BAC Information

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BAC

Clone NameB6Ng01-205E20
Chromosome4 (Build37)
Map Location 59,070,711 - 59,128,568
singlet/doubletdoublet
Overlap geneAI481877
Upstream geneSvep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10
Downstream geneLOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205E20.bB6Ng01-205E20.g
ACCGA025022GA025023
length1,0931,122
definitionB6Ng01-205E20.b B6Ng01-205E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,127,480 - 59,128,568)(59,070,711 - 59,071,831)
sequence
gaattccacaagttgttccttcacacacacacacacacacagagagagag
agagagagagagagagagagagagagagagagagagagagagaaagagat
attaaataaagaaagatgggacaaaaattttataaaaagaatatttaccc
tgataactgaaaatgggtaggttatagccctctcctgtgggtaatatttt
cagatcttttttgttgtgttttgttttgttttgttttgtttttgaggaca
gggtttctctccatagccctgattgtcctggaactcactctgtagaccag
gctagcctcaaactcagggaaccacctgctactgcctcctgagtgcttgg
attaaaggcctgtgccaccaccacccaggctatatcttcaggtcttcaga
tttcagtataccacattatataagacacaagggtaagccacaaaaaaatg
aagtgttaatagcactaggcaaagaccatttctattaaaatatttattta
atttaataagacattattaatacactttatgtaaaaacatctgacatctg
aatttgttgagacattttggttatttttgcaggagtagggattgagccca
cagccttgagcatgctggtcaagtcctttaccagtgagccttctcagcat
cccacagacattatttagagagtacctactggccttgaagtctaaatcta
cctgcctcctcgttcttagtgcttggattgaaagtatgcatcacaacatc
ccactctttccacattttaaatggcaaaaacactaagaactacttgataa
aacttaataacttctaagctatagatctctggtttcaatgtgagaaccat
cttggccctaattcattgttctattacttatttttttattgagtagctct
gttgattttccagtagtctgttgaccttgttgctgtatcatacaataatc
attttactccaattgagttagcttattagaaaacttctaattccaggcct
tgaatttttctaagtaaagaatggatataattttccaaaatccaacctat
tttcttttaaaaaaagaatgggttaaagaacttttatgccaaa
gaattcacagacatctgcctgcttctgcctgggattaagtgttctcaact
gtgccacagagccagagtctccagtgtcacttctcaggtaccaactctat
tgctttgtaattacaggctctgtaattgtcctggaactaggttggtggcc
agtgagcaacagggactcacctgcttttgcctttctaacattgggattaa
aatgcagaccaccatgcctgactttcctcttcaacataggttctgggatt
taaacctaggtccttggaccaagcactttgctgactcagctgtcttgtca
gccccgcaggaaaggctttcgtaagagcagaacaatcagatcttggcttt
agggacattaactgagtatatgacacacgcttaaaggaacactgaggtta
tgtggagacagaaaaacatctggtagtataacaacatgaaatagaatcta
agctaaggtactggtgctataaatataggacaattggataggaggcaatg
ctaaaaattgctaaaggacagacaagaagaaatgtaggtttgaaggggac
agagaatatgcagtcagttcatatctgaatatgctaactttgagaattta
tggaatatgaaggtcgaaatatttaataaagatttagagatttgaactgg
agagatggctcagtggttaagagcactgactgtttcttctagaggtcctg
agttcattcccagcaaccacatggtggctcacaattcatctgtaatgaga
tatgatgccctcttctggtgtgtctgaagacagctacagtagctacagtg
tactcatataaataaaataaataaaaacctttaaaaaaaaaggaattaga
gatttagtttggcatgatggcacatggctttaatcccagctcttgggagg
cagaggtaggcagatctagcctggtctacagagtaattccaggacagcca
gaactacacagtgaaaccctgcccttgaaaaagaaatgagatttatgcca
ggatttccccagaaagactacaggataccaacatatactgatgaagtctg
tagtaaataagaatgtataatgcataaaacgaagagaaaggtactcccaa
cgaatactttaagatctgatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59127480_59128568
seq2: B6Ng01-205E20.b_40_1132 (reverse)

seq1  TTTGGCATTAAAATTTCTTTAACCCTATCTTTTTTTAAAAG-AAATA-GT  48
      ||||||| ||||| |||||||||||  |||||||||||||| ||||| ||
seq2  TTTGGCA-TAAAAGTTCTTTAACCCATTCTTTTTTTAAAAGAAAATAGGT  49

seq1  TGGATTTTGG-AAATTATATCCATTCTTTTACTTAGAAAA--TCAAGGGC  95
      |||||||||| ||||||||||||||| |||||||||||||  |||| |||
seq2  TGGATTTTGGAAAATTATATCCATTC-TTTACTTAGAAAAATTCAA-GGC  97

seq1  CTGGAATTAG-AGTTTTCTAAT-AGCTAACTCAATTGGAGTAAAATGATT  143
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  CTGGAATTAGAAGTTTTCTAATAAGCTAACTCAATTGGAGTAAAATGATT  147

seq1  ATTGTATGATACAGCAACAAGGTCAACAGACTACTGGAAAAATCAACAGA  193
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTGTATGATACAGCAACAAGGTCAACAGACTACTGG-AAAATCAACAGA  196

seq1  GCTACTCAATAAAAAAATAAGTAATTAGAACAATGAATTA-GGCCAAGAT  242
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  GCTACTCAATAAAAAAATAAGTAA-TAGAACAATGAATTAGGGCCAAGAT  245

seq1  GGTTCTCACATTGAAACCAGAGATCTATAGCTTAGAAGTTATTAAG-TTT  291
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTTCTCACATTGAAACCAGAGATCTATAGCTTAGAAGTTATTAAGTTTT  295

seq1  ATCAAGTAGTTCTTAGTGTTTTTGCCATTTAAAATGTGGAAAGAGTGGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTAGTTCTTAGTGTTTTTGCCATTTAAAATGTGGAAAGAGTGGGA  345

seq1  TGTTGTGATGCATACTTTCAATCCAAGCACTAAGAACGAGGAGGCAGGTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGATGCATACTTTCAATCCAAGCACTAAGAACGAGGAGGCAGGTA  395

seq1  GATTTAGACTTCAAGGCCAGTAGGTACTCTCTAAATAATGTCTGTGGGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGACTTCAAGGCCAGTAGGTACTCTCTAAATAATGTCTGTGGGAT  445

seq1  GCTGAGAAGGCTCACTGGTAAAGGACTTGACCAGCATGCTCAAGGCTGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAGGCTCACTGGTAAAGGACTTGACCAGCATGCTCAAGGCTGTG  495

seq1  GGCTCAATCCCTACTCCTGCAAAAATAACCAAAATGTCTCAACAAATTCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATCCCTACTCCTGCAAAAATAACCAAAATGTCTCAACAAATTCA  545

seq1  GATGTCAGATGTTTTTACATAAAGTGTATTAATAATGTCTTATTAAATTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGATGTTTTTACATAAAGTGTATTAATAATGTCTTATTAAATTA  595

seq1  AATAAATATTTTAATAGAAATGGTCTTTGCCTAGTGCTATTAACACTTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTTTAATAGAAATGGTCTTTGCCTAGTGCTATTAACACTTCA  645

seq1  TTTTTTTGTGGCTTACCCTTGTGTCTTATATAATGTGGTATACTGAAATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTGGCTTACCCTTGTGTCTTATATAATGTGGTATACTGAAATC  695

seq1  TGAAGACCTGAAGATATAGCCTGGGTGGTGGTGGCACAGGCCTTTAATCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCTGAAGATATAGCCTGGGTGGTGGTGGCACAGGCCTTTAATCC  745

seq1  AAGCACTCAGGAGGCAGTAGCAGGTGGTTCCCTGAGTTTGAGGCTAGCCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCAGGAGGCAGTAGCAGGTGGTTCCCTGAGTTTGAGGCTAGCCT  795

seq1  GGTCTACAGAGTGAGTTCCAGGACAATCAGGGCTATGGAGAGAAACCCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCCAGGACAATCAGGGCTATGGAGAGAAACCCTG  845

seq1  TCCTCAAAAACAAAACAAAACAAAACAAAACACAACAAAAAAGATCTGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAAACAAAACAAAACAAAACAAAACACAACAAAAAAGATCTGAA  895

seq1  AATATTACCCACAGGAGAGGGCTATAACCTACCCATTTTCAGTTATCAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACCCACAGGAGAGGGCTATAACCTACCCATTTTCAGTTATCAGG  945

seq1  GTAAATATTCTTTTTATAAAATTTTTGTCCCATCTTTCTTTATTTAATAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTCTTTTTATAAAATTTTTGTCCCATCTTTCTTTATTTAATAT  995

seq1  CTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1045

seq1  CTCTCTCTGTGTGTGTGTGTGTGTGTGAAGGAACAACTTGTGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTGTGTGTGTGTGTGTGTGAAGGAACAACTTGTGGAATTC  1093

seq1: chr4_59070711_59071831
seq2: B6Ng01-205E20.g_69_1190

seq1  GAATTCACAGACATCTGCCTGCTTCTGCCTGGGATTAAGTGTTCTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACATCTGCCTGCTTCTGCCTGGGATTAAGTGTTCTCAACT  50

seq1  GTGCCACAGAGCCAGAGTCTCCAGTGTCACTTCTCAGGTACCAACTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACAGAGCCAGAGTCTCCAGTGTCACTTCTCAGGTACCAACTCTAT  100

seq1  TGCTTTGTAATTACAGGCTCTGTAATTGTCCTGGAACTAGGTTGGTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTAATTACAGGCTCTGTAATTGTCCTGGAACTAGGTTGGTGGCC  150

seq1  AGTGAGCAACAGGGACTCACCTGCTTTTGCCTTTCTAACATTGGGATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAACAGGGACTCACCTGCTTTTGCCTTTCTAACATTGGGATTAA  200

seq1  AATGCAGACCACCATGCCTGACTTTCCTCTTCAACATAGGTTCTGGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACCACCATGCCTGACTTTCCTCTTCAACATAGGTTCTGGGATT  250

seq1  TAAACCTAGGTCCTTGGACCAAGCACTTTGCTGACTCAGCTGTCTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTAGGTCCTTGGACCAAGCACTTTGCTGACTCAGCTGTCTTGTCA  300

seq1  GCCCCGCAGGAAAGGCTTTCGTAAGAGCAGAACAATCAGATCTTGGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCAGGAAAGGCTTTCGTAAGAGCAGAACAATCAGATCTTGGCTTT  350

seq1  AGGGACATTAACTGAGTATATGACACACGCTTAAAGGAACACTGAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATTAACTGAGTATATGACACACGCTTAAAGGAACACTGAGGTTA  400

seq1  TGTGGAGACAGAAAAACATCTGGTAGTATAACAACATGAAATAGAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACAGAAAAACATCTGGTAGTATAACAACATGAAATAGAATCTA  450

seq1  AGCTAAGGTACTGGTGCTATAAATATAGGACAATTGGATAGGAGGCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGTACTGGTGCTATAAATATAGGACAATTGGATAGGAGGCAATG  500

seq1  CTAAAAATTGCTAAAGGACAGACAAGAAGAAATGTAGGTTTGAAGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTGCTAAAGGACAGACAAGAAGAAATGTAGGTTTGAAGGGGAC  550

seq1  AGAGAATATGCAGTCAGTTCATATCTGAATATGCTAACTTTGAGAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATGCAGTCAGTTCATATCTGAATATGCTAACTTTGAGAATTTA  600

seq1  TGGAATATGAAGGTCGAAATATTTAATAAAGATTTAGAGATTTGAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATGAAGGTCGAAATATTTAATAAAGATTTAGAGATTTGAACTGG  650

seq1  AGAGATGGCTCAGTGGTTAAGAGCACTGACTG-TTCTTCTAGAGGTCCTG  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTTCTTCTAGAGGTCCTG  700

seq1  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAA-TCATCTGTAATGAG  748
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTC-ATTCCCAGCAACCACATGGTGGCTCACAATTCATCTGTAATGAG  749

seq1  ATATGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTAGCTACAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTAGCTACAGT  799

seq1  GTACTCATATAAATAAAATAAATAAAAACC-TTAAAAAAAAAGGAATTAG  847
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTACTCATATAAATAAAATAAATAAAAACCTTTAAAAAAAAAGGAATTAG  849

seq1  AGATTTAGTTTGGCATGATGGCACATGGCTTTAATCCCAGCTCTTGGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGTTTGGCATGATGGCACATGGCTTTAATCCCAGCTCTTGGGAG  899

seq1  GCAGAGGTAGGCAGATCTAGCCTGGTCTACAGAGTAAGTTCCAGGACAGC  947
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAGAGGTAGGCAGATCTAGCCTGGTCTACAGAGTAA-TTCCAGGACAGC  948

seq1  CAGAACTACACAGTGAAACCCTGCCTTGAAAAAAGAAATAGAGATTTATG  997
      ||||||||||||||||||||||||| |  |||||||||| ||||||||||
seq2  CAGAACTACACAGTGAAACCCTGCCCTTGAAAAAGAAAT-GAGATTTATG  997

seq1  CCAGGAATTCCCCAGAAAGACTACA-GATACCAACATATACTGATGAAAG  1046
      |||||| |||||||||||||||||| ||||||||||||||||||||||  
seq2  CCAGGATTTCCCCAGAAAGACTACAGGATACCAACATATACTGATGAAGT  1047

seq1  CTGTAGTAGATAAG-ATGTATAATGAATAAAACAGAAGAGAAA-GTACTC  1094
      |||||||| ||||| |||||||||| ||||||| ||||||||| ||||||
seq2  CTGTAGTAAATAAGAATGTATAATGCATAAAAC-GAAGAGAAAGGTACTC  1096

seq1  ACAACAAATACATTTAGAGACTGATAC  1121
       |||| ||||| || |||  |||||||
seq2  CCAACGAATACTTTAAGA-TCTGATAC  1122