BAC Information

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BAC

Clone NameB6Ng01-203P17
Chromosome4 (Build37)
Map Location 46,403,332 - 46,601,519
singlet/doubletdoublet
Overlap geneHemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a
Upstream geneMcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik
Downstream geneTbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203P17.bB6Ng01-203P17.g
ACCGA024050GA024051
length7541,085
definitionB6Ng01-203P17.b B6Ng01-203P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,600,972 - 46,601,519)(46,403,332 - 46,404,423)
sequence
gaattcactctgtagaccaggctggcttcaaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaagcctgtgccaccgttgcccagctt
taatgtgttttttaattggttattttatttatttgcatttcaaatggtat
ccccattcctagtttcccctccacaagccccctatcctctcctccctccc
cctgcttctataagggtgctcccccgctctccccccaatcctgcctcagc
acccgagcattcccctatcctggatcatcaagcctccacaggaccaaggg
gctcccctcccagtgataaggccatcctctgctacatatccagctggagc
catgggttcccccctgtatactctttggttggtggtttagtccctgggag
ctttggggaatctagtttgttgatattgttgttcttctagtggggtacaa
accccttcagctcctacagtccttgccctaacttccccattggggtcccc
acacttggtcaaatgtttggctgtgtgcatccgtgtctgtattggtcagg
ttccagcagagcctctcatgagacagctatatcaggctcctgtcagcaag
cgtctcttggcatccacaatagtgtctgggtttgctgtctgcatgtggga
tggatcccccagtttggggcagttgctggacagccttccctttcagtctc
tgctacactctcagacaaggtgttaactgtttaattgtatttcatgtaat
gtgt
gaattcttaagttaaaactgatactgtgccctctgtcagttttgtccatg
aaatttccaaaagttttttacccccctttttcttgtagaagatagagttg
ttgtctagctggagaaacaagtttgtgtgcctttgggcaacacgtacacg
ctgtaaaaatgggctaagctgcagttgccactagtcggcgctgttaataa
gacagtcaaaagtgaaaggggcttgccctccatcaagatctgccactcac
tgcgtctaattcccaactctgccaaccactgagactcaaaaccaagtaga
cttggagatactagacctaggaatctgtcattaaaaatagcggagcaaaa
ggagctggagcgatggctcagcagttcaaagcaccagccaagtttccaga
ggattcaggtttgattctcagtacccacgtagtagctcgcaacttatggt
aactccacttccaggggatctgatgcctcttctgacctccacaggcacct
acacacacatttaaaagctgggcctgatggctcatgttataatcccagca
ctggggagacagaggcaggcagatctccgagttggaggtaagccagagct
acgaacacacaatttttttttttttaaagtctttaggtgtagctcaggta
tacccagaacccttcctgccacaagaagagggcagcacaaagtggagatt
cttagaggttctaattcattacctcaaagctctaaaccaacaagaaaaaa
ggaataatttgattcgctctggagtctagatatgaatagtaagaaaataa
tgaatttatagggaatggtaaaagaaaatgaatggtggagatgggttcag
tgggtaaggaaggcacttgccatgcaagtaagggactagactttgggtgc
tcagccaccatgtaatgctgagtgggtgtagcgacctgcaagagggaaga
acaggtagccctggacaagctggctagtagactacctcaagtagtgggct
ctgggtcaggtgagagcccctatctgactattagctgagagccatttgga
tagacagaactcacctgtggtttcataggccttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_46600972_46601519
seq2: B6Ng01-203P17.b_264_803 (reverse)

seq1  ACACATACCAAACACA-TACATGAAATACAATTAAACAGTTAACACCTTG  49
                 ||||| |||||||||||||||||||||||||||||||||
seq2  -----------ACACATTACATGAAATACAATTAAACAGTTAACACCTTG  39

seq1  TCCTGAGAGTGTAGCAGAGACTG-AAGGGAAGGCTGTCCAGCAACTGCCC  98
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  T-CTGAGAGTGTAGCAGAGACTGAAAGGGAAGGCTGTCCAGCAACTGCCC  88

seq1  C-AACT-GGGGATCCATCCCACATGCAGACAGCAAACCCAGACACTATTG  146
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGGGGATCCATCCCACATGCAGACAGCAAACCCAGACACTATTG  138

seq1  TGGATGCCAAGAGACGCTTGCTGACAGGAGCCTGATATAGCTGTCTCATG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCAAGAGACGCTTGCTGACAGGAGCCTGATATAGCTGTCTCATG  188

seq1  AGAGGCTCTGCTGGAACCTGACCAATACAGACACGGATGCACACAGCCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTGCTGGAACCTGACCAATACAGACACGGATGCACACAGCCAA  238

seq1  ACATTTGACCAAGTGTGGGGACCCCAATGGGGAAGTTAGGGCAAGGACTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGACCAAGTGTGGGGACCCCAATGGGGAAGTTAGGGCAAGGACTG  288

seq1  TAGGAGCTGAAGGGGTTTGTACCCCACTAGAAGAACAACAATATCAACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTGAAGGGGTTTGTACCCCACTAGAAGAACAACAATATCAACAA  338

seq1  ACTAGATTCCCCAAAGCTCCCAGGGACTAAACCACCAACCAAAGAGTATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTCCCCAAAGCTCCCAGGGACTAAACCACCAACCAAAGAGTATA  388

seq1  CAGGGGGGAACCCATGGCTCCAGCTGGATATGTAGCAGAGGATGGCCTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGGAACCCATGGCTCCAGCTGGATATGTAGCAGAGGATGGCCTTA  438

seq1  TCACTGGGAGGGGAGCCCCTTGGTCCTGTGGAGGCTTGATGATCCAGGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGAGGGGAGCCCCTTGGTCCTGTGGAGGCTTGATGATCCAGGAT  488

seq1  AGGGGAATGCTCGGGTGCTGAGGCAGGATTGGGGGGAGAGCGGGGGAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATGCTCGGGTGCTGAGGCAGGATTGGGGGGAGAGCGGGGGAGCA  538

seq1  CC  548
      ||
seq2  CC  540

seq1: chr4_46403332_46404423
seq2: B6Ng01-203P17.g_64_1148

seq1  GAATTCTTAAGTTAAAACTGATACTGTGCCCTCTGTCAGTTTTGTCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTTAAAACTGATACTGTGCCCTCTGTCAGTTTTGTCCATG  50

seq1  AAATTTCCAAAAGTTTTTTACCCCCCTTTTTCTTGTAGAAGATAGAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAAAAGTTTTTTACCCCCCTTTTTCTTGTAGAAGATAGAGTTG  100

seq1  TTGTCTAGCTGGAGAAACAAGTTTGTGTGCCTTTGGGCAACACGTACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGCTGGAGAAACAAGTTTGTGTGCCTTTGGGCAACACGTACACG  150

seq1  CTGTAAAAATGGGCTAAGCTGCAGTTGCCACTAGTCGGCGCTGTTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAATGGGCTAAGCTGCAGTTGCCACTAGTCGGCGCTGTTAATAA  200

seq1  GACAGTCAAAAGTGAAAGGGGCTTGCCCTCCATCAAGATCTGCCACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCAAAAGTGAAAGGGGCTTGCCCTCCATCAAGATCTGCCACTCAC  250

seq1  TGCGTCTAATTCCCAACTCTGCCAACCACTGAGACTCAAAACCAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTAATTCCCAACTCTGCCAACCACTGAGACTCAAAACCAAGTAGA  300

seq1  CTTGGAGATACTAGACCTAGGAATCTGTCATTAAAAATAGCGGAGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATACTAGACCTAGGAATCTGTCATTAAAAATAGCGGAGCAAAA  350

seq1  GGAGCTGGAGCGATGGCTCAGCAGTTCAAAGCACCAGCCAAGTTTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGCGATGGCTCAGCAGTTCAAAGCACCAGCCAAGTTTCCAGA  400

seq1  GGATTCAGGTTTGATTCTCAGTACCCACGTAGTAGCTCGCAACTTATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGGTTTGATTCTCAGTACCCACGTAGTAGCTCGCAACTTATGGT  450

seq1  AACTCCACTTCCAGGGGATCTGATGCCTCTTCTGACCTCCACAGGCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACTTCCAGGGGATCTGATGCCTCTTCTGACCTCCACAGGCACCT  500

seq1  ACACACACATTTAAAAGCTGGGCCTGATGGCTCATGTTATAATCCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATTTAAAAGCTGGGCCTGATGGCTCATGTTATAATCCCAGCA  550

seq1  CTGGGGAGACAGAGGCAGGCAGATCTCCGAGTTGGAGGTAAGCCAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGACAGAGGCAGGCAGATCTCCGAGTTGGAGGTAAGCCAGAGCT  600

seq1  ACGAACACACAATTTTTTTTTTTTTAAAGTCTTTAGGTGTAGCTCAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACACACAATTTTTTTTTTTTTAAAGTCTTTAGGTGTAGCTCAGGTA  650

seq1  TACCCAGAACCCTTCCTGCCACAAGAAGAGGGCAGCACAAAGTGGAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAACCCTTCCTGCCACAAGAAGAGGGCAGCACAAAGTGGAGATT  700

seq1  CTTAGAGGTTCTAATTCATTACCTCAAAGCTCTAAACCAACAAGAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGTTCTAATTCATTACCTCAAAGCTCTAAACCAACAAGAAAAAA  750

seq1  GGAATAATTTGATTCGCTCTGGAGTCTAGATATGAATAGTAAGAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAATTTGATTCGCTCTGGAGTCTAGATATGAATAGTAAGAAAATAA  800

seq1  TGAATTTATAGGGAATGGTAAAAGAAAATGAATGGTGGAGAT-GGTTCAG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAATTTATAGGGAATGGTAAAAGAAAATGAATGGTGGAGATGGGTTCAG  850

seq1  TGGGTAAGGAAGGCACTTGCCATGCAAGTAAGGGACTAGACTTTGGGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGGAAGGCACTTGCCATGCAAGTAAGGGACTAGACTTTGGGTGC  900

seq1  TCAGCCACCATGTAAATGCTGAGTGGGTGTAGCGACCTGCAGGAGGGAAG  949
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TCAGCCACCATGT-AATGCTGAGTGGGTGTAGCGACCTGCAAGAGGGAAG  949

seq1  AACAGGTAAGCCCTGGAACAAGCTGGCTAGTTAGACTACCCCAAGTAGTG  999
      ||||||| |||||||| ||||||||||||| ||||||||| |||||||||
seq2  AACAGGT-AGCCCTGG-ACAAGCTGGCTAG-TAGACTACCTCAAGTAGTG  996

seq1  GGCTCTGGGTTCAGGTGAGAGCCCCTATCTGACTATATAAGCTGGAGAGC  1049
      ||||||||| |||||||||||||||||||||||  ||| |||| ||||||
seq2  GGCTCTGGG-TCAGGTGAGAGCCCCTATCTGAC--TATTAGCT-GAGAGC  1042

seq1  AATTGAGTAAGACAGACATCACCCTGTGGTTTCATAGG-CTTGT  1092
       |||  |  |||||||  ||| |||||||||||||||| |||||
seq2  CATTTGGATAGACAGAACTCA-CCTGTGGTTTCATAGGCCTTGT  1085