGATTGTAAACTGGTACAGCCACTCTGGAGGTTCCTCAGAAAATTGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAAACTGGTACAGCCACTCTGGAGGTTCCTCAGAAAATTGGAAA  250

seq1  TTGATCTACTTGAAGACCCAACTATATACCCAAAAGATGCCCCACCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTACTTGAAGACCCAACTATATACCCAAAAGATGCCCCACCATGC  300

seq1  CACAGGGTCATGTGTTCCACTATGTTCATAGCAATCTAATTTGTGATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTCATGTGTTCCACTATGTTCATAGCAATCTAATTTGTGATAGT  350

seq1  CTTACATTTATATTTAGGATACATTTTAAATTTTTATGTAAGATATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTATATTTAGGATACATTTTAAATTTTTATGTAAGATATATAG  400

seq1  TATTAGTTGAAATTGAAAAATATGTCCAATACCAAATGATCATCTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTGAAATTGAAAAATATGTCCAATACCAAATGATCATCTCTGAA  450

seq1  AACATAAATAGAACTAACATTACACAGACTGAGTAGGTCAAACAGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATAGAACTAACATTACACAGACTGAGTAGGTCAAACAGTTAAT  500

seq1  GAAAAAGAGACCATGAATTAGAAAGGGAGCAAGGAGGGGTGTATGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGACCATGAATTAGAAAGGGAGCAAGGAGGGGTGTATGGGAGG  550

seq1  TTTTAGAAGGAAGAAAGTAAAGGAGAAAATAATCTAACCATATTATAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGGAAGAAAGTAAAGGAGAAAATAATCTAACCATATTATAATC  600

seq1  TCAAAAATAAAAGAAATATACAGCTTTTAAAAGTGAGCAGGATTTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAAAAGAAATATACAGCTTTTAAAAGTGAGCAGGATTTTTTCC  650

seq1  TTTGAACTTTTCACATTTACCAGAAATTAATCTACCACACTTTGAACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTTTTCACATTTACCAGAAATTAATCTACCACACTTTGAACAGT  700

seq1  ATTTGAGCTATTTCTGCATCTCATTTGTTCTTTGAATTTATGGTCTG-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTGAGCTATTTCTGCATCTCATTTGTTCTTTGAATTTATGGTCTGTTT  750

seq1  CTTTCTCCCTTACCAAACTTTCTTAGTTAATATAACTTTATGTTAAGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCTTACCAAACTTTCTTAGTTAATATAACTTTATGTTAAGACA  800

seq1  AAATTAGGAGCCATAAATTTTCTAACTTTGTTTTTATTTTTGTAATTG-T  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATTAGGAGCCATAAATTTTCTAACTTTGTTTTTATTTTTGTAATTGTT  850

seq1  TCTTTTCTTCTATGTTGTTGGGGTCCAGGAAATTGCCACAGAAACCATAA  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCTATGTTGTT-GGGTCCAGGAAATTGCCACAGAAACCATAA  899

seq1  GTACACCAATCTCAGTTAATCAAGAATAGTTTATAGAATGCATACCATAA  948
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GTACACC-ATCTCAGTTAATCAAGAATAGTTTATAGAATGCATACCAT-A  947

seq1  TACT-GGACATCCAGGAAAACAAGAAGGAAAAACCTAATTGTGCCAGTGG  997
      |||| |||||||||||||||| || | |||||||||||||||||||||||
seq2  TACTGGGACATCCAGGAAAACCAG-ACGAAAAACCTAATTGTGCCAGTGG  996

seq1  TCTGTCCTCAGAGCAGA-CTTTTTAT  1022
      ||||| ||||||||| | ||||||||
seq2  TCTGT-CTCAGAGCAAACCTTTTTAT  1021


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