BAC Information

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BAC

Clone NameB6Ng01-205J05
Chromosome4 (Build37)
Map Location 59,097,112 - 59,252,270
singlet/doubletdoublet
Overlap geneAI481877, LOC433712, Ugcg
Upstream geneSvep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10
Downstream geneLOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205J05.bB6Ng01-205J05.g
ACCGA025221GA025222
length1,114933
definitionB6Ng01-205J05.b B6Ng01-205J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,097,112 - 59,098,218)(59,251,211 - 59,252,270)
sequence
gaattctgtacctgtaagcaagaacgagacccaagagtttctgcagcctc
ccagttgccacagcatacaatatttattagctgattctccagcactaagc
aaattactgtagaaaaagaatcaaagtttaattcattcatagtattgccc
acagatgtatcatggttttgaagaccctataacagtctttgaagtagaca
ctcagcattacagagaaagagactgaggcacagagcaattaagagcaagt
aatggagcctgataactttaatgcagagctttaaatcacttattctgggg
tttactataacttttcaaattcatatcttgaaacctcaattccagaatac
cagacaatgactgtgtttggagagaagatcttttaatcaagagataatta
ggtaaaggaagtcattagagttctttttagtcttacacaatcaaaaccaa
cacagcaaatactttactcagtagcttctgggactatgagaaaataagac
tattgtttatgccaaccagcctgtggtatttgttatggaactaatccaca
caatgtgccttacttacatggcagtgagtgccactggcatctcttcagag
tcaatttcctaatcattttatttctgtgtcaggacattaaaactttccat
ttacttacttttaataagcaatattaatactaacatagtaatatcacatt
caaaattctaaaagttctattgtgaaaaaaatttaccatattaatgtatt
acctagttcccatctaggcaaagtcagtcttatgtttgtttcttgcatca
ctatctaacaacagtctctgaaaagccacagatgtgtgcctatatattca
tatcctttctctagctgcttataatacacattatatagtctcatattttt
tcataagaatttcttggaagttgcctttaaatggagctatttcatttaaa
aacttgcttgtcttgaacttgggttctagaatattattcttttaccttac
attttacatgtagcagaaaacggaaatgtcctgaatcccatgtgtaatga
actcactgcagaatgctgccttgtaagattagaatgggttggttgcattt
tctaggtctcctga
gaattccaaagaactctacttcctcattatgtcattggttctggacactc
cagggagaagaattaaaaaaaaaaaaaaaaacaaaaaacaaaaaaaaaac
agaggtttgctaatggctggaatatacctgccaaacaacttcctaggagt
gaagaggttaggtcaaaaggcatgtacatttgtactttgggtcctgtctg
tgacacgttttaggcccaccagcagtgtagatggacaactgtttttctac
acctttgcaagtaaaatgtgcctttaaacttggctcgttttctaagtgga
aataaaagagttgacaacgaaccaggacggtgacaggggacactcactgg
atactgtctggaagaggaaacccggcttctgtaactgttgtcctggagtt
tactcctgctgctctggatcttaaggacagaatagggtagaggtggggaa
gatggggcagagaacaataaggggatgaggcaagacgggaaacagaaagc
aaacagaagggatgaagagaaagaggaagaggagcaacagagaactggac
gaaccaggacagagggcaggaagttgcagtccttggcaccccagtcacac
ttctgccttctctgtactcactgacctcaccccgcctgggcacacatttc
taccaggcaccccacttcctctaagcaagcggtcatgtcacacatagctc
agttctcctgccattctcagacctctggttatggaaacatctgatgtcca
agaaatctctgctagcaattttgccaagaaaagaagttcagagtcatata
ttgcagtgtgtcacacagtgcaccttttgtacacatatctttactgcaaa
tgtttattgcaatgagccatttgttctgtttcaggcttctggctccaaat
tttggttgttgtctgttttattttatttattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59097112_59098218
seq2: B6Ng01-205J05.b_47_1160

seq1  GAATTCTGTACCTGTAAGCAAGAACGAGACCCAAGAGTTTCTGCAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACCTGTAAGCAAGAACGAGACCCAAGAGTTTCTGCAGCCTC  50

seq1  CCAGTTGCCACAGCATACAATATTTATTAGCTGATTCTCCAGCACTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCCACAGCATACAATATTTATTAGCTGATTCTCCAGCACTAAGC  100

seq1  AAATTACTGTAGAAAAAGAATCAAAGTTTAATTCATTCATAGTATTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGTAGAAAAAGAATCAAAGTTTAATTCATTCATAGTATTGCCC  150

seq1  ACAGATGTATCATGGTTTTGAAGACCCTATAACAGTCTTTGAAGTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTATCATGGTTTTGAAGACCCTATAACAGTCTTTGAAGTAGACA  200

seq1  CTCAGCATTACAGAGAAAGAGACTGAGGCACAGAGCAATTAAGAGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTACAGAGAAAGAGACTGAGGCACAGAGCAATTAAGAGCAAGT  250

seq1  AATGGAGCCTGATAACTTTAATGCAGAGCTTTAAATCACTTATTCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCCTGATAACTTTAATGCAGAGCTTTAAATCACTTATTCTGGGG  300

seq1  TTTACTATAACTTTTCAAATTCATATCTTGAAACCTCAATTCCAGAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATAACTTTTCAAATTCATATCTTGAAACCTCAATTCCAGAATAC  350

seq1  CAGACAATGACTGTGTTTGGAGAGAAGATCTTTTAATCAAGAGATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATGACTGTGTTTGGAGAGAAGATCTTTTAATCAAGAGATAATTA  400

seq1  GGTAAAGGAAGTCATTAGAGTTCTTTTTAGTCTTACACAATCAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGAAGTCATTAGAGTTCTTTTTAGTCTTACACAATCAAAACCAA  450

seq1  CACAGCAAATACTTTACTCAGTAGCTTCTGGGACTATGAGAAAATAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAATACTTTACTCAGTAGCTTCTGGGACTATGAGAAAATAAGAC  500

seq1  TATTGTTTATGCCAACCAGCCTGTGGTATTTGTTATGGAACTAATCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTATGCCAACCAGCCTGTGGTATTTGTTATGGAACTAATCCACA  550

seq1  CAATGTGCCTTACTTACATGGCAGTGAGTGCCACTGGCATCTCTTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCCTTACTTACATGGCAGTGAGTGCCACTGGCATCTCTTCAGAG  600

seq1  TCAATTTCCTAATCATTTTATTTCTGTGTCAGGACATTAAAACTTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCCTAATCATTTTATTTCTGTGTCAGGACATTAAAACTTTCCAT  650

seq1  TTACTTACTTTTAATAAGCAATATTAATACTAACATAGTAATATCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACTTTTAATAAGCAATATTAATACTAACATAGTAATATCACATT  700

seq1  CAAAATTCTAAAAGTTCTATTGTGAAAAAAATTTACCATATTAATGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCTAAAAGTTCTATTGTGAAAAAAATTTACCATATTAATGTATT  750

seq1  ACCTAGTTCCCATCTAGGCAAAGTCAGTCTTATGTTTGTTTCTTGCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTCCCATCTAGGCAAAGTCAGTCTTATGTTTGTTTCTTGCATCA  800

seq1  CTATCTAACAACAGTCTCTGAAAAGCCACAGATGTGTGCCTATATATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAACAACAGTCTCTGAAAAGCCACAGATGTGTGCCTATATATTCA  850

seq1  TATCCTTTCTCTAGCTGCTTATAATACACATTATATAGTCTCATATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTCTCTAGCTGCTTATAATACACATTATATAGTCTCATATTTTT  900

seq1  TCATAAGAATTTCTTGGAAGTTGCCTTTAAATGGAGCTATTTCA-TTAAA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATAAGAATTTCTTGGAAGTTGCCTTTAAATGGAGCTATTTCATTTAAA  950

seq1  AAC-TGCTTGTCTTGAACTTGGGTTCTAG-ATA-TAATCTTT--ACTTAC  994
      ||| ||||||||||||||||||||||||| ||| || |||||   |||||
seq2  AACTTGCTTGTCTTGAACTTGGGTTCTAGAATATTATTCTTTTACCTTAC  1000

seq1  ATTTTACATGTAGCAGAAAACGGAAATGTCTGAAATCCCATGTGTAATGA  1044
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATTTTACATGTAGCAGAAAACGGAAATGTCCTGAATCCCATGTGTAATGA  1050

seq1  ACTCACTGCAGAATGCTGCCTTGGTAAGATTAG-ATGGGTTGGTGGCA-T  1092
      |||||||||||||||||||||| |||||||||| |||||||||| ||| |
seq2  ACTCACTGCAGAATGCTGCCTT-GTAAGATTAGAATGGGTTGGTTGCATT  1099

seq1  TTCTAGGTCTCCTGA  1107
      |||||||||||||||
seq2  TTCTAGGTCTCCTGA  1114

seq1: chr4_59251211_59252270
seq2: B6Ng01-205J05.g_69_1001 (reverse)

seq1  TAAATACTTTTTAAAAAACCCATTGTATGGATTCTTCATGAATTTTACAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATGCACCCCAATACCACTCATCTCCCCATCCCTTTGTATCCACCTTCCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTGCAACCTCCCCTACCATAAAATAAAATAAAATAAAACAAACAAAC  150
                             |||| ||||||||||||||| ||||  
seq2  ----------------------TAAAT-AAATAAAATAAAACAGACAA--  25

seq1  AAACAAAAATCTGAAGCCAGAAGCCTTGAAACAG-ACCAATGGCTCATTG  199
       ||| ||||| || ||||||||||| |||||||| || ||||||||||||
seq2  CAACCAAAATTTGGAGCCAGAAGCC-TGAAACAGAACAAATGGCTCATTG  74

seq1  CAATAAACATTTGCAAGTAAAGATATGTGTACAAAAGGGTGCACTGTGTG  249
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CAATAAACATTTGC-AGTAAAGATATGTGTACAAAA-GGTGCACTGTGTG  122

seq1  ACACACTGCAATATATGACTCTGAACTTCTTTTCTTGGCAAAATTGCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGCAATATATGACTCTGAACTTCTTTTCTTGGCAAAATTGCTAG  172

seq1  CAGAGATTTCTTGGACATCAGATGTTTCCATAACCAGAGGTCTGAGAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTTCTTGGACATCAGATGTTTCCATAACCAGAGGTCTGAGAATG  222

seq1  GCAGGAGAACTGAGCTATGTGTGACATGACCGCTTGCTTAGAGGAAGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAACTGAGCTATGTGTGACATGACCGCTTGCTTAGAGGAAGTGG  272

seq1  GGTGCCTGGTAGAAATGTGTGCCCAGGCGGGGTGAGGTCAGTGAGTACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGGTAGAAATGTGTGCCCAGGCGGGGTGAGGTCAGTGAGTACAG  322

seq1  AGAAGGCAGAAGTGTGACTGGGGTGCCAAGGACTGCAACTTCCTGCCCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGAAGTGTGACTGGGGTGCCAAGGACTGCAACTTCCTGCCCTC  372

seq1  TGTCCTGGTTCGTCCAGTTCTCTGTTGCTCCTCTTCCTCTTTCTCTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGTTCGTCCAGTTCTCTGTTGCTCCTCTTCCTCTTTCTCTTCAT  422

seq1  CCCTTCTGTTTGCTTTCTGTTTCCCGTCTTGCCTCATCCCCTTATTGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGTTTGCTTTCTGTTTCCCGTCTTGCCTCATCCCCTTATTGTTC  472

seq1  TCTGCCCCATCTTCCCCACCTCTACCCTATTCTGTCCTTAAGATCCAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCATCTTCCCCACCTCTACCCTATTCTGTCCTTAAGATCCAGAG  522

seq1  CAGCAGGAGTAAACTCCAGGACAACAGTTACAGAAGCCGGGTTTCCTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAGTAAACTCCAGGACAACAGTTACAGAAGCCGGGTTTCCTCTT  572

seq1  CCAGACAGTATCCAGTGAGTGTCCCCTGTCACCGTCCTGGTTCGTTGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGTATCCAGTGAGTGTCCCCTGTCACCGTCCTGGTTCGTTGTCA  622

seq1  ACTCTTTTATTTCCACTTAGAAAACGAGCCAAGTTTAAAGGCACATTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTATTTCCACTTAGAAAACGAGCCAAGTTTAAAGGCACATTTTA  672

seq1  CTTGCAAAGGTGTAGAAAAACAGTTGTCCATCTACACTGCTGGTGGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAGGTGTAGAAAAACAGTTGTCCATCTACACTGCTGGTGGGCCT  722

seq1  AAAACGTGTCACAGACAGGACCCAAAGTACAAATGTACATGCCTTTTGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGTCACAGACAGGACCCAAAGTACAAATGTACATGCCTTTTGAC  772

seq1  CTAACCTCTTCACTCCTAGGAAGTTGTTTGGCAGGTATATTCCAGCCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCTTCACTCCTAGGAAGTTGTTTGGCAGGTATATTCCAGCCATT  822

seq1  AGCAAACCTCTGTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTTTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCTCTGTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTTTAAT  872

seq1  TCTTCTCCCTGGAGTGTCCAGAACCAATGACATAATGAGGAAGTAGAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCTGGAGTGTCCAGAACCAATGACATAATGAGGAAGTAGAGTT  922

seq1  CTTTGGAATTC  1060
      |||||||||||
seq2  CTTTGGAATTC  933