BAC Information

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BAC

Clone NameB6Ng01-204K10
Chromosome4 (Build37)
Map Location 28,433,966 - 28,536,539
singlet/doubletdoublet
Overlap geneLOC100040773
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
Downstream geneEpha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204K10.bB6Ng01-204K10.g
ACCGA024538GA024539
length1,0721,010
definitionB6Ng01-204K10.b B6Ng01-204K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,535,497 - 28,536,539)(28,433,966 - 28,434,968)
sequence
gaattccttaaagcaggcacccacataaaattactaggattataataaaa
taacttaacacatgtgtttttgtatgctgtatatgaagaaattatgtagc
tgtaaatcagactaaaaaagaaagaaacatatctgtgaagatgatttatt
aaaaactattcttttgtgatcatgaactcaaatgctgtgagccttctatc
agggaaggaaatgtggaatataaatggtgaactcattacctgtgaacatg
caacctaagactttcagagtccttgaatgttgcgcgcacccaactggcca
ggaagaacgacgctgcaacaggatccttctgcacacgtttattcagtcct
gtttcttctttctctatatctccctgtttatatctcccttgtttatatct
ccctcgaaccctgggtctctcacccttttatactctcagttcccatccac
gcacagcaggccacgccacctcaccaggcacgcagcttcagctaatcagg
gcagcaggggcatatcttcatcaaaatggattcactgatatcctggtaca
cctgcacagctctcaagatgtttgtggcttatattcaggtgtatgaagaa
gtcaggtgcaagccataagacttagtttgcagtccctggcgcctttggga
ctgctgccacacctgctcctcacactttgaatacactttgtcaatgattt
ccagactgtataaactgactttaacaaaaaagatattgcagaagtttaaa
tttgagtgtgaaaataagctaattcaacaacttatgtcctatcttagata
aattatagtttagattttattacataaatatacatttttcattaaataaa
gaatactatatctctttattttaagtaaaaatttcacattctctttcttt
tttaaactgatgcactttgtatttgctaatgtaattttccctatatctca
tattattggaaagtagatcattttttaaataatattatttcctgaatatg
ggcttccccatcttttctttttttttccaggattatccccaatttaacct
ttccgggatcctaaatcttctt
gaattccctatatagatgaaactagtctgaactcacaatgatccttctgt
gcttgcctctctgcactgggaattaaggcatgtgccaccatgactggcat
ttgaataacttaatctgtgaaaacatattaaaatgtttaactttgatatg
ggtttatgagtttatgttgaaatatgactttttacaatattggagcatcc
gtaccactcagaattaccatatccacatgtttaattaatcaagttatgac
aatgtttaaagtttttaattggaaaatgaagtattttaaaggaatagtat
atattatctccataaatacagtttataatgttctttagttatattggaca
atataaacatttattccaagacctacattaggttattgttaaaatttcta
tactgataaaaataaatcaaggatttgtaacatctgcatccttataacta
taatgaatgtaaaattaatttttaaatcaaccataattacttgcctgagt
tagcctcctagggtactctgaaagagtgccacatgctccgtggtgatgaa
tttaaggtggtataaaatgaaggtgtagaagttccttgtttctgaacttg
gtgaaagaatggatacttgaccacactgacaattcttttttgggaactaa
aagggggcaggggaagaaagggaagggaggatagcccatgcccggccaga
gttccacctatgctttgggcaggcagacgcagaaggactgccggtcgctt
tccactcggccctgggtgggcatctaagccactgactccactcaactggg
ggtggacaaggggcagctcctaaaagcatgaggccccagggttgacaccc
tgtgccccagggttattggagagagggctgaaggagagaggtttccacac
agtcaagagtctgtgcagcaggccttgatgagcagagacttgtcttatgg
ttttaaagcttttattatatgaaaggctaggtagaaagagactaaggtgg
ggggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28535497_28536539
seq2: B6Ng01-204K10.b_44_1114 (reverse)

seq1  AGAAGA-TTAAGAT--CAGAAAG--TAAA-TGGGGATAAT-CTGG-AAAA  42
      |||||| ||| |||  | |||||  |||| |||||||||| |||| ||||
seq2  AGAAGATTTAGGATCCCGGAAAGGTTAAATTGGGGATAATCCTGGAAAAA  50

seq1  AAAAGAAAAGAT-GGGAAG-CCATATTCAGAATATATTAT--TTTAAAAA  88
      |||||||||||| |||||| |||||||||| | ||| |||  ||||||||
seq2  AAAAGAAAAGATGGGGAAGCCCATATTCAGGAAATAATATTATTTAAAAA  100

seq1  ATGATCTACTTT-CAAT-ATATGAGATATAGGAAAAATTACATTAGC-AA  135
      |||||||||||| |||| |||||||||||||| |||||||||||||| ||
seq2  ATGATCTACTTTCCAATAATATGAGATATAGGGAAAATTACATTAGCAAA  150

seq1  TAC-AAGTGCATCAGTTTTAAAAAGAAAGAGAATGTGAAATTTTTACTTA  184
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACAAAGTGCATCAGTTTAAAAAAGAAAGAGAATGTGAAATTTTTACTTA  200

seq1  AAAT-AAGAGATATAGTATTCTTTATTTAATGAAAAATGTATA-TTATGT  232
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATAAAGAGATATAGTATTCTTTATTTAATGAAAAATGTATATTTATGT  250

seq1  -ATAAAATCTAAACTATAA-TTATCT-AGATA-GACAT-AGTTGTTGAAT  277
       |||||||||||||||||| |||||| ||||| ||||| |||||||||||
seq2  AATAAAATCTAAACTATAATTTATCTAAGATAGGACATAAGTTGTTGAAT  300

seq1  TAGCTTA-TTTCACACTCAAATTT-AACTTCTGCAATATCTTTTTTGTTA  325
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  TAGCTTATTTTCACACTCAAATTTAAACTTCTGCAATATCTTTTTTGTTA  350

seq1  AAGTCAGTTTATACAGTCTGG-AATCATTGACAAAGTGTATTC-AAGTGT  373
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  AAGTCAGTTTATACAGTCTGGAAATCATTGACAAAGTGTATTCAAAGTGT  400

seq1  GAGGAGCAGGTGTGGCAGCAGTCCCAAAGGCGCCAGGGACTGC-AACTAA  422
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGGAGCAGGTGTGGCAGCAGTCCCAAAGGCGCCAGGGACTGCAAACTAA  450

seq1  GTCTTATGGCTTGCACCTGACTTCTTCATACACCTGAATATAAGCCACAA  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGGCTTGCACCTGACTTCTTCATACACCTGAATATAAGCCACAA  500

seq1  ACATCTTGAGAGCTGTGCAGGTGTACCAGGATATCAGTGAATCCATTTTG  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGAGAGCTGTGCAGGTGTACCAGGATATCAGTGAATCCATTTTG  550

seq1  ATGAAGATATGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTG  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATATGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTG  600

seq1  AGGTGGCGTGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGGGT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCGTGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGGGT  650

seq1  GAGAGACCCAGGGTTCGAGGGAGATATAAACAAGGGAGATATAAACAGGG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCAGGGTTCGAGGGAGATATAAACAAGGGAGATATAAACAGGG  700

seq1  AGATATAGAGAAAGAAGAAACAGGACTGAATAAACGTGTGCAGAAGGATC  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGAGAAAGAAGAAACAGGACTGAATAAACGTGTGCAGAAGGATC  750

seq1  CTGTTGCAGCGTCGTTCTTCCTGGCCAGTTGGGTGCGCGCAACATTCAAG  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGCGTCGTTCTTCCTGGCCAGTTGGGTGCGCGCAACATTCAAG  800

seq1  GACTCTGAAAGTCTTAGGTTGCATGTTCACAGGTAATGAGTTCACCATTT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAAAGTCTTAGGTTGCATGTTCACAGGTAATGAGTTCACCATTT  850

seq1  ATATTCCACATTTCCTTCCCTGATAGAAGGCTCACAGCATTTGAGTTCAT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCACATTTCCTTCCCTGATAGAAGGCTCACAGCATTTGAGTTCAT  900

seq1  GATCACAAAAGAATAGTTTTTAATAAATCATCTTCACAGATATGTTTCTT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAAAAGAATAGTTTTTAATAAATCATCTTCACAGATATGTTTCTT  950

seq1  TCTTTTTTAGTCTGATTTACAGCTACATAATTTCTTCATATACAGCATAC  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGTCTGATTTACAGCTACATAATTTCTTCATATACAGCATAC  1000

seq1  AAAAACACATGTGTTAAGTTATTTTATTATAATCCTAGTAATTTTATGTG  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACATGTGTTAAGTTATTTTATTATAATCCTAGTAATTTTATGTG  1050

seq1  GGTGCCTGCTTTAAGGAATTC  1043
      |||||||||||||||||||||
seq2  GGTGCCTGCTTTAAGGAATTC  1071

seq1: chr4_28433966_28434968
seq2: B6Ng01-204K10.g_69_1078

seq1  GAATTCCCTATATAGATGAAACTAGTCTGAACTCACAATGATCCTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATATAGATGAAACTAGTCTGAACTCACAATGATCCTTCTGT  50

seq1  GCTTGCCTCTCTGCACTGGGAATTAAGGCATGTGCCACCATGACTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTCTCTGCACTGGGAATTAAGGCATGTGCCACCATGACTGGCAT  100

seq1  TTGAATAACTTAATCTGTGAAAACATATTAAAATGTTTAACTTTGATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAACTTAATCTGTGAAAACATATTAAAATGTTTAACTTTGATATG  150

seq1  GGTTTATGAGTTTATGTTGAAATATGACTTTTTACAATATTGGAGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGAGTTTATGTTGAAATATGACTTTTTACAATATTGGAGCATCC  200

seq1  GTACCACTCAGAATTACCATATCCACATGTTTAATTAATCAAGTTATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTCAGAATTACCATATCCACATGTTTAATTAATCAAGTTATGAC  250

seq1  AATGTTTAAAGTTTTTAATTGGAAAATGAAGTATTTTAAAGGAATAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAAAGTTTTTAATTGGAAAATGAAGTATTTTAAAGGAATAGTAT  300

seq1  ATATTATCTCCATAAATACAGTTTATAATGTTCTTTAGTTATATTGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCTCCATAAATACAGTTTATAATGTTCTTTAGTTATATTGGACA  350

seq1  ATATAAACATTTATTCCAAGACCTACATTAGGTTATTGTTAAAATTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACATTTATTCCAAGACCTACATTAGGTTATTGTTAAAATTTCTA  400

seq1  TACTGATAAAAATAAATCAAGGATTTGTAACATCTGCATCCTTATAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATAAAAATAAATCAAGGATTTGTAACATCTGCATCCTTATAACTA  450

seq1  TAATGAATGTAAAATTAATTTTTAAATCAACCATAATTACTTGCCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATGTAAAATTAATTTTTAAATCAACCATAATTACTTGCCTGAGT  500

seq1  TAGCCTCCTAGGGTACTCTGAAAGAGTGCCACATGCTCCGTGGTGATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCTAGGGTACTCTGAAAGAGTGCCACATGCTCCGTGGTGATGAA  550

seq1  TTTAAGGTGGTATAAAATGAAGGTGTAGAAGTTCCTTGTTTCTGAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTGGTATAAAATGAAGGTGTAGAAGTTCCTTGTTTCTGAACTTG  600

seq1  GTGAAAGAATGGATACTTGACCACACTGACAATTC-TTTTTGGGAACTAA  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGAAAGAATGGATACTTGACCACACTGACAATTCTTTTTTGGGAACTAA  650

seq1  AAGGGGGCAGGGGAAGAAAGGGAAGGGAGGATAGCCCATGCCCGGCCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCAGGGGAAGAAAGGGAAGGGAGGATAGCCCATGCCCGGCCAGA  700

seq1  GTTCCACCTATGCTTTGGGCAGGCAGACGCAGAAGGACTGCCGGTCGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTATGCTTTGGGCAGGCAGACGCAGAAGGACTGCCGGTCGCTT  750

seq1  TCCACTCGGCCCTGGGTGGGCATCTAAGCCACTGACTCCACTCAACTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCGGCCCTGGGTGGGCATCTAAGCCACTGACTCCACTCAACTGGG  800

seq1  GGTGGACAAGGGGCAGCTCCCAAAAGCATGAGGCCCCAGGG-TGACACCC  848
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  GGTGGACAAGGGGCAGCTCCTAAAAGCATGAGGCCCCAGGGTTGACACCC  850

seq1  TGTGCCCCAGGGTTATGGGAGAGAGGGCTGAGGGAGAGAGGTTCCCACAC  898
      |||||||||||||||| |||||||||||||| ||||||||||| ||||||
seq2  TGTGCCCCAGGGTTATTGGAGAGAGGGCTGAAGGAGAGAGGTTTCCACAC  900

seq1  AGGCAAGAGTCTGTGCAGCAGGCCTTGATGAGCAGAGAC-TGTC-TATGG  946
      || |||||||||||||||||||||||||||||||||||| |||| |||||
seq2  AGTCAAGAGTCTGTGCAGCAGGCCTTGATGAGCAGAGACTTGTCTTATGG  950

seq1  TTTTAAAGC-TTTATTATA-GAAAGGC-AGGGAGAAAGAGA-GAAGGTGG  992
      ||||||||| ||||||||| ||||||| ||| |||||||||  ||||| |
seq2  TTTTAAAGCTTTTATTATATGAAAGGCTAGGTAGAAAGAGACTAAGGT-G  999

seq1  GGGGGGGGGAG  1003
      |||||||||||
seq2  GGGGGGGGGAG  1010