BAC Information

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BAC

Clone NameB6Ng01-205C06
Chromosome4 (Build37)
Map Location 27,660,110 - 27,754,833
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205C06.bB6Ng01-205C06.g
ACCGA024900GA024901
length1,1151,193
definitionB6Ng01-205C06.b B6Ng01-205C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,660,110 - 27,661,222)(27,753,627 - 27,754,833)
sequence
gaattcttgaactagaaagagaaccatgaaaaggactcactgtaatagca
tgagagtagtagtcatcaccacaaatatccacatgaaatttatcatagat
tagaatactagagactcatttaataggtaatttcatttgtgtctagagaa
agaaggcagagaggataagaaatagacttaaatacgttataggatgaatt
gtatttctctactgtccatgtttgtggtttcactagtattgaagaatatg
attatattgcatatcatgagtaaatttctaatttgatatgactgacaccc
ttaaaagaaaacaaacttttgacaaagcaagttgcagagagaaaacaaag
tgaagaaaagatgaggggaaagaaagatgcataaaataatgctaatctta
catcttgatgttggatttctagactctggaactgtaagaaaacaaattgt
tggttaaacaacacagtccttactatgccaattataacagagtaaaatca
gataatttctctcttcccttctccatattttaaattaagaaatttaaatt
tactcctttgatatgatgaagatgaatgttgggagtaaacgtgatataaa
gaacagaaaacaaatgttatgtttgactgattatgagatgtctttgtgca
ttcaaattggaaagtcatgcagacaacccagcccattgacttgatactca
gagaagtctatatcatggacagaaatctagtagttgtgaagtaacctgta
aatatcaaaatcttcttcaagaattgaaaccattcacaactgtctagtga
gcgtaaatggctagacatgtcttcctgtcaagtagtaaatcttcaaaagc
catgtcatgaatgtataaaacagagaaaggggaaactgcttagtacagaa
aggaacgattacaggtaggagacaagggttgtggtgaatgaatagttatt
taactaacgggccttcctcctgcctcagcctatagcatgtagggcagata
atgccattataccccgtttatagtttccttttatatgaaacgtctatgat
atccactgaaggagaacagaagatatttagattatatcatcttcagtggc
agcctcagcactgac

gaattcccatctatgaatctgaattatgtgtaacttcattatgttgtggt
gatttgagtatgtgttttttgataggtgattttttatttgtaagaatttt
atagtaaatattattttatacagtataaatttcaatatatagaaagaaat
attattttaattgtctttatatcataaggtgtcataattcaaaactatct
tcatactcttcatcctgttcataaaatcaccaatgaattaaaaaatgaag
ctgccatgactacatattacctttgaatattaaagagcttggatgactaa
ttaatttgaattaaatctataaatgatcactttaaaatactattaaaaga
gtaagtgctctcatgttaagaagaaaaaaaaaacacaaaataaattgtgc
acattgtgaaggaaaactattgttgttatatatcaggtatatctttttag
cttctaaaaaaattgcttgtttgtaagtgcatctcagagctttctattct
gggttgatattgctagtatctatttaggattgagaattctgaaaatgtga
acacaatccagaagcatcagaaggaaaatattgaactgtggcaagctaaa
gggattgatacagtgcaacctacagaaaaaatttgagttgcttttgcttc
attttaaatagaaagttaatattaaatcaaatattcagtatatatgtaat
gcaagacaaagcagcaatttaataagaaattaggccaaaagtaagaaagt
gaataattaaaatcttctttaattatctctagatgtaattaagctgtgca
gagtgtaaatcattgcttataatttgacatccttctgacttaaatgcaaa
tatatgagatccagctagaagcaataagtacaatgcatgcagggttatta
aattttcatggcaggagtatacaatgaagataatggcaaaatcagacagg
attgccctacaaacataaagattttgttgctagattttttttttctaagg
caaggaaaatagatcctctgcccaccgggttatcttaactgctcaattca
cttttcctctcatcttaatcatatttcttgggtgggatatttgtcaccat
tggcaatagattccttatcaaacacataactataggcgaaattccttcaa
tacatagtactgatctagagtttatatcctggaccctttaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27660110_27661222
seq2: B6Ng01-205C06.b_43_1157

seq1  GAATTCTTGAACTAGAAAGAGAACCATGAAAAGGACTCACTGTAATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAACTAGAAAGAGAACCATGAAAAGGACTCACTGTAATAGCA  50

seq1  TGAGAGTAGTAGTCATCACCACAAATATCCACATGAAATTTATCATAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTAGTAGTCATCACCACAAATATCCACATGAAATTTATCATAGAT  100

seq1  TAGAATACTAGAGACTCATTTAATAGGTAATTTCATTTGTGTCTAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACTAGAGACTCATTTAATAGGTAATTTCATTTGTGTCTAGAGAA  150

seq1  AGAAGGCAGAGAGGATAAGAAATAGACTTAAATACGTTATAGGATGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGAGAGGATAAGAAATAGACTTAAATACGTTATAGGATGAATT  200

seq1  GTATTTCTCTACTGTCCATGTTTGTGGTTTCACTAGTATTGAAGAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTCTACTGTCCATGTTTGTGGTTTCACTAGTATTGAAGAATATG  250

seq1  ATTATATTGCATATCATGAGTAAATTTCTAATTTGATATGACTGACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTGCATATCATGAGTAAATTTCTAATTTGATATGACTGACACCC  300

seq1  TTAAAAGAAAACAAACTTTTGACAAAGCAAGTTGCAGAGAGAAAACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAAACAAACTTTTGACAAAGCAAGTTGCAGAGAGAAAACAAAG  350

seq1  TGAAGAAAAGATGAGGGGAAAGAAAGATGCATAAAATAATGCTAATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAGATGAGGGGAAAGAAAGATGCATAAAATAATGCTAATCTTA  400

seq1  CATCTTGATGTTGGATTTCTAGACTCTGGAACTGTAAGAAAACAAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGATGTTGGATTTCTAGACTCTGGAACTGTAAGAAAACAAATTGT  450

seq1  TGGTTAAACAACACAGTCCTTACTATGCCAATTATAACAGAGTAAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAACAACACAGTCCTTACTATGCCAATTATAACAGAGTAAAATCA  500

seq1  GATAATTTCTCTCTTCCCTTCTCCATATTTTAAATTAAGAAATTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTCTCTCTTCCCTTCTCCATATTTTAAATTAAGAAATTTAAATT  550

seq1  TACTCCTTTGATATGATGAAGATGAATGTTGGGAGTAAACGTGATATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTTGATATGATGAAGATGAATGTTGGGAGTAAACGTGATATAAA  600

seq1  GAACAGAAAACAAATGTTATGTTTGACTGATTATGAGATGTCTTTGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAAACAAATGTTATGTTTGACTGATTATGAGATGTCTTTGTGCA  650

seq1  TTCAAATTGGAAAGTCATGCAGACAACCCAGCCCATTGACTTGATACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGGAAAGTCATGCAGACAACCCAGCCCATTGACTTGATACTCA  700

seq1  GAGAAGTCTATATCATGGACAGAAATCTAGTAGTTGTGAAGTAACCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCTATATCATGGACAGAAATCTAGTAGTTGTGAAGTAACCTGTA  750

seq1  AATATCAAAATCTTCTTCAAGAATTGAAACCATTCACAACTGTCTAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAAATCTTCTTCAAGAATTGAAACCATTCACAACTGTCTAGTGA  800

seq1  GCGTAAATGGCTAGACATGTCTTCCTGTCAAGTAGTAAATCTTCAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAAATGGCTAGACATGTCTTCCTGTCAAGTAGTAAATCTTCAAAAGC  850

seq1  CATGTCATGAATGTATAAAACAGAGAAAGGGGAAACTGCTTAGTACAG-A  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGTCATGAATGTATAAAACAGAGAAAGGGGAAACTGCTTAGTACAGAA  900

seq1  AGGAACGATTACAGGTAGGAGACAAGGGTTGTGGTGAATGAATAGTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGATTACAGGTAGGAGACAAGGGTTGTGGTGAATGAATAGTTATT  950

seq1  TAACTAAC-GGCCTTCCTCCTGCCTCAGCCTATAGCATGTAGGGCAGATA  998
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  TAACTAACGGGCCTTCCTCCTGCCTCAGCCTATAGCATGTAGGGCAGAT-  999

seq1  AATGCCATTATACCCCGTTTATAGTTTCCTTTTATATGAAACGTCTATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATTATACCCCGTTTATAGTTTCCTTTTATATGAAACGTCTATGA  1049

seq1  TATCCACTGAAGGAGAACAGAAGATATTTAGA-TATATCATC-TCAGTGG  1096
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TATCCACTGAAGGAGAACAGAAGATATTTAGATTATATCATCTTCAGTGG  1099

seq1  CAGCCTCAGGCACTGAC  1113
      |||||||| ||||||||
seq2  CAGCCTCA-GCACTGAC  1115


seq1: chr4_27753627_27754833
seq2: B6Ng01-205C06.g_67_1259 (reverse)

seq1  AATTAAAGGGTCAAAGAATAAAAAAAATATTAGATTTACCAGTAACTTAT  50
      |||||||||||| | |    | | |||   |||||    |||||   |||
seq2  AATTAAAGGGTCCAGG----ATATAAACTCTAGAT----CAGTA--CTAT  40

seq1  GTATTGAAGGAATTTTGTGGCTATTAGTATGTGTGTTTGATAAGGGATCT  100
      |||||||||||||||   | ||| |||| | |||||||||||||| ||||
seq2  GTATTGAAGGAATTT--CGCCTA-TAGT-TATGTGTTTGATAAGGAATCT  86

seq1  ATTG-CTATGGTGACAAA-ATACGCACCAAGAAATATGATTAAAGATGAA  148
      |||| | ||||||||||| || |   ||||||||||||||| |||||| |
seq2  ATTGCCAATGGTGACAAATATCCCACCCAAGAAATATGATT-AAGATG-A  134

seq1  GAGGAAAAGTGAATTTGAGCAAGTTAGATAA-CCGGTGGGCAGAGGATCT  197
      ||||||||||||| |||||||  | |||||| ||||||||||||||||||
seq2  GAGGAAAAGTGAA-TTGAGCAGTTAAGATAACCCGGTGGGCAGAGGATCT  183

seq1  ATTTTCCTTGCCTTAGGAAAAAAAAAATCTAGCAACAAAATCTTTATGTT  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTGCCTTA-GAAAAAAAAAATCTAGCAACAAAATCTTTATGTT  232

seq1  TGTAGGGCAATCCTGTCTGATTTTGCCATTATCTTCATTGTATACTCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCAATCCTGTCTGATTTTGCCATTATCTTCATTGTATACTCCTG  282

seq1  CCATGAAAATTTAAT-ACCCTGCATGCATTGTACTTATTGCTTCTAGCTG  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCATGAAAATTTAATAACCCTGCATGCATTGTACTTATTGCTTCTAGCTG  332

seq1  GATCTCATATATTTGCATTTAAGTCAGAAGGATGTCAAATTATAAGCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATATATTTGCATTTAAGTCAGAAGGATGTCAAATTATAAGCAAT  382

seq1  GATTTACACTCTGCACAGCTTAATTACATCTAGAGATAATTAAAGAAGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACACTCTGCACAGCTTAATTACATCTAGAGATAATTAAAGAAGAT  432

seq1  TTTAATTATTCACTTTCTTACTTTTGGCCTAATTTCTTATTAAATTGCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATTCACTTTCTTACTTTTGGCCTAATTTCTTATTAAATTGCTG  482

seq1  CTTTGTCTTGCATTACATATATACTGAATATTTGATTTAATATTAACTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTGCATTACATATATACTGAATATTTGATTTAATATTAACTTT  532

seq1  CTATTTAAAATGAAGCAAAAGCAACTCAAATTTTTTCTGTAGGTTGCACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAAAATGAAGCAAAAGCAACTCAAATTTTTTCTGTAGGTTGCACT  582

seq1  GTATCAATCCCTTTAGCTTGCCACAGTTCAATATTTTCCTTCTGATGCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAATCCCTTTAGCTTGCCACAGTTCAATATTTTCCTTCTGATGCTT  632

seq1  CTGGATTGTGTTCACATTTTCAGAATTCTCAATCCTAAATAGATACTAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTGTGTTCACATTTTCAGAATTCTCAATCCTAAATAGATACTAGC  682

seq1  AATATCAACCCAGAATAGAAAGCTCTGAGATGCACTTACAAACAAGCAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACCCAGAATAGAAAGCTCTGAGATGCACTTACAAACAAGCAAT  732

seq1  TTTTTTAGAAGCTAAAAAGATATACCTGATATATAACAACAATAGTTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGAAGCTAAAAAGATATACCTGATATATAACAACAATAGTTTTC  782

seq1  CTTCACAATGTGCACAATTTATTTTGTGTTTTTTTTTTCTTCTTAACATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAATGTGCACAATTTATTTTGTGTTTTTTTTTTCTTCTTAACATG  832

seq1  AGAGCACTTACTCTTTTAATAGTATTTTAAAGTGATCATTTATAGATTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTACTCTTTTAATAGTATTTTAAAGTGATCATTTATAGATTTA  882

seq1  ATTCAAATTAATTAGTCATCCAAGCTCTTTAATATTCAAAGGTAATATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTAATTAGTCATCCAAGCTCTTTAATATTCAAAGGTAATATGT  932

seq1  AGTCATGGCAGCTTCATTTTTTAATTCATTGGTGATTTTATGAACAGGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGCAGCTTCATTTTTTAATTCATTGGTGATTTTATGAACAGGAT  982

seq1  GAAGAGTATGAAGATAGTTTTGAATTATGACACCTTATGATATAAAGACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTATGAAGATAGTTTTGAATTATGACACCTTATGATATAAAGACA  1032

seq1  ATTAAAATAATATTTCTTTCTATATATTGAAATTTATACTGTATAAAATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAATATTTCTTTCTATATATTGAAATTTATACTGTATAAAATA  1082

seq1  ATATTTACTATAAAATTCTTACAAATAAAAAATCACCTATCAAAAAACAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTATAAAATTCTTACAAATAAAAAATCACCTATCAAAAAACAC  1132

seq1  ATACTCAAATCACCACAACATAATGAAGTTACACATAATTCAGATTCATA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAATCACCACAACATAATGAAGTTACACATAATTCAGATTCATA  1182

seq1  GATGGGAATTC  1207
      |||||||||||
seq2  GATGGGAATTC  1193


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