BAC Information

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BAC

Clone NameB6Ng01-204O19
Chromosome4 (Build37)
Map Location 76,677,126 - 76,805,554
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204O19.bB6Ng01-204O19.g
ACCGA024738GA024739
length4921,077
definitionB6Ng01-204O19.b B6Ng01-204O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,805,057 - 76,805,554)(76,677,126 - 76,678,202)
sequence
ttgtgttttgaagatccaaaattatttattcaattttctgtgaccatttg
aactatgtcagtagctattaatattagcataaaatatttttaaagataaa
ttttcatttatcatagggtaatgcttatcgtggaattactgaaagtgcag
aaattttctgaattaggaaatataggaaggtgtcaggtagtttctgaaat
tgcagcagtcatttcccaagagtttcagttgtgcctcactcttgtaggta
tttagaattctaatgtgagttttgacattctgaggtggggataggcagag
gaattgagaggagttgggagacaggggtggtgtgtgcaaaattcagtata
cattgtatgttttaaaaagatatctagctgggcatggtagcgcacgcctt
tagtccaagcacttgggaggctgaggcaggcagatttctgagtttgaggc
cagcctggtctataaagtgagttccaggacagcctgtcagag

gaattcattcttatgataaagtcttgggtactttgctattgtagggtatc
ctggaaggaaaattttgatgtagccatccatgaagctttgttatcagaat
tgttacacagagacattttcccccaaagttttactcagtttaagtgtgga
agacaatcaaaccatgggagcagactctagaagttttgattcagtctgat
tgaccatctatgaatgcactacgtgctccttctcacctcttcttggcttg
ttttgctgccagttgtaattactatggggagtggctgcttccatctatac
cctcccgtgctgcctcaacagtgtatgaaaagaatcataatgaaagtaat
tctgaccatcttgtttccaccttctaagagctgtataagatcaacacttg
tgcaggattacctgggcaaagatcagaggctcttctactgaaaagtttta
ctgcaaagatgagttccattaatgggaatcataaattggtaatttcattt
acacagtccatactttatcatcccaatatttctcagaaattgatgatgtt
attatgttttattggcaatccatgtaaagattggtcagttcttacccatt
gccatgtacagggaggtgaaattcagttcatcaacttggctacaagcaaa
cttacacatctgctgagccatttttctagaaagattgattatcccaccta
atatatgacaaacatcaagttccaaataggctatgttattcctcaaagtc
atacagctagtaaatggaagagcagtagacagcagcaggtttcagttggc
agcgtattttcaaccctgcttagagcataattatgccacaagtagaaggc
caggtttccagagtgtctttggaaaagggttagattcagtcaattgaagt
catttcaatggcacattgaaaggtaccatatatgtaaatatagattgggc
tcatcattctgacctacagaattgtagaagtaataccagcactcatattt
ctaacatatttatcaattcacttccatttactaatatctaccttagagta
tttctcaaattacatccacacaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76805057_76805554
seq2: B6Ng01-204O19.b_46_543 (reverse)

seq1  CTCTGACTGGCTGTCCTGGAACTCACTTTATAGACCAGGCTGGCCTCAAA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAGGCTGTCCTGGAACTCACTTTATAGACCAGGCTGGCCTCAAA  50

seq1  CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTTGGACTAAAGGCGTG  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCAGAAATCTGCCTGCCTCAGCCTCCCAAGTGCTTGGACTAAAGGCGTG  100

seq1  CGCTACCATGCCCAGCTAGATATCTTTTTAAAACATACAATGTATACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACCATGCCCAGCTAGATATCTTTTTAAAACATACAATGTATACTGA  150

seq1  ATTTTGCACACACCACCCCTGTCTCCCAACTCCTCTCAATTCCTCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCACACACCACCCCTGTCTCCCAACTCCTCTCAATTCCTCTGCCT  200

seq1  ATCCCCACCTCAGAATGTCAAAACTCACATTAGAATTCTAAATACCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACCTCAGAATGTCAAAACTCACATTAGAATTCTAAATACCTACA  250

seq1  AGAGTGAGGCACAACTGAAACTCTTGGGAAATGACTGCTGCAATTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGCACAACTGAAACTCTTGGGAAATGACTGCTGCAATTTCAGA  300

seq1  AACTACCTGACACCTTCCTATATTTCCTAATTCAGAAAATTTCTGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTGACACCTTCCTATATTTCCTAATTCAGAAAATTTCTGCACTT  350

seq1  TCAGTAATTCCACGATAAGCATTACCCTATGATAAATGAAAATTTATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTCCACGATAAGCATTACCCTATGATAAATGAAAATTTATCTT  400

seq1  TAAAAATATTTTATGCTAATATTAATAGCTACTGACATAGTTCAAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTTTATGCTAATATTAATAGCTACTGACATAGTTCAAATGGT  450

seq1  CACAGAAAATTGAATAAATAATTTTGGATCTTCAAAACACAAGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAATTGAATAAATAATTTTGGATCTTCAAAACACAAGAATTC  498


seq1: chr4_76677126_76678202
seq2: B6Ng01-204O19.g_65_1141

seq1  GAATTCATTCTTATGATAAAGTCTTGGGTACTTTGCTATTGTAGGGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTATGATAAAGTCTTGGGTACTTTGCTATTGTAGGGTATC  50

seq1  CTGGAAGGAAAATTTTGATGTAGCCATCCATGAAGCTTTGTTATCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGAAAATTTTGATGTAGCCATCCATGAAGCTTTGTTATCAGAAT  100

seq1  TGTTACACAGAGACATTTTCCCCCAAAGTTTTACTCAGTTTAAGTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAGAGACATTTTCCCCCAAAGTTTTACTCAGTTTAAGTGTGGA  150

seq1  AGACAATCAAACCATGGGAGCAGACTCTAGAAGTTTTGATTCAGTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCAAACCATGGGAGCAGACTCTAGAAGTTTTGATTCAGTCTGAT  200

seq1  TGACCATCTATGAATGCACTACGTGCTCCTTCTCACCTCTTCTTGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCTATGAATGCACTACGTGCTCCTTCTCACCTCTTCTTGGCTTG  250

seq1  TTTTGCTGCCAGTTGTAATTACTATGGGGAGTGGCTGCTTCCATCTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGCCAGTTGTAATTACTATGGGGAGTGGCTGCTTCCATCTATAC  300

seq1  CCTCCCGTGCTGCCTCAACAGTGTATGAAAAGAATCATAATGAAAGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGTGCTGCCTCAACAGTGTATGAAAAGAATCATAATGAAAGTAAT  350

seq1  TCTGACCATCTTGTTTCCACCTTCTAAGAGCTGTATAAGATCAACACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCATCTTGTTTCCACCTTCTAAGAGCTGTATAAGATCAACACTTG  400

seq1  TGCAGGATTACCTGGGCAAAGATCAGAGGCTCTTCTACTGAAAAGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATTACCTGGGCAAAGATCAGAGGCTCTTCTACTGAAAAGTTTTA  450

seq1  CTGCAAAGATGAGTTCCATTAATGGGAATCATAAATTGGTAATTTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGATGAGTTCCATTAATGGGAATCATAAATTGGTAATTTCATTT  500

seq1  ACACAGTCCATACTTTATCATCCCAATATTTCTCAGAAATTGATGATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCCATACTTTATCATCCCAATATTTCTCAGAAATTGATGATGTT  550

seq1  ATTATGTTTTATTGGCAATCCATGTAAAGATTGGTCAGTTCTTACCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTTATTGGCAATCCATGTAAAGATTGGTCAGTTCTTACCCATT  600

seq1  GCCATGTACAGGGAGGTGAAATTCAGTTCATCAACTTGGCTACAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTACAGGGAGGTGAAATTCAGTTCATCAACTTGGCTACAAGCAAA  650

seq1  CTTACACATCTGCTGAGCCATTTTTCTAGAAAGATTGATTATCCCACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACATCTGCTGAGCCATTTTTCTAGAAAGATTGATTATCCCACCTA  700

seq1  ATATATGACAAACATCAAGTTCCAAATAGGCTATGTTATTCCTCAAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGACAAACATCAAGTTCCAAATAGGCTATGTTATTCCTCAAAGTC  750

seq1  ATACAGCTAGTAAATGGAAGAGCAGTAGACAGCAGCAGGTTTCAGTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTAGTAAATGGAAGAGCAGTAGACAGCAGCAGGTTTCAGTTGGC  800

seq1  AGCGTATTTTCAACCCTGCTTAGAGCATAATTATGCCACAAGTAGAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTATTTTCAACCCTGCTTAGAGCATAATTATGCCACAAGTAGAAGGC  850

seq1  CAGG-TTCCAGAGTGTCTTTGGAAAAGGGTTAGA-TCAGTCAATTGAAGT  898
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGGTTTCCAGAGTGTCTTTGGAAAAGGGTTAGATTCAGTCAATTGAAGT  900

seq1  CATTTCAATGGCACATTG-AAGGTACCATTATATGTAAATATTAGATTGG  947
      |||||||||||||||||| ||||||||| |||||||||||| ||||||||
seq2  CATTTCAATGGCACATTGAAAGGTACCA-TATATGTAAATA-TAGATTGG  948

seq1  GCTCATCATTCTGACCTTACAGAA-TGTAGAAGTAATACCAGCACTCATA  996
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  GCTCATCATTCTGACC-TACAGAATTGTAGAAGTAATACCAGCACTCATA  997

seq1  TTTCTAACATA-TTATCAAATTCAACTTCATTTACTAATATCTACCTTAG  1045
      ||||||||||| ||||| ||||||  | ||||||||||||||||||||||
seq2  TTTCTAACATATTTATC-AATTCACTTCCATTTACTAATATCTACCTTAG  1046

seq1  AGTATTTCTCAAATTTACATCCACACAAGAAA  1077
      ||||||||||||| ||||||||||||||||||
seq2  AGTATTTCTCAAA-TTACATCCACACAAGAAA  1077


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