BAC Information

Click to search

BAC

Clone NameB6Ng01-205E14
Chromosome4 (Build37)
Map Location 59,070,711 - 59,128,568
singlet/doubletdoublet
Overlap geneAI481877
Upstream geneSvep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10
Downstream geneLOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205E14.bB6Ng01-205E14.g
ACCGA025010GA025011
length1,1451,103
definitionB6Ng01-205E14.b B6Ng01-205E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,127,418 - 59,128,568)(59,070,711 - 59,071,797)
sequence
gaattccacaagttgttccttcacacacacacacacacacagagagagag
agagagagagagagagagagagagagagagagagagagagagaaagagat
attaaataaagaaagatgggacaaaaattttataaaaagaatatttaccc
tgataactgaaaatgggtaggttatagccctctcctgtgggtaatatttt
cagatcttttttgttgtgttttgttttgttttgttttgtttttgaggaca
gggtttctctccatagccctgattgtcctggaactcactctgtagaccag
gctagcctcaaactcagggaaccacctgctactgcctcctgagtgcttgg
attaaaggcctgtgccaccaccacccaggctatatcttcaggtcttcaga
tttcagtataccacattatataagacacaagggtaagccacaaaaaaatg
aagtgttaatagcactaggcaaagaccatttctattaaaatatttattta
atttaataagacattattaatacactttatgtaaaaacatctgacatctg
aatttgttgagacattttggttatttttgcaggagtagggattgagccca
cagccttgagcatgctggtcaagtcctttaccagtgagccttctcagcat
cccacagacattatttagagagtacctactggccttgaagtctaaatcta
cctgcctcctcgttcttagtgcttggattgaaagtatgcatcacaacatc
ccactctttccacattttaaatggcaaaaacactaagaactacttgataa
acttaataacttctaagctatagattctctggttttaatgtgagaaccat
cttggcctaattcattggtctaattacttattttttttattgagtagctc
tgttgatttttcccagtagtctgttgaccttgttgctgtatcatacataa
tcattttactccaattgagttagctattagaaaacctctaattccaggcc
cttgattttctagttaaaagaatggatataatttccaaaatccactattt
tcttaaaaaagatcgggttaagaaatttcatgccaaaacctatgttatcc
tgtaagattaattttattttatgcattatagggtgtttaacctgc
gaattcacagacatctgcctgcttctgcctgggattaagtgttctcaact
gtgccacagagccagagtctccagtgtcacttctcaggtaccaactctat
tgctttgtaattacaggctctgtaattgtcctggaactaggttggtggcc
agtgagcaacagggactcacctgcttttgcctttctaacattgggattaa
aatgcagaccaccatgcctgactttcctcttcaacataggttctgggatt
taaacctaggtccttggaccaagcactttgctgactcagctgtcttgtca
gccccgcaggaaaggctttcgtaagagcagaacaatcagatcttggcttt
agggacattaactgagtatatgacacacgcttaaaggaacactgaggtta
tgtggagacagaaaaacatctggtagtataacaacatgaaatagaatcta
agctaaggtactggtgctataaatataggacaattggataggaggcaatg
ctaaaaattgctaaaggacagacaagaagaaatgtaggtttgaaggggac
agagaatatgcagtcagttcatatctgaatatgctaactttgagaatttt
atggaatatgaaggtcgaaatatttaataaagatttagagatttgaactg
gagagatggctcagtggttaagagcactgactgttcttctagaggtcctg
agttcaattcccagcaaccacatggtggctcacaatcatctgttaatgag
atatgatgccctcttctggtgtgtctgaagacagctacagtagctacagt
gtactcatataaataaaataataaaaacctttaaaaaaaaggaattagag
atttagtttggcatgatggcacatggctttaatcccagcttcttggggag
gcagaggtaggcagatctagcctggttctacagagtaagttccaggacag
ccagaaactacaacagtgaaaccctggctttgaaaaaaagaaatagagga
tttatgccagggaatttctccagaaaggacttacagataccaacatatat
acctgaatgaaagctgttagtagaatagatgtatatgaataaacggaaga
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59127418_59128568
seq2: B6Ng01-205E14.b_48_1192 (reverse)

seq1  GCAGGTAAAACA-CCTAT-ATGCATAAAATAAAAATAAATCTTTAAAAAG  48
      |||||| ||||| ||||| ||||||||||| ||||| ||||||   | ||
seq2  GCAGGTTAAACACCCTATAATGCATAAAAT-AAAATTAATCTT---ACAG  46

seq1  TGATAACATAGTGTTTTGGCATTAAAATTTCTTTAACCCTATCTTTTTTT  98
       |||||||||| ||||||||| | ||||||| ||||||| ||||||||| 
seq2  -GATAACATAG-GTTTTGGCA-TGAAATTTC-TTAACCCGATCTTTTTT-  91

seq1  AAAAGAAATAGTTGGATTTTGGAAATTATATCCATTCTTTTACTTAGAAA  148
       ||  |||||| ||||||||||||||||||||||||||||||  ||||||
seq2  -AAGAAAATAG-TGGATTTTGGAAATTATATCCATTCTTTTAACTAGAAA  139

seq1  ATCAAGGGCCTGGAATTAGA-GTTTTCTAATAGCTAACTCAATTGGAGTA  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCAAGGGCCTGGAATTAGAGGTTTTCTAATAGCTAACTCAATTGGAGTA  189

seq1  AAATGATTATTGTATGATACAGCAACAAGGTCAACAGACTACT-GGAAAA  246
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  AAATGATTA-TGTATGATACAGCAACAAGGTCAACAGACTACTGGGAAAA  238

seq1  ATCAACAGAGCTACTCAAT-AAAAAAATAAGTAATTAGAACAATGAATTA  295
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ATCAACAGAGCTACTCAATAAAAAAAATAAGTAATTAGACCAATGAATTA  288

seq1  GGCCAAGATGGTTCTCACATTGAAACCAGAG-ATCTATAGCTTAGAAGTT  344
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  GGCCAAGATGGTTCTCACATTAAAACCAGAGAATCTATAGCTTAGAAGTT  338

seq1  ATTAAGTTTATCAAGTAGTTCTTAGTGTTTTTGCCATTTAAAATGTGGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTATCAAGTAGTTCTTAGTGTTTTTGCCATTTAAAATGTGGAA  388

seq1  AGAGTGGGATGTTGTGATGCATACTTTCAATCCAAGCACTAAGAACGAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGATGTTGTGATGCATACTTTCAATCCAAGCACTAAGAACGAGG  438

seq1  AGGCAGGTAGATTTAGACTTCAAGGCCAGTAGGTACTCTCTAAATAATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTAGATTTAGACTTCAAGGCCAGTAGGTACTCTCTAAATAATGT  488

seq1  CTGTGGGATGCTGAGAAGGCTCACTGGTAAAGGACTTGACCAGCATGCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGATGCTGAGAAGGCTCACTGGTAAAGGACTTGACCAGCATGCTC  538

seq1  AAGGCTGTGGGCTCAATCCCTACTCCTGCAAAAATAACCAAAATGTCTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTGGGCTCAATCCCTACTCCTGCAAAAATAACCAAAATGTCTCA  588

seq1  ACAAATTCAGATGTCAGATGTTTTTACATAAAGTGTATTAATAATGTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAGATGTCAGATGTTTTTACATAAAGTGTATTAATAATGTCTT  638

seq1  ATTAAATTAAATAAATATTTTAATAGAAATGGTCTTTGCCTAGTGCTATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTAAATAAATATTTTAATAGAAATGGTCTTTGCCTAGTGCTATT  688

seq1  AACACTTCATTTTTTTGTGGCTTACCCTTGTGTCTTATATAATGTGGTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCATTTTTTTGTGGCTTACCCTTGTGTCTTATATAATGTGGTAT  738

seq1  ACTGAAATCTGAAGACCTGAAGATATAGCCTGGGTGGTGGTGGCACAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCTGAAGACCTGAAGATATAGCCTGGGTGGTGGTGGCACAGGC  788

seq1  CTTTAATCCAAGCACTCAGGAGGCAGTAGCAGGTGGTTCCCTGAGTTTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCAAGCACTCAGGAGGCAGTAGCAGGTGGTTCCCTGAGTTTGA  838

seq1  GGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAATCAGGGCTATGGAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAATCAGGGCTATGGAGA  888

seq1  GAAACCCTGTCCTCAAAAACAAAACAAAACAAAACAAAACACAACAAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCCTCAAAAACAAAACAAAACAAAACAAAACACAACAAAAA  938

seq1  AGATCTGAAAATATTACCCACAGGAGAGGGCTATAACCTACCCATTTTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAAAATATTACCCACAGGAGAGGGCTATAACCTACCCATTTTCA  988

seq1  GTTATCAGGGTAAATATTCTTTTTATAAAATTTTTGTCCCATCTTTCTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGGGTAAATATTCTTTTTATAAAATTTTTGTCCCATCTTTCTTT  1038

seq1  ATTTAATATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1088

seq1  TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGAAGGAACAACTTGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGAAGGAACAACTTGT  1138

seq1  GGAATTC  1151
      |||||||
seq2  GGAATTC  1145

seq1: chr4_59070711_59071797
seq2: B6Ng01-205E14.g_69_1171

seq1  GAATTCACAGACATCTGCCTGCTTCTGCCTGGGATTAAGTGTTCTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACATCTGCCTGCTTCTGCCTGGGATTAAGTGTTCTCAACT  50

seq1  GTGCCACAGAGCCAGAGTCTCCAGTGTCACTTCTCAGGTACCAACTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACAGAGCCAGAGTCTCCAGTGTCACTTCTCAGGTACCAACTCTAT  100

seq1  TGCTTTGTAATTACAGGCTCTGTAATTGTCCTGGAACTAGGTTGGTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTAATTACAGGCTCTGTAATTGTCCTGGAACTAGGTTGGTGGCC  150

seq1  AGTGAGCAACAGGGACTCACCTGCTTTTGCCTTTCTAACATTGGGATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAACAGGGACTCACCTGCTTTTGCCTTTCTAACATTGGGATTAA  200

seq1  AATGCAGACCACCATGCCTGACTTTCCTCTTCAACATAGGTTCTGGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACCACCATGCCTGACTTTCCTCTTCAACATAGGTTCTGGGATT  250

seq1  TAAACCTAGGTCCTTGGACCAAGCACTTTGCTGACTCAGCTGTCTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTAGGTCCTTGGACCAAGCACTTTGCTGACTCAGCTGTCTTGTCA  300

seq1  GCCCCGCAGGAAAGGCTTTCGTAAGAGCAGAACAATCAGATCTTGGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCAGGAAAGGCTTTCGTAAGAGCAGAACAATCAGATCTTGGCTTT  350

seq1  AGGGACATTAACTGAGTATATGACACACGCTTAAAGGAACACTGAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATTAACTGAGTATATGACACACGCTTAAAGGAACACTGAGGTTA  400

seq1  TGTGGAGACAGAAAAACATCTGGTAGTATAACAACATGAAATAGAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACAGAAAAACATCTGGTAGTATAACAACATGAAATAGAATCTA  450

seq1  AGCTAAGGTACTGGTGCTATAAATATAGGACAATTGGATAGGAGGCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGTACTGGTGCTATAAATATAGGACAATTGGATAGGAGGCAATG  500

seq1  CTAAAAATTGCTAAAGGACAGACAAGAAGAAATGTAGGTTTGAAGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTGCTAAAGGACAGACAAGAAGAAATGTAGGTTTGAAGGGGAC  550

seq1  AGAGAATATGCAGTCAGTTCATATCTGAATATGCTAACTTTGAGAA-TTT  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAGAATATGCAGTCAGTTCATATCTGAATATGCTAACTTTGAGAATTTT  600

seq1  ATGGAATATGAAGGTCGAAATATTTAATAAAGATTTAGAGATTTGAACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATGAAGGTCGAAATATTTAATAAAGATTTAGAGATTTGAACTG  650

seq1  GAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTCTAGAGGTCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTCTAGAGGTCCTG  700

seq1  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAATCATCTG-TAATGAG  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAATCATCTGTTAATGAG  750

seq1  ATATGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTAGCTACAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTAGCTACAGT  800

seq1  GTACTCATATAAATAAAATAAATAAAAACCTTAAAAAAAAAGGAATTAGA  848
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GTACTCATATAAATAAAAT-AATAAAAACCTTTAAAAAAAAGGAATTAGA  849

seq1  GATTTAGTTTGGCATGATGGCACATGGCTTTAATCCCAGC-TCTT-GGGA  896
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  GATTTAGTTTGGCATGATGGCACATGGCTTTAATCCCAGCTTCTTGGGGA  899

seq1  GGCAGAGGTAGGCAGATCTAGCCTGG-TCTACAGAGTAAGTTCCAGGACA  945
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCAGAGGTAGGCAGATCTAGCCTGGTTCTACAGAGTAAGTTCCAGGACA  949

seq1  GCCAG-AACTAC-ACAGTGAAACCCTGCCTT--GAAAAAAGAAATAGA-G  990
      ||||| |||||| |||||||||||||| |||   |||||||||||||| |
seq2  GCCAGAAACTACAACAGTGAAACCCTGGCTTTGAAAAAAAGAAATAGAGG  999

seq1  ATTTATGCCAGG--AATTCCCCAGAAA-GAC-TACAGATACCAACATATA  1036
      ||||||||||||  | ||| ||||||| ||| ||||||||||||||||||
seq2  ATTTATGCCAGGGAATTTCTCCAGAAAGGACTTACAGATACCAACATATA  1049

seq1  ---CTG-ATGAAAGCTG-TAGTAGATAAGATGTATAATGAATAAAACAGA  1081
         ||| |||||||||| |||||||  |||||||| |||||| |||| ||
seq2  TACCTGAATGAAAGCTGTTAGTAGAATAGATGTAT-ATGAAT-AAACGGA  1097

seq1  AGAGAA  1087
      ||||||
seq2  AGAGAA  1103